Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

1960183 .. 1962802

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG027200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCAGGCCTTTGGAGGGTGACTGTGAGCTGAAGTTGTTCACATTTGACAGTGATGAAGGCCGGGACACTTTCTGGCATTCTAGCGCACTCATTCTCGGACAGGCACTTGAGGGTTTGTATGGATGTAAACTCTGCATTGGTCCCTGCCACACTGGTAGAGAAGAGGGTTTCTATTATGATGCATTTTATGGTGATTTGGGGTTGAAAGATGAACACTTGAAGCAAATTGAATCAGAAGCAGACAAGGCTGTTAAGGCCAAACAGCCATTTGAGCGCATTCAAGTATCAAGGGATCAAGCACTTGAGATTTTCTCTGATAATAGATTCAAGCGACGGGAAGAAGCGAAAAAATATGATCATAGATTGTTGGGTACAAAGCAGGAGCTGTTCTTTAGTCACCCACTTAGTCCAGGAAGTTGGTTCTTCCTGCCCAATGGCACTCGGATTTATAACAAGCTTATGGAGTTTATAAAGAATCAATACAGAGAAAGAGGATACCAAGAGGTTATGTCGCCAAACATGTACAACATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAAGAGAATATGTTTGTCTCTTTGAGATTGAGAAACAAGAGTTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

206

Amino Acids

24.17

Weight (kDa)

6.33

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	453, 473
AclWI	GGATC	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	2 cut(s)	376, 527
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	5 cut(s)	208, 223, 233, 284, 331
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	3 cut(s)	31, 388, 460
AluI	AGCT	3 cut(s)	31, 388, 460
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	8, 61, 258
ApeKI	GCWGC	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	89, 279
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	32, 206, 392
AvaII	GGWCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	65, 414
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	65, 414
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuEI	CTTGAG	2 cut(s)	131, 326
BpuMI	CCSGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	3 cut(s)	10, 63, 260
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	80, 129
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	2 cut(s)	80, 129
BsmI	GAATGC	2 cut(s)	79, 279
BsnI	GGCC	3 cut(s)	10, 63, 260
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	2 cut(s)	295, 358
BspANI	GGCC	3 cut(s)	10, 63, 260
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	295, 358
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	26, 53
Bst6I	CTCTTC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	89, 279
BstKTI	GATC	2 cut(s)	298, 361
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	295, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 257, 274
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	2 cut(s)	526, 535
BstSCI	CCNGG	2 cut(s)	63, 412
BstV1I	GCAGC	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	10, 63, 260
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	58, 153
Cac8I	GCNNGC	1 cut(s)	8
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	2 cut(s)	89, 279
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	375, 526
CviAII	CATG	3 cut(s)	523, 532, 557
CviJI	RGCY	8 cut(s)	10, 31, 63, 251, 260, 268, 388, 460
CviKI_1	RGCY	8 cut(s)	10, 31, 63, 251, 260, 268, 388, 460
CviQI	GTAC	2 cut(s)	375, 526
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	2 cut(s)	297, 360
DpnII	GATC	2 cut(s)	295, 358
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	187
FaeI	CATG	3 cut(s)	526, 535, 560
FaqI	GGGAC	2 cut(s)	80, 129
FatI	CATG	3 cut(s)	522, 531, 556
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	2 cut(s)	88, 278
GluI	GCNGC	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	10, 63, 260
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	2 cut(s)	89, 279
Hin1II	CATG	3 cut(s)	526, 535, 560
Hin6I	GCGC	2 cut(s)	87, 277
HinP1I	GCGC	2 cut(s)	87, 277
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	233, 327, 478
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	3 cut(s)	32, 206, 392
Hpy166II	GTNNAC	2 cut(s)	42, 131
Hpy188I	TCNGA	4 cut(s)	101, 238, 319, 447
Hpy8I	GTNNAC	2 cut(s)	42, 131
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	26, 53
HpyCH4V	TGCA	4 cut(s)	138, 185, 535, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 257, 274
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	526, 535, 560
HspAI	GCGC	2 cut(s)	87, 277
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	295, 358
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	20, 398
MalI	GATC	2 cut(s)	297, 360
MboI	GATC	2 cut(s)	295, 358
MboII	GAAGA	3 cut(s)	176, 353, 418
MluCI	AATT	2 cut(s)	228, 565
MnlI	CCTC	5 cut(s)	10, 106, 160, 488, 499
Mph1103I	ATGCAT	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	65, 414
Mva1269I	GAATGC	2 cut(s)	79, 279
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	248, 257, 274
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	295, 358
NlaIII	CATG	3 cut(s)	526, 535, 560
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	20, 398
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	2 cut(s)	526, 535
PceI	AGGCCT	1 cut(s)	10
PciI	ACATGT	1 cut(s)	522
PctI	GAATGC	2 cut(s)	79, 279
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	233, 327, 478
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	562
PscI	ACATGT	1 cut(s)	522
PsiI	TTATAA	2 cut(s)	453, 473
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	376, 527
RsaNI	GTAC	2 cut(s)	375, 526
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	2 cut(s)	295, 358
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	65, 414
SetI	ASST	4 cut(s)	33, 390, 462, 510
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	110, 305
SmoI	CTYRAG	2 cut(s)	110, 305
Sse9I	AATT	2 cut(s)	228, 565
SseBI	AGGCCT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	63, 412
TaaI	ACNGT	2 cut(s)	26, 53
TasI	AATT	2 cut(s)	228, 565
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	233, 327, 478
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	58, 160
TseFI	GTSAC	2 cut(s)	20, 398
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	20, 398
TspDTI	ATGAA	2 cut(s)	72, 228
TspRI	CASTG	2 cut(s)	58, 160
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	2 cut(s)	526, 535
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.