Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

1959258 .. 1959410

Gene Structure 153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCTCAGTACAACTACATTCTAGTTGTTGGTGAGGAGGAAGTCAAAACTGGACAGGTGAGCGTACGGGTTAGAGATAAGGGAGCTTCCACAGTAATGAACATGGATAGCCTACTCAAACAATTCAAGGACAAAGTTGAAGCTTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

50

Amino Acids

5.69

Weight (kDa)

6.54

Isoelectric Point (pI)

14.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	2 - 44	6.8e-09	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	11, 66
AgsI	TTSAA	2 cut(s)	127, 140
AluBI	AGCT	2 cut(s)	86, 143
AluI	AGCT	2 cut(s)	86, 143
Asp700I	GAANNNNTTC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	44, 70
BfaI	CTAG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	50
BsiWI	CGTACG	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	10, 65
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	5, 86, 111, 143
CviKI_1	RGCY	4 cut(s)	5, 86, 111, 143
CviQI	GTAC	2 cut(s)	10, 65
DdeI	CTNAG	1 cut(s)	6
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FatI	CATG	1 cut(s)	102
FspBI	CTAG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	141
HphI	GGTGA	2 cut(s)	44, 70
HpyCH4III	ACNGT	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	2 cut(s)	36, 41
MaeI	CTAG	1 cut(s)	23
MluCI	AATT	1 cut(s)	122
MnlI	CCTC	2 cut(s)	28, 31
MroXI	GAANNNNTTC	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	95
NlaIII	CATG	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	144
Pfl23II	CGTACG	1 cut(s)	64
PspLI	CGTACG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	11, 66
RsaNI	GTAC	2 cut(s)	10, 65
RseI	CAYNNNNRTG	1 cut(s)	95
SetI	ASST	3 cut(s)	60, 88, 145
SgeI	CNNG	6 cut(s)	35, 63, 68, 80, 115, 139
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	1 cut(s)	122
TatI	WGTACW	1 cut(s)	9
TspDTI	ATGAA	2 cut(s)	113, 137
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.