Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

4550597 .. 4552573

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGTCTTCTCCTCCTCTACCACCCACTGCTACAATCTTTTGCCCCAACTCCACTTCACTAACCTCCATCACTTCTTTCACTCTCTTCTTTCCCAAGAAATCCCAAAAGTCTTCCTTAATTACAAAACCTAAGCAAGGCTTTGTATGCAAGGCAACAAACAACAATGACCAAAATCAAGATGCTATGGGAAAATTGGACAGGAGAAATATGCTCATCGGTTTGGGTGCTGGCGGGCTATACGGCACGGTGGGTCTTGAAACCAATCCGTTTGCATTTGCCGCACCTGTGCCACCGCCGGACTTAGCCACGTGCGGTCCGGCGGACAAGCCTGATGGTTCAACTATCGATTGCTGCCCGCCAAAAACCACCACAATCATTGACTTCAAGCTACCCGACCCGGGTCCATTGCGCACCAGGCTCGCTTGTCAGGATGTCGCAAAAGACCCCGTGTACTTGGCAAAATATAAAAAGGCCGTCGAGCTCATGCGGGCCCTTCCCGAAGACGACCCACGAAGCCTGGCCCAGCAGGCCATGGTCCACTGTTCGTATTGCGACGGTGGGTATCCAATGGCCGGGTTTTCCGACCTCGAAATCCAAGTCCACTTCTGTTGGCTCTTCTTCCCTTTCCACCGTTGGTATCTCTACTTCTACGAGAAGATCATGGGCAAGCTCATCGACGACCCCACTTTCGCTCTTCCATTCTGGAACTGGGACGCTCCGGCCGGTATGTACATGCCGTCTATTTTTACCGACACCACCTCCTCTCTGTACGACCAATACCGAAACGCCGCGCATCAACCCCCGAAGCTTCTAGACCTCAATTATGGTGGCACCGATGATGACACCGATGACAAGACTAGAATCAAGGAGAACCTCACCACCATGTACCAGCAAATGGTCTCTAAGGCCACTTCTCACCGCCTCTTCTTCGGTGAGCCCTACAGTGCCGGCGACGACCCGAACCCCGGCGCCGGAAACATCGAGAGTATTCCACATAACAACATCCATCTCTGGTCGGGAGATCCTACTCAGACTAATGGGGAGGACATGGGAGCTTTCTACTCAGCCGGGAGGGATCCTCTGTTTTACTCTCACCATGCCAACGTAGACCGCATGTGGTCTATCTACAAAGCGCGAGGTGGGACTGATATCACCAAAACTGATTGGCTTAACACCGAGTTTTTGTTCTACGACGAGAACAAGAATCTGGTCAGAGTCAAAGTCCGTGACTCGCTGGACGAGTCGAAACTCGGGTACAAGTACCAGGACGTGGAGATCCCGTGGCTGAAGTCGAAGCCTACGGCAAGGAAGTCGAAGAATAAAAGGAAGGCGACGGTTTCCTCCGCGGATTTGACTACGAAGTTTCCGGCGACGTTGAGTGAGACTATTAGTGTTGAGGTGGCGCGGCCTTCGGTGGCGAAGAGGACAACGGCGGAGAAGGCAAAGGAGGAGGAGGTGTTGGTGATCAGTGGTATCGAGTTCCCTGGAAGCAAGATGTTGAAGTTTGATGTGTATGTGAATGATGATGCGGATGTGCTGAGCGGGAAGGACAAGGCGGAGTTTGCCGGGAGTTTTGTGCACGTGCCGCATAGGGCGAAGAAGAATATCAAGACGAACTTGAGGTTGGGGTTAACGAATTTGCTGGCGGATTTGGGGGCGGAGGAGGATAGTAGTGTGGTGGTGACGTTGGTGCCGAAGTTTGGGGAAGGGCCAATCACCATTGGTGGGCTGAAGATCGAGCTTATTACTACCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

585

Amino Acids

64.87

Weight (kDa)

6.17

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyrosinase	PF00264	171 - 378	1e-33	Common central domain of tyrosinase
PPO1_DWL	PF12142	383 - 434	1e-26	Polyphenol oxidase middle domain
PPO1_KFDV	PF12143	455 - 581	4.5e-47	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
AccB1I	GGYRCC	3 cut(s)	830, 968, 1690
AccB7I	CCANNNNNTGG	2 cut(s)	895, 1270
AccBSI	CCGCTC	1 cut(s)	1542
AccI	GTMKAC	1 cut(s)	1107
AccII	CGCG	4 cut(s)	791, 1135, 1346, 1405
AclWI	GGATC	4 cut(s)	1016, 1070, 1083, 1270
AcoI	YGGCCR	2 cut(s)	570, 720
AcsI	RAATTY	1 cut(s)	1636
AcuI	CTGAAG	2 cut(s)	1307, 1751
AcvI	CACGTG	2 cut(s)	309, 1582
AcyI	GRCGYC	1 cut(s)	969
AfaI	GTAC	6 cut(s)	452, 731, 770, 887, 1256, 1262
AfiI	CCNNNNNNNGG	9 cut(s)	134, 398, 572, 895, 965, 971, 1270, 1700, 1725
AgsI	TTSAA	4 cut(s)	257, 339, 385, 1501
AjiI	CACGTC	1 cut(s)	1270
AjnI	CCWGG	4 cut(s)	413, 516, 1263, 1483
AjuI	GAANNNNNNNTTGG	2 cut(s)	1607, 1639
AluBI	AGCT	6 cut(s)	388, 481, 670, 808, 1055, 1741
AluI	AGCT	6 cut(s)	388, 481, 670, 808, 1055, 1741
Alw21I	GWGCWC	2 cut(s)	483, 1581
Alw26I	GTCTC	2 cut(s)	904, 1376
Alw44I	GTGCAC	1 cut(s)	1577
AlwI	GGATC	4 cut(s)	1016, 1070, 1083, 1270
Ama87I	CYCGRG	2 cut(s)	397, 1250
AoxI	GGCC	9 cut(s)	471, 489, 519, 528, 570, 720, 906, 1406, 1709
ApaI	GGGCCC	1 cut(s)	493
ApaLI	GTGCAC	1 cut(s)	1577
ApeKI	GCWGC	1 cut(s)	351
ApoI	RAATTY	1 cut(s)	1636
ArsI	GACNNNNNNTTYG	4 cut(s)	582, 614, 671, 703
AspLEI	GCGC	5 cut(s)	411, 793, 971, 1135, 1405
AspS9I	GGNCC	7 cut(s)	314, 401, 489, 490, 520, 535, 1709
AsuC2I	CCSGG	6 cut(s)	398, 399, 574, 966, 1069, 1567
AsuHPI	GGTGA	8 cut(s)	868, 908, 944, 1085, 1144, 1474, 1693, 1708
AvaI	CYCGRG	2 cut(s)	397, 1250
AvaII	GGWCC	3 cut(s)	314, 401, 535
BaeGI	GKGCMC	2 cut(s)	493, 1581
BamHI	GGATCC	1 cut(s)	1075
BanI	GGYRCC	3 cut(s)	830, 968, 1690
BanII	GRGCYC	3 cut(s)	483, 493, 939
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BbrPI	CACGTG	2 cut(s)	309, 1582
BbsI	GAAGAC	2 cut(s)	102, 507
Bbv12I	GWGCWC	2 cut(s)	483, 1581
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	3 cut(s)	74, 326, 1014
BceAI	ACGGC	5 cut(s)	256, 458, 721, 1317, 1446
BcgI	CGANNNNNNTGC	6 cut(s)	400, 434, 655, 689, 1293, 1327
BciT130I	CCWGG	4 cut(s)	415, 518, 1265, 1485
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	1464
BcnI	CCSGG	6 cut(s)	398, 399, 574, 966, 1069, 1567
BcoDI	GTCTC	2 cut(s)	904, 1376
BfaI	CTAG	2 cut(s)	812, 858
BfmI	CTRYAG	1 cut(s)	940
BfoI	RGCGCY	1 cut(s)	972
BfuI	GTATCC	1 cut(s)	573
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	5 cut(s)	279, 352, 789, 1406, 1586
BlpI	GCTNAGC	1 cut(s)	1538
BlsI	GCNGC	5 cut(s)	280, 353, 790, 1407, 1587
Bme18I	GGWCC	3 cut(s)	314, 401, 535
BmeT110I	CYCGRG	2 cut(s)	397, 1250
BmgBI	CACGTC	1 cut(s)	1270
BmgT120I	GGNCC	7 cut(s)	314, 401, 489, 490, 520, 535, 1709
BmiI	GGNNCC	6 cut(s)	402, 491, 832, 970, 1077, 1692
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	3 cut(s)	169, 802, 1516
BmuI	ACTGGG	1 cut(s)	718
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	102, 507
BplI	GAGNNNNNCTC	2 cut(s)	1063, 1095
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	1538
BpuEI	CTTGAG	1 cut(s)	1639
BpuMI	CCSGG	6 cut(s)	398, 399, 574, 966, 1069, 1567
Bsa29I	ATCGAT	1 cut(s)	345
BsaAI	YACGTR	2 cut(s)	309, 1582
BsaHI	GRCGYC	1 cut(s)	969
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	6 cut(s)	397, 531, 964, 1280, 1344, 1483
BsaXI	ACNNNNNCTCC	6 cut(s)	743, 773, 1265, 1295, 1442, 1472
Bsc4I	CCNNNNNNNGG	9 cut(s)	134, 398, 572, 895, 965, 971, 1270, 1700, 1725
Bse118I	RCCGGY	2 cut(s)	722, 947
Bse1I	ACTGG	1 cut(s)	713
Bse3DI	GCAATG	1 cut(s)	404
BseBI	CCWGG	4 cut(s)	415, 518, 1265, 1485
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	6 cut(s)	397, 531, 964, 1280, 1344, 1483
BseGI	GGATG	3 cut(s)	436, 1002, 1537
BseLI	CCNNNNNNNGG	9 cut(s)	134, 398, 572, 895, 965, 971, 1270, 1700, 1725
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	3 cut(s)	1043, 1077, 1529
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	4 cut(s)	751, 1463, 1466, 1676
BseSI	GKGCMC	2 cut(s)	493, 1581
BseX3I	CGGCCG	1 cut(s)	720
BseXI	GCAGC	1 cut(s)	338
BseYI	CCCAGC	1 cut(s)	522
Bsh1236I	CGCG	4 cut(s)	791, 1135, 1346, 1405
Bsh1285I	CGRYCG	1 cut(s)	723
BshFI	GGCC	9 cut(s)	473, 491, 521, 530, 572, 722, 908, 1408, 1711
BshNI	GGYRCC	3 cut(s)	830, 968, 1690
BshVI	ATCGAT	1 cut(s)	345
BsiEI	CGRYCG	1 cut(s)	723
BsiHKAI	GWGCWC	2 cut(s)	483, 1581
BsiHKCI	CYCGRG	2 cut(s)	397, 1250
BslFI	GGGAC	2 cut(s)	725, 1156
BslI	CCNNNNNNNGG	9 cut(s)	134, 398, 572, 895, 965, 971, 1270, 1700, 1725
BsmAI	GTCTC	2 cut(s)	904, 1376
BsmFI	GGGAC	2 cut(s)	725, 1156
BsnI	GGCC	9 cut(s)	473, 491, 521, 530, 572, 722, 908, 1408, 1711
Bso31I	GGTCTC	1 cut(s)	904
BsoBI	CYCGRG	2 cut(s)	397, 1250
Bsp120I	GGGCCC	1 cut(s)	489
Bsp1286I	GDGCHC	4 cut(s)	483, 493, 939, 1581
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
Bsp1720I	GCTNAGC	1 cut(s)	1538
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	9 cut(s)	473, 491, 521, 530, 572, 722, 908, 1408, 1711
BspCNI	CTCAG	3 cut(s)	1042, 1076, 1530
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	4 cut(s)	791, 1135, 1346, 1405
BspLI	GGNNCC	6 cut(s)	402, 491, 832, 970, 1077, 1692
BspPI	GGATC	4 cut(s)	1016, 1070, 1083, 1270
BspQI	GCTCTTC	2 cut(s)	620, 699
BspT107I	GGYRCC	3 cut(s)	830, 968, 1690
BspTNI	GGTCTC	1 cut(s)	904
BsrBI	CCGCTC	1 cut(s)	1542
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	2 cut(s)	722, 947
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	713
BssAI	RCCGGY	2 cut(s)	722, 947
BssECI	CCNNGG	6 cut(s)	397, 531, 964, 1280, 1344, 1483
BssMI	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
BssNI	GRCGYC	1 cut(s)	969
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	4 cut(s)	415, 518, 1265, 1485
Bst4CI	ACNGT	6 cut(s)	247, 542, 557, 632, 944, 1336
Bst6I	CTCTTC	5 cut(s)	89, 620, 699, 929, 1415
BstACI	GRCGYC	1 cut(s)	969
BstAUI	TGTACA	1 cut(s)	729
BstBAI	YACGTR	2 cut(s)	309, 1582
BstC8I	GCNNGC	9 cut(s)	229, 233, 356, 420, 489, 528, 668, 949, 1644
BstDEI	CTNAG	6 cut(s)	129, 301, 903, 1029, 1063, 1538
BstDSI	CCRYGG	3 cut(s)	531, 1280, 1344
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	436, 1002, 1537
BstFNI	CGCG	4 cut(s)	791, 1135, 1346, 1405
BstH2I	RGCGCY	1 cut(s)	972
BstHHI	GCGC	5 cut(s)	411, 793, 971, 1135, 1405
BstKTI	GATC	6 cut(s)	660, 1024, 1078, 1278, 1467, 1737
BstMAI	GTCTC	2 cut(s)	904, 1376
BstMBI	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
BstMCI	CGRYCG	1 cut(s)	723
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 278, 415, 527, 1439, 1562, 1585
BstNI	CCWGG	4 cut(s)	415, 518, 1265, 1485
BstNSI	RCATGY	2 cut(s)	736, 1117
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	940
BstSLI	GKGCMC	2 cut(s)	493, 1581
BstUI	CGCG	4 cut(s)	791, 1135, 1346, 1405
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	2 cut(s)	102, 507
BstX2I	RGATCY	3 cut(s)	1021, 1075, 1275
BstYI	RGATCY	3 cut(s)	1021, 1075, 1275
BstZI	CGGCCG	1 cut(s)	720
Bsu15I	ATCGAT	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	9 cut(s)	473, 491, 521, 530, 572, 722, 908, 1408, 1711
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	3 cut(s)	531, 1280, 1344
BtrI	CACGTC	1 cut(s)	1270
BtsCI	GGATG	3 cut(s)	436, 1002, 1537
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	4 cut(s)	24, 538, 949, 1474
Cac8I	GCNNGC	9 cut(s)	229, 233, 356, 420, 489, 528, 668, 949, 1644
CfoI	GCGC	5 cut(s)	411, 793, 971, 1135, 1405
Cfr10I	RCCGGY	2 cut(s)	722, 947
Cfr13I	GGNCC	7 cut(s)	314, 401, 489, 490, 520, 535, 1709
Cfr42I	CCGCGG	1 cut(s)	1347
Cfr9I	CCCGGG	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	345
CpoI	CGGWCCG	1 cut(s)	314
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	6 cut(s)	451, 730, 769, 886, 1255, 1261
CspCI	CAANNNNNGTGG	6 cut(s)	358, 393, 590, 625, 808, 843
CspI	CGGWCCG	1 cut(s)	314
CviAII	CATG	8 cut(s)	484, 532, 661, 733, 883, 1048, 1097, 1114
CviQI	GTAC	6 cut(s)	451, 730, 769, 886, 1255, 1261
DdeI	CTNAG	6 cut(s)	129, 301, 903, 1029, 1063, 1538
DinI	GGCGCC	1 cut(s)	970
DpnI	GATC	6 cut(s)	659, 1023, 1077, 1277, 1466, 1736
DpnII	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
EaeI	YGGCCR	2 cut(s)	570, 720
EagI	CGGCCG	1 cut(s)	720
Eam1104I	CTCTTC	5 cut(s)	89, 620, 699, 929, 1415
EarI	CTCTTC	5 cut(s)	89, 620, 699, 929, 1415
EciI	GGCGGA	5 cut(s)	335, 1448, 1571, 1661, 1673
Ecl136II	GAGCTC	1 cut(s)	481
EclXI	CGGCCG	1 cut(s)	720
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	3 cut(s)	483, 493, 939
Eco31I	GGTCTC	1 cut(s)	904
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	3 cut(s)	314, 401, 535
Eco52I	CGGCCG	1 cut(s)	720
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	1307, 1751
Eco72I	CACGTG	2 cut(s)	309, 1582
Eco88I	CYCGRG	2 cut(s)	397, 1250
EcoICRI	GAGCTC	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	4 cut(s)	413, 516, 1263, 1483
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	3 cut(s)	483, 493, 939
EgeI	GGCGCC	1 cut(s)	970
EheI	GGCGCC	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	8 cut(s)	487, 535, 664, 736, 886, 1051, 1100, 1117
FalI	AAGNNNNNCTT	6 cut(s)	98, 130, 122, 154, 1601, 1633
FaqI	GGGAC	2 cut(s)	725, 1156
FatI	CATG	8 cut(s)	483, 531, 660, 732, 882, 1047, 1096, 1113
FauI	CCCGC	4 cut(s)	224, 363, 480, 1535
FbaI	TGATCA	1 cut(s)	1464
FblI	GTMKAC	1 cut(s)	1107
Fnu4HI	GCNGC	5 cut(s)	279, 352, 789, 1406, 1586
FokI	GGATG	3 cut(s)	443, 989, 1544
FriOI	GRGCYC	3 cut(s)	483, 493, 939
Fsp4HI	GCNGC	5 cut(s)	279, 352, 789, 1406, 1586
FspBI	CTAG	2 cut(s)	812, 858
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	5 cut(s)	410, 792, 970, 1134, 1404
GluI	GCNGC	5 cut(s)	279, 352, 789, 1406, 1586
GsaI	CCCAGC	1 cut(s)	526
HaeII	RGCGCY	1 cut(s)	972
HaeIII	GGCC	9 cut(s)	473, 491, 521, 530, 572, 722, 908, 1408, 1711
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	5 cut(s)	411, 793, 971, 1135, 1405
Hin1I	GRCGYC	1 cut(s)	969
Hin1II	CATG	8 cut(s)	487, 535, 664, 736, 886, 1051, 1100, 1117
Hin6I	GCGC	5 cut(s)	409, 791, 969, 1133, 1403
HinP1I	GCGC	5 cut(s)	409, 791, 969, 1133, 1403
HincII	GTYRAC	1 cut(s)	1632
HindII	GTYRAC	1 cut(s)	1632
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	5 cut(s)	861, 1204, 1215, 1229, 1241
HpaI	GTTAAC	1 cut(s)	1632
HphI	GGTGA	8 cut(s)	868, 908, 944, 1085, 1144, 1474, 1693, 1708
Hpy166II	GTNNAC	6 cut(s)	451, 538, 601, 1108, 1579, 1632
Hpy188I	TCNGA	3 cut(s)	583, 1032, 1214
Hpy188III	TCNNGA	9 cut(s)	176, 254, 428, 497, 703, 812, 982, 1017, 1609
Hpy8I	GTNNAC	6 cut(s)	451, 538, 601, 1108, 1579, 1632
Hpy99I	CGWCG	7 cut(s)	479, 557, 680, 956, 1196, 1336, 1375
HpyAV	CCTTC	6 cut(s)	503, 1321, 1419, 1432, 1540, 1700
HpyCH4III	ACNGT	6 cut(s)	247, 542, 557, 632, 944, 1336
HpyCH4IV	ACGT	6 cut(s)	308, 1104, 1269, 1373, 1581, 1685
HpyCH4V	TGCA	3 cut(s)	147, 272, 1579
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 278, 415, 527, 1439, 1562, 1585
HpyF3I	CTNAG	6 cut(s)	129, 301, 903, 1029, 1063, 1538
HpySE526I	ACGT	6 cut(s)	308, 1104, 1269, 1373, 1581, 1685
Hsp92I	GRCGYC	1 cut(s)	969
Hsp92II	CATG	8 cut(s)	487, 535, 664, 736, 886, 1051, 1100, 1117
HspAI	GCGC	5 cut(s)	409, 791, 969, 1133, 1403
KasI	GGCGCC	1 cut(s)	968
KroI	GCCGGC	1 cut(s)	947
KroNI	GCCGGC	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	1464
KspAI	GTTAAC	1 cut(s)	1632
KspI	CCGCGG	1 cut(s)	1347
Kzo9I	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
LguI	GCTCTTC	2 cut(s)	620, 699
LmnI	GCTCC	2 cut(s)	721, 1052
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	3 cut(s)	169, 802, 1516
MaeI	CTAG	2 cut(s)	812, 858
MaeII	ACGT	6 cut(s)	308, 1104, 1269, 1373, 1581, 1685
MaeIII	GTNAC	2 cut(s)	1226, 1681
MalI	GATC	6 cut(s)	659, 1023, 1077, 1277, 1466, 1736
MbiI	CCGCTC	1 cut(s)	1542
MboI	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
MflI	RGATCY	3 cut(s)	1021, 1075, 1275
MhlI	GDGCHC	4 cut(s)	483, 493, 939, 1581
MluCI	AATT	4 cut(s)	117, 191, 820, 1636
Mly113I	GGCGCC	1 cut(s)	969
MlyI	GAGTC	3 cut(s)	1223, 1224, 1250
MmeI	TCCRAC	1 cut(s)	606
MroNI	GCCGGC	1 cut(s)	947
MseI	TTAA	3 cut(s)	116, 1170, 1631
MslI	CAYNNNNRTG	1 cut(s)	881
MspA1I	CMGCKG	1 cut(s)	1346
MvaI	CCWGG	4 cut(s)	415, 518, 1265, 1485
MvnI	CGCG	4 cut(s)	791, 1135, 1346, 1405
MwoI	GCNNNNNNNGC	7 cut(s)	144, 278, 415, 527, 1439, 1562, 1585
NaeI	GCCGGC	1 cut(s)	949
NarI	GGCGCC	1 cut(s)	969
NciI	CCSGG	6 cut(s)	398, 399, 574, 966, 1069, 1567
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
NgoMIV	GCCGGC	1 cut(s)	947
NlaIII	CATG	8 cut(s)	487, 535, 664, 736, 886, 1051, 1100, 1117
NlaIV	GGNNCC	6 cut(s)	402, 491, 832, 970, 1077, 1692
NmuCI	GTSAC	2 cut(s)	1226, 1681
NsbI	TGCGCA	1 cut(s)	410
NspI	RCATGY	2 cut(s)	736, 1117
PciSI	GCTCTTC	2 cut(s)	620, 699
PcsI	WCGNNNNNNNCGW	1 cut(s)	1691
PdiI	GCCGGC	1 cut(s)	949
PfeI	GAWTC	2 cut(s)	861, 1204
PflMI	CCANNNNNTGG	2 cut(s)	895, 1270
PkrI	GCNGC	5 cut(s)	280, 353, 790, 1407, 1587
PleI	GAGTC	3 cut(s)	1223, 1223, 1249
PluTI	GGCGCC	1 cut(s)	972
PmaCI	CACGTG	2 cut(s)	309, 1582
PmlI	CACGTG	2 cut(s)	309, 1582
PpsI	GAGTC	3 cut(s)	1223, 1223, 1249
Ppu21I	YACGTR	2 cut(s)	309, 1582
PshAI	GACNNNNGTC	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	4 cut(s)	413, 516, 1263, 1483
PspCI	CACGTG	2 cut(s)	309, 1582
PspFI	CCCAGC	1 cut(s)	522
PspGI	CCWGG	4 cut(s)	413, 516, 1263, 1483
PspN4I	GGNNCC	6 cut(s)	402, 491, 832, 970, 1077, 1692
PspOMI	GGGCCC	1 cut(s)	489
PspPI	GGNCC	7 cut(s)	314, 401, 489, 490, 520, 535, 1709
PsuI	RGATCY	3 cut(s)	1021, 1075, 1275
RsaI	GTAC	6 cut(s)	452, 731, 770, 887, 1256, 1262
RsaNI	GTAC	6 cut(s)	451, 730, 769, 886, 1255, 1261
RseI	CAYNNNNRTG	1 cut(s)	881
Rsr2I	CGGWCCG	1 cut(s)	314
RsrII	CGGWCCG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	1347
SapI	GCTCTTC	2 cut(s)	620, 699
SaqAI	TTAA	3 cut(s)	116, 1170, 1631
SatI	GCNGC	5 cut(s)	279, 352, 789, 1406, 1586
Sau3AI	GATC	6 cut(s)	657, 1021, 1075, 1275, 1464, 1734
Sau96I	GGNCC	7 cut(s)	314, 401, 489, 490, 520, 535, 1709
SchI	GAGTC	3 cut(s)	1223, 1224, 1250
SduI	GDGCHC	4 cut(s)	483, 493, 939, 1581
SfaNI	GCATC	3 cut(s)	169, 802, 1516
SfcI	CTRYAG	1 cut(s)	940
SfiI	GGCCNNNNNGGCC	1 cut(s)	527
SfoI	GGCGCC	1 cut(s)	970
Sfr303I	CCGCGG	1 cut(s)	1347
SgrBI	CCGCGG	1 cut(s)	1347
SinI	GGWCC	3 cut(s)	314, 401, 535
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	1618
SmoI	CTYRAG	1 cut(s)	1618
Sse9I	AATT	4 cut(s)	117, 191, 820, 1636
SspDI	GGCGCC	1 cut(s)	968
SspMI	CTAG	2 cut(s)	812, 858
SstI	GAGCTC	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	6 cut(s)	247, 542, 557, 632, 944, 1336
TaiI	ACGT	6 cut(s)	311, 1107, 1272, 1376, 1584, 1688
TasI	AATT	4 cut(s)	117, 191, 820, 1636
TatI	WGTACW	2 cut(s)	450, 729
TauI	GCSGC	4 cut(s)	281, 791, 1408, 1588
TfiI	GAWTC	2 cut(s)	861, 1204
Tru1I	TTAA	3 cut(s)	116, 1170, 1631
Tru9I	TTAA	3 cut(s)	116, 1170, 1631
TscAI	CASTG	4 cut(s)	31, 545, 949, 1474
TseFI	GTSAC	2 cut(s)	1226, 1681
TseI	GCWGC	1 cut(s)	351
Tsp45I	GTSAC	2 cut(s)	1226, 1681
TspGWI	ACGGA	2 cut(s)	255, 1214
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	4 cut(s)	31, 545, 949, 1474
Van91I	CCANNNNNTGG	2 cut(s)	895, 1270
VneI	GTGCAC	1 cut(s)	1577
VpaK11BI	GGWCC	3 cut(s)	314, 401, 535
XagI	CCTNNNNNAGG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	1636
XbaI	TCTAGA	1 cut(s)	811
XceI	RCATGY	2 cut(s)	736, 1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XmaI	CCCGGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	1107
XspI	CTAG	2 cut(s)	812, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.