Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Forward (+)

25558794 .. 25561248

Gene Structure 2455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAGAGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTTGTTTAACATGTGATGCAAAGGTTCATTCAGCTAATTCACTCTCGGGACGGCATTTACGTACGGTTTTATGTGATTCTTGTAAGAATCAGCCTTGTGTTGTTCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAATGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTATACGGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGATGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTAAACCTAAGGTGCAAAGAGAAGGTGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGGTAGTTCTTCCTTGACAGAACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCGAAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACACTTGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGAACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAGTATGTGAAGATACAATCTGCAGTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAATTTGGAGCTGATCCTGAGCCAATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTGACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCTAAACCAGCTTCATCAACTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACTCAGAGGAAGTAATCTCATTTTGTCCCTCCCTCTCTAACAATACACGTCAAAAGGTCATCACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

356

Amino Acids

40.37

Weight (kDa)

5.31

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	762
AciI	CCGC	2 cut(s)	329, 563
AclWI	GGATC	2 cut(s)	503, 785
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	569
AflIII	ACRYGT	3 cut(s)	107, 819, 1004
AgsI	TTSAA	3 cut(s)	449, 773, 880
AjiI	CACGTC	1 cut(s)	1007
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	8 cut(s)	83, 131, 466, 526, 580, 788, 908, 1067
AluI	AGCT	8 cut(s)	83, 131, 466, 526, 580, 788, 908, 1067
AlwI	GGATC	2 cut(s)	503, 785
Ama87I	CYCGRG	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	518, 635
AsuII	TTCGAA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	866
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BfmI	CTRYAG	1 cut(s)	718
BmeT110I	CYCGRG	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	1007
BmsI	GCATC	3 cut(s)	103, 283, 685
BpiI	GAAGAC	1 cut(s)	866
Bpu10I	CCTNAGC	2 cut(s)	467, 795
Bpu14I	TTCGAA	1 cut(s)	391
BpuEI	CTTGAG	2 cut(s)	913, 1013
Bsa29I	ATCGAT	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	2 cut(s)	569, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse21I	CCTNAGG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	762
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	242, 361
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMII	CTCAG	4 cut(s)	261, 481, 786, 975
BseRI	GAGGAG	1 cut(s)	1070
Bsh1236I	CGCG	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	570, 763
BsiWI	CGTACG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	159, 969
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	159, 969
BsmI	GAATGC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	762
Bsp143I	GATC	4 cut(s)	508, 556, 751, 790
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	2 cut(s)	329, 563
BspCNI	CTCAG	4 cut(s)	262, 480, 787, 974
BspDI	ATCGAT	1 cut(s)	555
BspEI	TCCGGA	1 cut(s)	762
BspFNI	CGCG	1 cut(s)	329
BspMAI	CTGCAG	1 cut(s)	722
BspPI	GGATC	2 cut(s)	503, 785
BspQI	GCTCTTC	2 cut(s)	271, 768
BspT104I	TTCGAA	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	4 cut(s)	508, 556, 751, 790
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	163, 549
Bst6I	CTCTTC	4 cut(s)	271, 468, 768, 1034
BstBAI	YACGTR	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	391
BstDEI	CTNAG	6 cut(s)	270, 405, 467, 531, 795, 961
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	242, 361
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	4 cut(s)	511, 559, 754, 793
BstMBI	GATC	4 cut(s)	508, 556, 751, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 89
BstNSI	RCATGY	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	718
BstSNI	TACGTA	1 cut(s)	158
BstUI	CGCG	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	866
Bsu15I	ATCGAT	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	1007
BtsCI	GGATG	2 cut(s)	242, 361
BtsI	GCAGTG	3 cut(s)	72, 727, 940
BtsIMutI	CAGTG	3 cut(s)	72, 727, 940
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	4 cut(s)	108, 233, 254, 851
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	6 cut(s)	270, 405, 467, 531, 795, 961
DpnI	GATC	4 cut(s)	510, 558, 753, 792
DpnII	GATC	4 cut(s)	508, 556, 751, 790
DraIII	CACNNNGTG	1 cut(s)	623
Eam1104I	CTCTTC	4 cut(s)	271, 468, 768, 1034
EarI	CTCTTC	4 cut(s)	271, 468, 768, 1034
Eco105I	TACGTA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	111, 236, 257, 854
FaqI	GGGAC	2 cut(s)	159, 969
FatI	CATG	4 cut(s)	107, 232, 253, 850
FokI	GGATG	2 cut(s)	249, 368
HapII	CCGG	2 cut(s)	570, 763
Hin1II	CATG	4 cut(s)	111, 236, 257, 854
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	4 cut(s)	173, 184, 442, 626
HpaII	CCGG	2 cut(s)	570, 763
HphI	GGTGA	2 cut(s)	518, 635
Hpy188I	TCNGA	2 cut(s)	271, 964
Hpy188III	TCNNGA	4 cut(s)	144, 446, 763, 794
HpyAV	CCTTC	3 cut(s)	276, 413, 451
HpyCH4III	ACNGT	2 cut(s)	163, 549
HpyCH4IV	ACGT	3 cut(s)	157, 819, 1006
HpyCH4V	TGCA	6 cut(s)	116, 412, 642, 720, 806, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 89
HpyF3I	CTNAG	6 cut(s)	270, 405, 467, 531, 795, 961
HpySE526I	ACGT	3 cut(s)	157, 819, 1006
Hsp92II	CATG	4 cut(s)	111, 236, 257, 854
Kpn2I	TCCGGA	1 cut(s)	762
Kzo9I	GATC	4 cut(s)	508, 556, 751, 790
LguI	GCTCTTC	2 cut(s)	271, 768
LmnI	GCTCC	2 cut(s)	523, 785
LpnPI	CCDG	8 cut(s)	327, 454, 566, 583, 756, 776, 807, 918
LweI	GCATC	3 cut(s)	103, 283, 685
MaeII	ACGT	3 cut(s)	157, 819, 1006
MaeIII	GTNAC	3 cut(s)	722, 812, 956
MalI	GATC	4 cut(s)	510, 558, 753, 792
MboI	GATC	4 cut(s)	508, 556, 751, 790
MfeI	CAATTG	1 cut(s)	801
MluCI	AATT	5 cut(s)	18, 133, 449, 779, 801
MnlI	CCTC	8 cut(s)	285, 321, 497, 616, 958, 997, 1001, 1048
MroI	TCCGGA	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	4 cut(s)	104, 399, 551, 1069
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	2 cut(s)	570, 763
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	644
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	62, 89
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	508, 556, 751, 790
NlaIII	CATG	4 cut(s)	111, 236, 257, 854
NmuCI	GTSAC	2 cut(s)	722, 956
NspI	RCATGY	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	391
PciI	ACATGT	1 cut(s)	107
PciSI	GCTCTTC	2 cut(s)	271, 768
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	4 cut(s)	173, 184, 442, 626
Pfl23II	CGTACG	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	158
PscI	ACATGT	1 cut(s)	107
PspLI	CGTACG	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	2 cut(s)	271, 768
SaqAI	TTAA	4 cut(s)	104, 399, 551, 1069
Sau3AI	GATC	4 cut(s)	508, 556, 751, 790
SfaNI	GCATC	3 cut(s)	103, 283, 685
SfcI	CTRYAG	1 cut(s)	718
SfuI	TTCGAA	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	928, 1028
SmoI	CTYRAG	2 cut(s)	928, 1028
SnaBI	TACGTA	1 cut(s)	158
Sse9I	AATT	5 cut(s)	18, 133, 449, 779, 801
SsiI	CCGC	2 cut(s)	329, 563
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	163, 549
TaiI	ACGT	3 cut(s)	160, 822, 1009
TaqI	TCGA	4 cut(s)	202, 346, 391, 555
TasI	AATT	5 cut(s)	18, 133, 449, 779, 801
TfiI	GAWTC	4 cut(s)	173, 184, 442, 626
Tru1I	TTAA	4 cut(s)	104, 399, 551, 1069
Tru9I	TTAA	4 cut(s)	104, 399, 551, 1069
TscAI	CASTG	3 cut(s)	72, 727, 940
TseFI	GTSAC	2 cut(s)	722, 956
Tsp45I	GTSAC	2 cut(s)	722, 956
TspDTI	ATGAA	5 cut(s)	113, 242, 864, 872, 900
TspRI	CASTG	3 cut(s)	72, 727, 940
XceI	RCATGY	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.