Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

27896068 .. 27898487

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTAGAATTTGTGACTTCTGCTCGACGTCAAGCGCAGCGGTACACTGTAAAGCCGACGTAGCACATCTCTGCCTGTCTTGCGATTCAGAACTTCATTCAGCTAACCAAGTAGTGAACCGTCATCCCCGCACCATCTTATGCGACTCATGCAACCACCTCTCAGCTTATGATGGGTGTCTGGATCACGGCGGCGGCGGGCTTATGTGCCATTTATGTGACCGGAGCCACCTTGTGACGACGTCCCCGGTGCATCAAAGACTTTCAAGTAGCAGTTACAGTTACACGGGTTGCCCGGCTGCCGAGGACTTCGCAGCAATTTGGGGTTTGCAAATGAATCATGATCACATTAGTAGTGCAAGTCATGTGGGGAGCTTGGATATATTGGGCCAGATTCTCGACTTGCAAAGGACTCAGTCGACTGTTCCTCTTGGACTGTGCAGCAATAAAACTAGCCAGCTGCAGTCTGACAAGATGCAAGACCAGCTTAGGGTTTCTGATGATGATCCACATATACCTGATGATGAATACCTAGCATTCCTGAACTTGGAAGAACTAATTGGAGACGAAGATGATCAAGATCTTATTGTGAAAACTCAGCAGCTACTTGATGATCCCAATCTAGATACGGCTGCAGCCTCCAAGGACGGTCGGACGGAAAGTTCATCTCTTCCCGCCAATGGATCTTCATGTTCATTGCCGTCGTCGGTATCCTGCAATACATTCAGCAGTAGTAGTATGGTTTCACAAGGTGTCAAGGGTGAACAAGTTTTTGACGCCAGAGCAAATGCCATGATGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTACGAAAGGAAAATTCGATATCAAAGGAAGAAAGCCATAGCGGATTCACGTAAACGGGTGAGAGGTCGATTTGCGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

304

Amino Acids

33.28

Weight (kDa)

6.25

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	261 - 303	7.8e-12	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	32, 245
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	7 cut(s)	41, 130, 192, 195, 198, 675, 869
AclWI	GGATC	4 cut(s)	192, 500, 608, 691
AcsI	RAATTY	2 cut(s)	9, 840
AcyI	GRCGYC	3 cut(s)	29, 242, 777
AdeI	CACNNNGTG	2 cut(s)	235, 752
AfaI	GTAC	3 cut(s)	45, 803, 830
AfiI	CCNNNNNNNGG	4 cut(s)	490, 547, 680, 798
AgsI	TTSAA	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AloI	GAACNNNNNNTCC	2 cut(s)	646, 678
AluBI	AGCT	6 cut(s)	104, 167, 375, 460, 487, 604
AluI	AGCT	6 cut(s)	104, 167, 375, 460, 487, 604
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	4 cut(s)	192, 500, 608, 691
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	8 cut(s)	38, 299, 314, 441, 460, 601, 632, 635
ApoI	RAATTY	2 cut(s)	9, 840
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	2 cut(s)	248, 296
AsuHPI	GGTGA	2 cut(s)	773, 898
BauI	CACGAG	1 cut(s)	822
BbvI	GCAGC	8 cut(s)	50, 286, 326, 447, 453, 613, 619, 647
BccI	CCATC	2 cut(s)	143, 167
BceAI	ACGGC	3 cut(s)	205, 645, 685
BciVI	GTATCC	1 cut(s)	721
BclI	TGATCA	2 cut(s)	343, 574
BcnI	CCSGG	2 cut(s)	248, 296
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	4 cut(s)	6, 453, 533, 623
BfmI	CTRYAG	2 cut(s)	461, 633
BfuI	GTATCC	1 cut(s)	721
BglII	AGATCT	1 cut(s)	580
Bme1390I	CCNGG	2 cut(s)	248, 296
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	248, 296
BmsI	GCATC	2 cut(s)	262, 465
Bpu10I	CCTNAGC	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	248, 296
BsaAI	YACGTR	1 cut(s)	878
BsaBI	GATNNNNATC	3 cut(s)	504, 579, 618
BsaHI	GRCGYC	3 cut(s)	29, 242, 777
BsaJI	CCNNGG	3 cut(s)	246, 303, 642
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	4 cut(s)	490, 547, 680, 798
Bse3DI	GCAATG	1 cut(s)	695
Bse8I	GATNNNNATC	3 cut(s)	504, 579, 618
BseDI	CCNNGG	3 cut(s)	246, 303, 642
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	3 cut(s)	504, 579, 618
BseLI	CCNNNNNNNGG	4 cut(s)	490, 547, 680, 798
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	3 cut(s)	177, 428, 611
BseXI	GCAGC	8 cut(s)	50, 286, 326, 447, 453, 613, 619, 647
BsgI	GTGCAG	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	652
BsiSI	CCGG	3 cut(s)	223, 248, 296
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	4 cut(s)	490, 547, 680, 798
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	2 cut(s)	536, 817
BsnI	GGCC	1 cut(s)	390
Bsp143I	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
BspACI	CCGC	7 cut(s)	41, 130, 192, 195, 198, 675, 869
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	3 cut(s)	176, 427, 610
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	227
BspMAI	CTGCAG	2 cut(s)	465, 637
BspPI	GGATC	4 cut(s)	192, 500, 608, 691
BsrDI	GCAATG	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	246, 303, 642
BssMI	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
BssNI	GRCGYC	3 cut(s)	29, 242, 777
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	6 cut(s)	50, 122, 281, 424, 438, 650
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	3 cut(s)	29, 242, 777
BstBAI	YACGTR	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	200, 458
BstDEI	CTNAG	4 cut(s)	163, 414, 488, 597
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	7 cut(s)	187, 346, 508, 577, 583, 616, 686
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
BstMCI	CGRYCG	1 cut(s)	652
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 81, 150, 484, 814
BstSCI	CCNGG	2 cut(s)	246, 294
BstSFI	CTRYAG	2 cut(s)	461, 633
BstV1I	GCAGC	8 cut(s)	50, 286, 326, 447, 453, 613, 619, 647
BstX2I	RGATCY	2 cut(s)	580, 683
BstYI	RGATCY	2 cut(s)	580, 683
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	200, 458
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	3 cut(s)	44, 802, 829
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	5 cut(s)	150, 341, 365, 690, 793
CviQI	GTAC	3 cut(s)	44, 802, 829
DdeI	CTNAG	4 cut(s)	163, 414, 488, 597
DpnI	GATC	7 cut(s)	186, 345, 507, 576, 582, 615, 685
DpnII	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
DraIII	CACNNNGTG	2 cut(s)	235, 752
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	848
EcoRV	GATATC	1 cut(s)	848
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	5 cut(s)	153, 344, 368, 693, 796
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	5 cut(s)	149, 340, 364, 689, 792
FauI	CCCGC	3 cut(s)	137, 191, 682
FbaI	TGATCA	2 cut(s)	343, 574
FblI	GTMKAC	1 cut(s)	419
FokI	GGATG	1 cut(s)	111
FspBI	CTAG	4 cut(s)	6, 453, 533, 623
GlaI	GCGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	3 cut(s)	223, 248, 296
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	3 cut(s)	29, 242, 777
Hin1II	CATG	5 cut(s)	153, 344, 368, 693, 796
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	6 cut(s)	86, 146, 337, 394, 412, 872
HpaII	CCGG	3 cut(s)	223, 248, 296
HphI	GGTGA	2 cut(s)	773, 898
Hpy166II	GTNNAC	6 cut(s)	46, 118, 420, 764, 829, 881
Hpy188I	TCNGA	4 cut(s)	91, 469, 499, 654
Hpy188III	TCNNGA	6 cut(s)	182, 341, 398, 541, 578, 623
Hpy8I	GTNNAC	6 cut(s)	46, 118, 420, 764, 829, 881
Hpy99I	CGWCG	5 cut(s)	31, 62, 244, 706, 709
HpyCH4III	ACNGT	6 cut(s)	50, 122, 281, 424, 438, 650
HpyCH4IV	ACGT	4 cut(s)	29, 60, 242, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 81, 150, 484, 814
HpyF3I	CTNAG	4 cut(s)	163, 414, 488, 597
HpySE526I	ACGT	4 cut(s)	29, 60, 242, 877
Hsp92I	GRCGYC	3 cut(s)	29, 242, 777
Hsp92II	CATG	5 cut(s)	153, 344, 368, 693, 796
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	2 cut(s)	343, 574
Kzo9I	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
LmnI	GCTCC	2 cut(s)	225, 372
Lsp1109I	GCAGC	8 cut(s)	50, 286, 326, 447, 453, 613, 619, 647
LweI	GCATC	2 cut(s)	262, 465
MaeI	CTAG	4 cut(s)	6, 453, 533, 623
MaeII	ACGT	4 cut(s)	29, 60, 242, 877
MaeIII	GTNAC	5 cut(s)	14, 218, 235, 275, 281
MalI	GATC	7 cut(s)	186, 345, 507, 576, 582, 615, 685
MboI	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
MboII	GAAGA	6 cut(s)	563, 581, 662, 678, 823, 868
MflI	RGATCY	2 cut(s)	580, 683
MluCI	AATT	5 cut(s)	9, 318, 558, 840, 907
MlyI	GAGTC	2 cut(s)	140, 406
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	6 cut(s)	170, 298, 438, 649, 792, 884
MseI	TTAA	1 cut(s)	910
MslI	CAYNNNNRTG	2 cut(s)	216, 822
MspA1I	CMGCKG	2 cut(s)	41, 460
MspI	CCGG	3 cut(s)	223, 248, 296
MspR9I	CCNGG	2 cut(s)	248, 296
Mva1269I	GAATGC	2 cut(s)	536, 817
MwoI	GCNNNNNNNGC	5 cut(s)	62, 81, 150, 484, 814
NciI	CCSGG	2 cut(s)	248, 296
NdeII	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
NlaIII	CATG	5 cut(s)	153, 344, 368, 693, 796
NlaIV	GGNNCC	1 cut(s)	227
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	3 cut(s)	14, 218, 235
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	2 cut(s)	536, 817
PfeI	GAWTC	4 cut(s)	86, 337, 394, 872
PflFI	GACNNNGTC	2 cut(s)	241, 415
PleI	GAGTC	2 cut(s)	140, 406
PpsI	GAGTC	2 cut(s)	140, 406
Ppu21I	YACGTR	1 cut(s)	878
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	388
PstI	CTGCAG	2 cut(s)	465, 637
PsuI	RGATCY	2 cut(s)	580, 683
PsyI	GACNNNGTC	2 cut(s)	241, 415
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	3 cut(s)	45, 803, 830
RsaNI	GTAC	3 cut(s)	44, 802, 829
RseI	CAYNNNNRTG	2 cut(s)	216, 822
SalI	GTCGAC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	910
Sau3AI	GATC	7 cut(s)	184, 343, 505, 574, 580, 613, 683
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	140, 406
ScrFI	CCNGG	2 cut(s)	248, 296
SfaNI	GCATC	2 cut(s)	262, 465
SfcI	CTRYAG	2 cut(s)	461, 633
SmiMI	CAYNNNNRTG	2 cut(s)	216, 822
Sse9I	AATT	5 cut(s)	9, 318, 558, 840, 907
SsiI	CCGC	7 cut(s)	41, 130, 192, 195, 198, 675, 869
SspMI	CTAG	4 cut(s)	6, 453, 533, 623
StyD4I	CCNGG	2 cut(s)	246, 294
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	6 cut(s)	50, 122, 281, 424, 438, 650
TaiI	ACGT	4 cut(s)	32, 63, 245, 880
TaqI	TCGA	5 cut(s)	26, 399, 419, 844, 895
TasI	AATT	5 cut(s)	9, 318, 558, 840, 907
TauI	GCSGC	2 cut(s)	195, 198
TfiI	GAWTC	4 cut(s)	86, 337, 394, 872
Tru1I	TTAA	1 cut(s)	910
Tru9I	TTAA	1 cut(s)	910
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	3 cut(s)	14, 218, 235
TseI	GCWGC	8 cut(s)	38, 299, 314, 441, 460, 601, 632, 635
Tsp45I	GTSAC	3 cut(s)	14, 218, 235
TspDTI	ATGAA	6 cut(s)	86, 350, 540, 654, 678, 684
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	1 cut(s)	53
Tth111I	GACNNNGTC	2 cut(s)	241, 415
XapI	RAATTY	2 cut(s)	9, 840
XbaI	TCTAGA	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	4 cut(s)	6, 453, 533, 623
ZraI	GACGTC	2 cut(s)	30, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.