Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

48300932 .. 48306931

Gene Structure 6000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGCTGCAATGCTCTAAAACCTGGCTATCAACAGCAGCCGCTTTCTCATATTCTCTCCTCCGCCGTAACTGTTACTCTGCCTCATTCTCCACTTTGACTCCGCCGCCGTACCTGAAAGCCTTCTCTTTCTCCTCCCTACAACCACCGCCGGCCGCCGCCATGGTGCCCCACCCCAAAGACGACGCTTACCTCGATAGCGTAATTCCCAAGCGAATCCAGCTCTTCGAGGCCATCCAGGCTCAGCAGCTCGCCCATCGCCAGTCCCTCCCTTCCGATCCAATCAAGATTACGTTGCCGGACGGGAAGGTGAAGGAGGGGAAGAAGTGGGTGACTTCGCCGTTCGACGTTGCGAAGGAGATTTCGAAGAGCTTGGCGTCGAATGCCTTGATTTCTGAGGTCAATGGGGTACTGTGGGACATGAGCAGGCCTTTGGAGGGTGACTGTGAGCTCAAGCTCTTCACATTTGACAATGATGAAGGCAGGGACACTTTCTGGCATTCTAGCGCGCACATTCTCGGACAGGCACTTGAGGTTGAATACGGGTGCAAGTTGTGTATCGGTCCCTGCACCACTAGAGGAGAGGGTTTCTATTATGATGCATTTTATGGTGATTTGGGGTTGAATGAGGATCACTTCAAGCAAATTGAATCAGGGGCAGACAAGGCTGTTAAGGCCAAACAGCCATTTGAGCGCATTGAAGTAACAAGGGATCAGGCACTTGAGATTTTTTCTGATAACAGATTCAAGGTTGAAATCATCAATGATCTTCCTGCTGACAAAACTATCACCGTCTACAGATGTGGCCCCTTGGTTGACTTGTGTCGTGGACCGCACATACCAAACACATCATTTGTCAAAGCATTGGCATGTTTGAAGGCTTCTTCCGCCTATTGGAGAGGAAATAAAGATCGTGAAAGCTTACAGAGAGTTTATGGAATATCTTATCCTGATAAGAAAAGTTTGCAGTTATATCTCAAGCGTCTGGAAGAAGCAAAAAAATATGATCATAGATTGTTAGGTACAAAGCAGGAGCTGTTCTTTAATCACCCACTTAGTCCAGGAAGTTGGTTCTTCCTGCCCAATGGCACCCGGATTTATAACAAGCTCATGGAGTTTATAAAAAATCAATACAGAGAAAGAGGATACCAAGAGGTTATATCGCCAAACATGTACAATATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTCTTTGAGATTGAGAAACAGGAGTTTGGATTGAAGCCAATGAATTGTCCGGGGCATTGTTTAATGTTTCAGCATAGAGTTCGTTCTTATAGAGAGCTTCCACTTCGACTGGCTGACTTTGGGGTTTTGCACCGGAATGAGGCCAGTGGTGCACTCACTGGATTAACTCGTGTCAGGAGATTCCAGCAGGATGATGCTCATATCTTTTGCAGGGAGTCACAAATAAAAGATGAAGTTAAGGGCGTCTTAGACTTCATCCAGTATACCTATGATATATTTGGCTTCACTTTTGATCTGAAGCTATCAACAAGGCCAGAAAAGTACCTTGGAGAGATAGAAACATGGGAGAAAGCTGAGGCAGCTCTTACAGAAGCATTAAATGAGTTTGGCAAACCATGGCAGATAAATGAAGGGGATGGTGCATTTTACGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAACAGGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAGGGAGGCACCTGTTATGATACACAGAGCCATTTTGGGTTCTGTTGAGCGTATGTTTGCTATACTGTTGGAGCACTACAAGGGGAAATGGCCGTTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCTGTCTCGGACAAATCCCAGCCCTATGCTCAGCAGGTCCGGGACAAGATCTTTCAGGCTGGTTATTTTGTTGATGTTGATACAAGTGATAGGACAATACAGAAAAAGGTACGAGAAGCTCAGATGGCACAGTACAACTACATTCTAGTTGTTGGTGAGGAGGAAGTCAAAACTGGACAGGTGAGCGTACGGGTTAGAGATAAGGCAGATTCCAACGTAATGAGCATGGATAGCCTACTCAAACACTTTAAGGAGGAAGTTGAAGCTTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

730

Amino Acids

83.61

Weight (kDa)

6.65

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	94 - 154	1.3e-17	TGS domain
tRNA_SAD	PF07973	262 - 311	3e-12	Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_2b	PF00587	410 - 622	8.7e-46	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	634 - 723	1.1e-21	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1098, 1118
Acc36I	ACCTGC	2 cut(s)	1750, 1939
AccB1I	GGYRCC	3 cut(s)	163, 1085, 1795
AccI	GTMKAC	2 cut(s)	792, 1493
AccII	CGCG	1 cut(s)	506
AciI	CCGC	9 cut(s)	39, 61, 101, 104, 146, 153, 156, 830, 885
AclWI	GGATC	3 cut(s)	269, 636, 717
AcoI	YGGCCR	2 cut(s)	150, 1877
AcuI	CTGAAG	1 cut(s)	1547
AcyI	GRCGYC	2 cut(s)	374, 1473
AfaI	GTAC	8 cut(s)	110, 408, 1021, 1172, 1553, 2025, 2048, 2103
AfiI	CCNNNNNNNGG	4 cut(s)	434, 891, 1369, 1921
AflIII	ACRYGT	1 cut(s)	1167
AjiI	CACGTC	1 cut(s)	1898
AjnI	CCWGG	3 cut(s)	20, 234, 1057
AjuI	GAANNNNNNNTTGG	2 cut(s)	1539, 1571
Alw21I	GWGCWC	3 cut(s)	450, 1384, 1863
Alw26I	GTCTC	1 cut(s)	1924
Alw44I	GTGCAC	1 cut(s)	1380
AlwI	GGATC	3 cut(s)	269, 636, 717
AlwNI	CAGNNNCTG	1 cut(s)	1033
AoxI	GGCC	8 cut(s)	150, 228, 425, 672, 802, 1371, 1541, 1877
ApaLI	GTGCAC	1 cut(s)	1380
ApeKI	GCWGC	5 cut(s)	4, 35, 244, 1205, 1589
Asp700I	GAANNNNTTC	2 cut(s)	119, 2181
AspLEI	GCGC	3 cut(s)	506, 508, 693
AspS9I	GGNCC	5 cut(s)	560, 803, 827, 1661, 1951
AsuC2I	CCSGG	3 cut(s)	1090, 1281, 1955
AsuHPI	GGTGA	9 cut(s)	319, 340, 449, 620, 778, 1037, 1787, 2081, 2107
AsuII	TTCGAA	1 cut(s)	362
AvaII	GGWCC	4 cut(s)	560, 827, 1661, 1951
BaeGI	GKGCMC	2 cut(s)	168, 1384
BanI	GGYRCC	3 cut(s)	163, 1085, 1795
BanII	GRGCYC	1 cut(s)	450
BauI	CACGAG	1 cut(s)	1398
Bbv12I	GWGCWC	3 cut(s)	450, 1384, 1863
BbvCI	CCTCAGC	1 cut(s)	1584
BbvI	GCAGC	4 cut(s)	47, 256, 1192, 1601
BccI	CCATC	4 cut(s)	239, 261, 1640, 2032
BceAI	ACGGC	4 cut(s)	48, 91, 322, 1864
BcgI	CGANNNNNNTGC	2 cut(s)	1292, 1326
BciT130I	CCWGG	3 cut(s)	22, 236, 1059
BciVI	GTATCC	1 cut(s)	1136
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	3 cut(s)	1090, 1281, 1955
BcoDI	GTCTC	1 cut(s)	1924
BfaI	CTAG	3 cut(s)	501, 573, 2060
BfmI	CTRYAG	1 cut(s)	793
BfuAI	ACCTGC	2 cut(s)	1750, 1939
BfuI	GTATCC	1 cut(s)	1136
BglI	GCCNNNNNGGC	2 cut(s)	236, 1885
BglII	AGATCT	1 cut(s)	1962
BisI	GCNGC	9 cut(s)	5, 36, 39, 104, 153, 156, 245, 1206, 1590
BlpI	GCTNAGC	2 cut(s)	240, 1944
BlsI	GCNGC	9 cut(s)	6, 37, 40, 105, 154, 157, 246, 1207, 1591
Bme1390I	CCNGG	6 cut(s)	22, 236, 1059, 1090, 1281, 1955
Bme18I	GGWCC	4 cut(s)	560, 827, 1661, 1951
BmgBI	CACGTC	1 cut(s)	1898
BmgT120I	GGNCC	5 cut(s)	560, 803, 827, 1661, 1951
BmiI	GGNNCC	5 cut(s)	165, 562, 805, 1087, 1797
BmrFI	CCNGG	6 cut(s)	22, 236, 1059, 1090, 1281, 1955
BmsI	GCATC	3 cut(s)	586, 1414, 1678
BoxI	GACNNNNGTC	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	1584
Bpu1102I	GCTNAGC	2 cut(s)	240, 1944
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	4 cut(s)	434, 548, 740, 959
BpuMI	CCSGG	3 cut(s)	1090, 1281, 1955
BsaBI	GATNNNNATC	1 cut(s)	1673
BsaHI	GRCGYC	2 cut(s)	374, 1473
BsaJI	CCNNGG	5 cut(s)	159, 807, 1280, 1555, 1625
BsaWI	WCCGGW	1 cut(s)	1362
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 1211, 1241
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 891, 1369, 1921
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	6 cut(s)	259, 1344, 1374, 1393, 1489, 2092
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	1673
BseBI	CCWGG	3 cut(s)	22, 236, 1059
BseDI	CCNNGG	5 cut(s)	159, 807, 1280, 1555, 1625
BseGI	GGATG	4 cut(s)	231, 1426, 1485, 1651
BseJI	GATNNNNATC	1 cut(s)	1673
BseLI	CCNNNNNNNGG	4 cut(s)	434, 891, 1369, 1921
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	6 cut(s)	254, 384, 1575, 1779, 1958, 2048
BseNI	ACTGG	6 cut(s)	259, 1344, 1374, 1393, 1489, 2092
BsePI	GCGCGC	1 cut(s)	504
BseRI	GAGGAG	4 cut(s)	47, 121, 591, 2087
BseSI	GKGCMC	2 cut(s)	168, 1384
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	4 cut(s)	47, 256, 1192, 1601
BseYI	CCCAGC	1 cut(s)	1932
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	8 cut(s)	152, 230, 427, 674, 804, 1373, 1543, 1879
BshNI	GGYRCC	3 cut(s)	163, 1085, 1795
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	3 cut(s)	450, 1384, 1863
BsiSI	CCGG	6 cut(s)	149, 296, 1090, 1280, 1363, 1954
BsiWI	CGTACG	1 cut(s)	2101
BslFI	GGGAC	5 cut(s)	247, 428, 497, 546, 1970
BslI	CCNNNNNNNGG	4 cut(s)	434, 891, 1369, 1921
BsmAI	GTCTC	1 cut(s)	1924
BsmFI	GGGAC	5 cut(s)	247, 428, 497, 546, 1970
BsmI	GAATGC	2 cut(s)	385, 496
BsnI	GGCC	8 cut(s)	152, 230, 427, 674, 804, 1373, 1543, 1879
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	4 cut(s)	168, 450, 1384, 1863
Bsp1407I	TGTACA	1 cut(s)	1170
Bsp143I	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
Bsp1720I	GCTNAGC	2 cut(s)	240, 1944
Bsp19I	CCATGG	2 cut(s)	159, 1625
BspACI	CCGC	9 cut(s)	39, 61, 101, 104, 146, 153, 156, 830, 885
BspANI	GGCC	8 cut(s)	152, 230, 427, 674, 804, 1373, 1543, 1879
BspCNI	CTCAG	6 cut(s)	253, 385, 1576, 1778, 1957, 2047
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	5 cut(s)	165, 562, 805, 1087, 1797
BspMI	ACCTGC	2 cut(s)	1750, 1939
BspPI	GGATC	3 cut(s)	269, 636, 717
BspQI	GCTCTTC	3 cut(s)	227, 359, 461
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	3 cut(s)	163, 1085, 1795
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	1170
BsrI	ACTGG	6 cut(s)	259, 1344, 1374, 1393, 1489, 2092
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	5 cut(s)	159, 807, 1280, 1555, 1625
BssHII	GCGCGC	1 cut(s)	504
BssMI	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
BssNAI	GTATAC	1 cut(s)	1494
BssNI	GRCGYC	2 cut(s)	374, 1473
BssSI	CACGAG	1 cut(s)	1398
BssT1I	CCWWGG	4 cut(s)	159, 807, 1555, 1625
Bst1107I	GTATAC	1 cut(s)	1494
Bst2BI	CACGAG	1 cut(s)	1398
Bst2UI	CCWGG	3 cut(s)	22, 236, 1059
Bst4CI	ACNGT	6 cut(s)	71, 411, 443, 790, 1854, 2046
Bst6I	CTCTTC	3 cut(s)	227, 359, 461
BstACI	GRCGYC	2 cut(s)	374, 1473
BstAUI	TGTACA	1 cut(s)	1170
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	5 cut(s)	150, 249, 425, 506, 1747
BstDEI	CTNAG	9 cut(s)	240, 393, 1052, 1477, 1584, 1765, 1889, 1944, 2034
BstDSI	CCRYGG	2 cut(s)	159, 1625
BstF5I	GGATG	4 cut(s)	231, 1426, 1485, 1651
BstFNI	CGCG	1 cut(s)	506
BstHHI	GCGC	3 cut(s)	506, 508, 693
BstKTI	GATC	8 cut(s)	277, 631, 712, 766, 910, 1006, 1525, 1965
BstMAI	GTCTC	1 cut(s)	1924
BstMBI	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
BstMCI	CGRYCG	1 cut(s)	153
BstNI	CCWGG	3 cut(s)	22, 236, 1059
BstNSI	RCATGY	2 cut(s)	870, 1171
BstPAI	GACNNNNGTC	1 cut(s)	819
BstSCI	CCNGG	6 cut(s)	20, 234, 1057, 1088, 1279, 1953
BstSFI	CTRYAG	1 cut(s)	793
BstSLI	GKGCMC	2 cut(s)	168, 1384
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	47, 256, 1192, 1601
BstX2I	RGATCY	1 cut(s)	1962
BstXI	CCANNNNNNTGG	1 cut(s)	1065
BstYI	RGATCY	1 cut(s)	1962
BstZ17I	GTATAC	1 cut(s)	1494
BstZI	CGGCCG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	1136
BsuRI	GGCC	8 cut(s)	152, 230, 427, 674, 804, 1373, 1543, 1879
BtgI	CCRYGG	2 cut(s)	159, 1625
BtgZI	GCGATG	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	1898
BtsCI	GGATG	4 cut(s)	231, 1426, 1485, 1651
BtsIMutI	CAGTG	4 cut(s)	1381, 1386, 1684, 1715
BveI	ACCTGC	2 cut(s)	1750, 1939
Cac8I	GCNNGC	5 cut(s)	150, 249, 425, 506, 1747
CaiI	CAGNNNCTG	1 cut(s)	1033
CfoI	GCGC	3 cut(s)	506, 508, 693
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	5 cut(s)	560, 803, 827, 1661, 1951
CseI	GACGC	4 cut(s)	191, 363, 968, 1462
Csp6I	GTAC	8 cut(s)	109, 407, 1020, 1171, 1552, 2024, 2047, 2102
CviAII	CATG	9 cut(s)	160, 418, 867, 1108, 1168, 1202, 1572, 1626, 2140
CviQI	GTAC	8 cut(s)	109, 407, 1020, 1171, 1552, 2024, 2047, 2102
DdeI	CTNAG	9 cut(s)	240, 393, 1052, 1477, 1584, 1765, 1889, 1944, 2034
DpnI	GATC	8 cut(s)	276, 630, 711, 765, 909, 1005, 1524, 1964
DpnII	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
EaeI	YGGCCR	2 cut(s)	150, 1877
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	3 cut(s)	227, 359, 461
EarI	CTCTTC	3 cut(s)	227, 359, 461
EciI	GGCGGA	3 cut(s)	50, 90, 874
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	4 cut(s)	159, 807, 1555, 1625
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	1675
Eco47I	GGWCC	4 cut(s)	560, 827, 1661, 1951
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	1547
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	20, 234, 1057
EcoRV	GATATC	1 cut(s)	1675
EcoT14I	CCWWGG	4 cut(s)	159, 807, 1555, 1625
EcoT22I	ATGCAT	2 cut(s)	601, 1693
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	4 cut(s)	159, 807, 1555, 1625
FaeI	CATG	9 cut(s)	163, 421, 870, 1111, 1171, 1205, 1575, 1629, 2143
FalI	AAGNNNNNCTT	2 cut(s)	1460, 1492
FaqI	GGGAC	5 cut(s)	247, 428, 497, 546, 1970
FatI	CATG	9 cut(s)	159, 417, 866, 1107, 1167, 1201, 1571, 1625, 2139
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	2 cut(s)	792, 1493
Fnu4HI	GCNGC	9 cut(s)	5, 36, 39, 104, 153, 156, 245, 1206, 1590
FokI	GGATG	4 cut(s)	218, 1433, 1472, 1658
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	9 cut(s)	5, 36, 39, 104, 153, 156, 245, 1206, 1590
FspBI	CTAG	3 cut(s)	501, 573, 2060
GlaI	GCGC	3 cut(s)	505, 507, 692
GluI	GCNGC	9 cut(s)	5, 36, 39, 104, 153, 156, 245, 1206, 1590
GsaI	CCCAGC	1 cut(s)	1936
HaeIII	GGCC	8 cut(s)	152, 230, 427, 674, 804, 1373, 1543, 1879
HapII	CCGG	6 cut(s)	149, 296, 1090, 1280, 1363, 1954
HgaI	GACGC	4 cut(s)	191, 363, 968, 1462
HhaI	GCGC	3 cut(s)	506, 508, 693
Hin1I	GRCGYC	2 cut(s)	374, 1473
Hin1II	CATG	9 cut(s)	163, 421, 870, 1111, 1171, 1205, 1575, 1629, 2143
Hin6I	GCGC	3 cut(s)	504, 506, 691
HinP1I	GCGC	3 cut(s)	504, 506, 691
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HindIII	AAGCTT	2 cut(s)	916, 2178
HinfI	GANTC	7 cut(s)	97, 213, 647, 741, 1410, 1445, 2123
HpaII	CCGG	6 cut(s)	149, 296, 1090, 1280, 1363, 1954
HphI	GGTGA	9 cut(s)	319, 340, 449, 620, 778, 1037, 1787, 2081, 2107
Hpy166II	GTNNAC	6 cut(s)	793, 814, 827, 1382, 1494, 1895
Hpy188I	TCNGA	8 cut(s)	274, 394, 518, 733, 1527, 1687, 1924, 2037
Hpy188III	TCNNGA	5 cut(s)	283, 911, 947, 983, 1405
Hpy8I	GTNNAC	6 cut(s)	793, 814, 827, 1382, 1494, 1895
Hpy99I	CGWCG	3 cut(s)	185, 347, 379
HpyAV	CCTTC	9 cut(s)	130, 279, 298, 304, 346, 470, 868, 1634, 1775
HpyCH4III	ACNGT	6 cut(s)	71, 411, 443, 790, 1854, 2046
HpyCH4IV	ACGT	4 cut(s)	290, 345, 1897, 2130
HpyF3I	CTNAG	9 cut(s)	240, 393, 1052, 1477, 1584, 1765, 1889, 1944, 2034
HpySE526I	ACGT	4 cut(s)	290, 345, 1897, 2130
Hsp92I	GRCGYC	2 cut(s)	374, 1473
Hsp92II	CATG	9 cut(s)	163, 421, 870, 1111, 1171, 1205, 1575, 1629, 2143
HspAI	GCGC	3 cut(s)	504, 506, 691
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	1003
Kzo9I	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
LguI	GCTCTTC	3 cut(s)	227, 359, 461
LmnI	GCTCC	2 cut(s)	1030, 1858
Lsp1109I	GCAGC	4 cut(s)	47, 256, 1192, 1601
LweI	GCATC	3 cut(s)	586, 1414, 1678
MaeI	CTAG	3 cut(s)	501, 573, 2060
MaeII	ACGT	4 cut(s)	290, 345, 1897, 2130
MaeIII	GTNAC	6 cut(s)	65, 71, 328, 437, 700, 1446
MalI	GATC	8 cut(s)	276, 630, 711, 765, 909, 1005, 1524, 1964
MboI	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
MboII	GAAGA	9 cut(s)	214, 331, 376, 448, 758, 873, 998, 1063, 1790
MfeI	CAATTG	1 cut(s)	1905
MflI	RGATCY	1 cut(s)	1962
MhlI	GDGCHC	4 cut(s)	168, 450, 1384, 1863
MluCI	AATT	5 cut(s)	201, 642, 1210, 1273, 1905
MlyI	GAGTC	2 cut(s)	91, 1454
MmeI	TCCRAC	2 cut(s)	1836, 2151
Mph1103I	ATGCAT	2 cut(s)	601, 1693
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	2 cut(s)	119, 2181
MseI	TTAA	7 cut(s)	669, 1041, 1292, 1394, 1467, 1607, 2163
MslI	CAYNNNNRTG	2 cut(s)	865, 1365
MspI	CCGG	6 cut(s)	149, 296, 1090, 1280, 1363, 1954
MspR9I	CCNGG	6 cut(s)	22, 236, 1059, 1090, 1281, 1955
MunI	CAATTG	1 cut(s)	1905
Mva1269I	GAATGC	2 cut(s)	385, 496
MvaI	CCWGG	3 cut(s)	22, 236, 1059
MvnI	CGCG	1 cut(s)	506
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	3 cut(s)	1090, 1281, 1955
NcoI	CCATGG	2 cut(s)	159, 1625
NdeII	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	9 cut(s)	163, 421, 870, 1111, 1171, 1205, 1575, 1629, 2143
NlaIV	GGNNCC	5 cut(s)	165, 562, 805, 1087, 1797
NmuCI	GTSAC	3 cut(s)	328, 437, 1446
NsiI	ATGCAT	2 cut(s)	601, 1693
NspI	RCATGY	2 cut(s)	870, 1171
NspV	TTCGAA	1 cut(s)	362
PauI	GCGCGC	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	427
PciI	ACATGT	1 cut(s)	1167
PciSI	GCTCTTC	3 cut(s)	227, 359, 461
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	2 cut(s)	385, 496
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	2 cut(s)	119, 2181
PfeI	GAWTC	5 cut(s)	213, 647, 741, 1410, 2123
Pfl23II	CGTACG	1 cut(s)	2101
PfoI	TCCNGGA	2 cut(s)	1057, 1953
PkrI	GCNGC	9 cut(s)	6, 37, 40, 105, 154, 157, 246, 1207, 1591
PleI	GAGTC	2 cut(s)	91, 1453
PpsI	GAGTC	2 cut(s)	91, 1453
PscI	ACATGT	1 cut(s)	1167
PshAI	GACNNNNGTC	1 cut(s)	819
PsiI	TTATAA	2 cut(s)	1098, 1118
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	20, 234, 1057
PspFI	CCCAGC	1 cut(s)	1932
PspGI	CCWGG	3 cut(s)	20, 234, 1057
PspLI	CGTACG	1 cut(s)	2101
PspN4I	GGNNCC	5 cut(s)	165, 562, 805, 1087, 1797
PspPI	GGNCC	5 cut(s)	560, 803, 827, 1661, 1951
PstNI	CAGNNNCTG	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	1962
PteI	GCGCGC	1 cut(s)	504
RsaI	GTAC	8 cut(s)	110, 408, 1021, 1172, 1553, 2025, 2048, 2103
RsaNI	GTAC	8 cut(s)	109, 407, 1020, 1171, 1552, 2024, 2047, 2102
RseI	CAYNNNNRTG	2 cut(s)	865, 1365
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	3 cut(s)	227, 359, 461
SaqAI	TTAA	7 cut(s)	669, 1041, 1292, 1394, 1467, 1607, 2163
SatI	GCNGC	9 cut(s)	5, 36, 39, 104, 153, 156, 245, 1206, 1590
Sau3AI	GATC	8 cut(s)	274, 628, 709, 763, 907, 1003, 1522, 1962
Sau96I	GGNCC	5 cut(s)	560, 803, 827, 1661, 1951
SchI	GAGTC	2 cut(s)	91, 1454
ScrFI	CCNGG	6 cut(s)	22, 236, 1059, 1090, 1281, 1955
SduI	GDGCHC	4 cut(s)	168, 450, 1384, 1863
SfaNI	GCATC	3 cut(s)	586, 1414, 1678
SfcI	CTRYAG	1 cut(s)	793
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	4 cut(s)	560, 827, 1661, 1951
SmiMI	CAYNNNNRTG	2 cut(s)	865, 1365
SmlI	CTYRAG	4 cut(s)	449, 527, 719, 974
SmoI	CTYRAG	4 cut(s)	449, 527, 719, 974
Sse9I	AATT	5 cut(s)	201, 642, 1210, 1273, 1905
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	9 cut(s)	39, 61, 101, 104, 146, 153, 156, 830, 885
SspMI	CTAG	3 cut(s)	501, 573, 2060
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	6 cut(s)	20, 234, 1057, 1088, 1279, 1953
StyI	CCWWGG	4 cut(s)	159, 807, 1555, 1625
TaaI	ACNGT	6 cut(s)	71, 411, 443, 790, 1854, 2046
TaiI	ACGT	4 cut(s)	293, 348, 1900, 2133
TaqI	TCGA	6 cut(s)	192, 225, 342, 362, 377, 1336
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	5 cut(s)	201, 642, 1210, 1273, 1905
TatI	WGTACW	2 cut(s)	1170, 2046
TauI	GCSGC	4 cut(s)	41, 106, 155, 158
TfiI	GAWTC	5 cut(s)	213, 647, 741, 1410, 2123
Tru1I	TTAA	7 cut(s)	669, 1041, 1292, 1394, 1467, 1607, 2163
Tru9I	TTAA	7 cut(s)	669, 1041, 1292, 1394, 1467, 1607, 2163
TscAI	CASTG	4 cut(s)	1381, 1393, 1684, 1715
TseFI	GTSAC	3 cut(s)	328, 437, 1446
TseI	GCWGC	5 cut(s)	4, 35, 244, 1205, 1589
Tsp45I	GTSAC	3 cut(s)	328, 437, 1446
TspDTI	ATGAA	6 cut(s)	489, 1286, 1474, 1476, 1653, 2174
TspGWI	ACGGA	1 cut(s)	1674
TspRI	CASTG	4 cut(s)	1381, 1393, 1684, 1715
VneI	GTGCAC	1 cut(s)	1380
VpaK11BI	GGWCC	4 cut(s)	560, 827, 1661, 1951
XceI	RCATGY	2 cut(s)	870, 1171
XmiI	GTMKAC	2 cut(s)	792, 1493
XmnI	GAANNNNTTC	2 cut(s)	119, 2181
XspI	CTAG	3 cut(s)	501, 573, 2060
Zsp2I	ATGCAT	2 cut(s)	601, 1693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.