Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

2039557 .. 2040228

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG026700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTCTATTTTGGTGTAAATTTCTTTTGCCCCCACTCAAAAACATTTCTCCCTCCGCCACTGTACGGAAAAGCCTTCTCCTCCCTACAACCACCGCCGGCCGCCTCCATGGTGCTGGACAGCGTAATTCCCAAGCGCATCAAGCTCTTCGAGGCCATCCAGGCTGAGCAGCTCGCCCAGCGCCAGGCCCTCCCGTCCGATCCAATCAAGATTAAAATATTGCCGGACGGGAAGGTGAAGGAGGGAAAGAAGTGGGTGACTTCACCTTTCGACGTTGCGAAGGAGGTTTCGAAGAGCTTGGCGTCGAATGCGTTGGTTGCTGAGGTGAATGGGGTACTGTGGGACATGAGCAGGCCTTTGGAGGGTGACTGTGAGCTGAAGCTGTTCACATTTGACAGTGATGAAGGCCGGGACACTTTCTGGCATTCTAGCGCACACATTCTCGGACAGGCACTTGAGGGTTTGTATGGATGTAAACTCTGCATTGGTCCCTGCCACACTGGTAGAGAAGAGGGTTTCCATTATGATGCATTTTATGGTGATTTGGGGTTGAAAGATGGACACTTGAAGCAAATTGAATCAGAAGCAGACATGGCTGTTAAGGCCAAACAGCCATTTGAGCGCATTCAAGTATCAAGGGATCAAGCACTTGAGATTTTCTCTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

223

Amino Acids

24.78

Weight (kDa)

5.7

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	73 - 130	4.4e-17	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 95, 102
AclWI	GGATC	2 cut(s)	194, 648
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	2 cut(s)	65, 336
AfiI	CCNNNNNNNGG	3 cut(s)	65, 184, 362
AgsI	TTSAA	4 cut(s)	553, 568, 578, 629
AjnI	CCWGG	2 cut(s)	159, 183
AluBI	AGCT	5 cut(s)	145, 172, 297, 376, 382
AluI	AGCT	5 cut(s)	145, 172, 297, 376, 382
AlwI	GGATC	2 cut(s)	194, 648
AoxI	GGCC	6 cut(s)	99, 153, 186, 353, 406, 603
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	4 cut(s)	138, 183, 434, 624
AspS9I	GGNCC	2 cut(s)	187, 488
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	6 cut(s)	247, 255, 268, 337, 377, 551
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	488
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	164, 551
BciT130I	CCWGG	2 cut(s)	161, 185
BcnI	CCSGG	1 cut(s)	410
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	102, 170
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	103, 171
Bme1390I	CCNGG	3 cut(s)	161, 185, 410
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	187, 488
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	3 cut(s)	161, 185, 410
BmsI	GCATC	2 cut(s)	147, 517
BplI	GAGNNNNNCTC	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	476, 671
BpuMI	CCSGG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 184, 362
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	161, 185
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	156, 476
BseLI	CCNNNNNNNGG	3 cut(s)	65, 184, 362
BseMII	CTCAG	2 cut(s)	156, 312
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	70
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	6 cut(s)	101, 155, 188, 355, 408, 605
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	98, 224, 409
BslFI	GGGAC	3 cut(s)	356, 425, 474
BslI	CCNNNNNNNGG	3 cut(s)	65, 184, 362
BsmFI	GGGAC	3 cut(s)	356, 425, 474
BsmI	GAATGC	3 cut(s)	313, 424, 624
BsnI	GGCC	6 cut(s)	101, 155, 188, 355, 408, 605
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	199, 640
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	56, 95, 102
BspANI	GGCC	6 cut(s)	101, 155, 188, 355, 408, 605
BspCNI	CTCAG	2 cut(s)	157, 313
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	2 cut(s)	194, 648
BspQI	GCTCTTC	2 cut(s)	152, 287
BspT104I	TTCGAA	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	199, 640
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	161, 185
Bst4CI	ACNGT	4 cut(s)	63, 339, 371, 398
Bst6I	CTCTTC	3 cut(s)	152, 287, 504
BstACI	GRCGYC	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	99, 174, 353
BstDEI	CTNAG	2 cut(s)	165, 321
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	156, 476
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	4 cut(s)	138, 183, 434, 624
BstKTI	GATC	2 cut(s)	202, 643
BstMBI	GATC	2 cut(s)	199, 640
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	8 cut(s)	142, 161, 178, 308, 317, 593, 602, 619
BstNI	CCWGG	2 cut(s)	161, 185
BstSCI	CCNGG	3 cut(s)	159, 183, 408
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	6 cut(s)	101, 155, 188, 355, 408, 605
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	156, 476
BtsIMutI	CAGTG	3 cut(s)	59, 403, 498
Cac8I	GCNNGC	3 cut(s)	99, 174, 353
CfoI	GCGC	4 cut(s)	138, 183, 434, 624
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	187, 488
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	64, 335
CviAII	CATG	3 cut(s)	109, 346, 592
CviQI	GTAC	2 cut(s)	64, 335
DdeI	CTNAG	2 cut(s)	165, 321
DpnI	GATC	2 cut(s)	201, 642
DpnII	GATC	2 cut(s)	199, 640
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	3 cut(s)	152, 287, 504
EarI	CTCTTC	3 cut(s)	152, 287, 504
EciI	GGCGGA	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	488
Eco52I	CGGCCG	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	159, 183
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	112, 349, 595
FaiI	YATR	6 cut(s)	110, 347, 468, 525, 537, 593
FaqI	GGGAC	3 cut(s)	356, 425, 474
FatI	CATG	3 cut(s)	108, 345, 591
Fnu4HI	GCNGC	2 cut(s)	102, 170
FokI	GGATG	2 cut(s)	143, 483
Fsp4HI	GCNGC	2 cut(s)	102, 170
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	4 cut(s)	137, 182, 433, 623
GluI	GCNGC	2 cut(s)	102, 170
GsaI	CCCAGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	6 cut(s)	101, 155, 188, 355, 408, 605
HapII	CCGG	3 cut(s)	98, 224, 409
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	4 cut(s)	138, 183, 434, 624
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	112, 349, 595
Hin6I	GCGC	4 cut(s)	136, 181, 432, 622
HinP1I	GCGC	4 cut(s)	136, 181, 432, 622
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	3 cut(s)	98, 224, 409
HphI	GGTGA	6 cut(s)	247, 255, 268, 337, 377, 551
Hpy166II	GTNNAC	2 cut(s)	387, 476
Hpy188I	TCNGA	4 cut(s)	199, 446, 583, 664
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	387, 476
Hpy99I	CGWCG	2 cut(s)	275, 307
HpyAV	CCTTC	5 cut(s)	85, 226, 232, 274, 398
HpyCH4III	ACNGT	4 cut(s)	63, 339, 371, 398
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	483, 530
HpyF10VI	GCNNNNNNNGC	8 cut(s)	142, 161, 178, 308, 317, 593, 602, 619
HpyF3I	CTNAG	2 cut(s)	165, 321
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	112, 349, 595
HspAI	GCGC	4 cut(s)	136, 181, 432, 622
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	199, 640
LguI	GCTCTTC	2 cut(s)	152, 287
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	147, 517
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	256, 365
MalI	GATC	2 cut(s)	201, 642
MboI	GATC	2 cut(s)	199, 640
MboII	GAAGA	3 cut(s)	139, 304, 521
MluCI	AATT	4 cut(s)	19, 126, 573, 667
Mph1103I	ATGCAT	1 cut(s)	532
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	2 cut(s)	213, 600
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	3 cut(s)	98, 224, 409
MspR9I	CCNGG	3 cut(s)	161, 185, 410
Mva1269I	GAATGC	3 cut(s)	313, 424, 624
MvaI	CCWGG	2 cut(s)	161, 185
MwoI	GCNNNNNNNGC	8 cut(s)	142, 161, 178, 308, 317, 593, 602, 619
NaeI	GCCGGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	199, 640
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	112, 349, 595
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	256, 365
NsiI	ATGCAT	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	355
PciSI	GCTCTTC	2 cut(s)	152, 287
PctI	GAATGC	3 cut(s)	313, 424, 624
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	103, 171
Psp6I	CCWGG	2 cut(s)	159, 183
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	2 cut(s)	159, 183
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	187, 488
RsaI	GTAC	2 cut(s)	65, 336
RsaNI	GTAC	2 cut(s)	64, 335
RseI	CAYNNNNRTG	1 cut(s)	525
SapI	GCTCTTC	2 cut(s)	152, 287
SaqAI	TTAA	2 cut(s)	213, 600
SatI	GCNGC	2 cut(s)	102, 170
Sau3AI	GATC	2 cut(s)	199, 640
Sau96I	GGNCC	2 cut(s)	187, 488
ScrFI	CCNGG	3 cut(s)	161, 185, 410
SfaNI	GCATC	2 cut(s)	147, 517
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	455, 650
SmoI	CTYRAG	2 cut(s)	455, 650
Sse9I	AATT	4 cut(s)	19, 126, 573, 667
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	3 cut(s)	56, 95, 102
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	3 cut(s)	159, 183, 408
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	63, 339, 371, 398
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	150, 270, 290, 305
TasI	AATT	4 cut(s)	19, 126, 573, 667
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	2 cut(s)	213, 600
Tru9I	TTAA	2 cut(s)	213, 600
TscAI	CASTG	3 cut(s)	66, 403, 505
TseFI	GTSAC	2 cut(s)	256, 365
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	256, 365
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	66, 403, 505
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.