Rh4DG333300

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001104
Physical Location & Seq
Reverse (-)
55611565 .. 55612356
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG333300.1

Sequence Viewer

Length: 273 bp
ATGATTGTCAATCTCAATGTCAACAACGCCCACCATCAGCTGCGATCTGAAAAGATGCAAGACCAGCTTGGGGTTTGTGATGATGATTCAAATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAGATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAACGGCAATTATCACAATCTAGACATGCATGCAAAGGAAAATTCGATATCAAAAGAGGAAAGCCATAGCTGA

Protein Analysis

90

Amino Acids

10.33

Weight (kDa)

4.33

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 70, 127
AgsI TTSAA 1 cut(s) 90
AluBI AGCT 4 cut(s) 40, 67, 184, 270
AluI AGCT 4 cut(s) 40, 67, 184, 270
Alw26I GTCTC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 40, 184
ApoI RAATTY 1 cut(s) 241
BbvI GCAGC 2 cut(s) 27, 171
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 220
BclI TGATCA 2 cut(s) 154, 193
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 113, 221
BglII AGATCT 1 cut(s) 160
BisI GCNGC 2 cut(s) 41, 185
BlsI GCNGC 2 cut(s) 42, 186
BmsI GCATC 1 cut(s) 45
BsaBI GATNNNNATC 2 cut(s) 108, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 127
Bse8I GATNNNNATC 2 cut(s) 108, 159
BseJI GATNNNNATC 2 cut(s) 108, 159
BseLI CCNNNNNNNGG 2 cut(s) 70, 127
BseMII CTCAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 27, 171
BslI CCNNNNNNNGG 2 cut(s) 70, 127
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 44, 154, 160, 193
BspCNI CTCAG 1 cut(s) 162
BssMI GATC 4 cut(s) 44, 154, 160, 193
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 170
BstKTI GATC 4 cut(s) 47, 157, 163, 196
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 44, 154, 160, 193
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNSI RCATGY 2 cut(s) 229, 233
BstV1I GCAGC 2 cut(s) 27, 171
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 184
CviAII CATG 2 cut(s) 226, 230
CviJI RGCY 5 cut(s) 40, 67, 184, 264, 270
CviKI_1 RGCY 5 cut(s) 40, 67, 184, 264, 270
DdeI CTNAG 1 cut(s) 170
DpnI GATC 4 cut(s) 46, 156, 162, 195
DpnII GATC 4 cut(s) 44, 154, 160, 193
Eco32I GATATC 1 cut(s) 249
EcoRV GATATC 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 229, 233
FaiI YATR 4 cut(s) 95, 227, 231, 267
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 225, 229
FbaI TGATCA 2 cut(s) 154, 193
Fnu4HI GCNGC 2 cut(s) 41, 185
Fsp4HI GCNGC 2 cut(s) 41, 185
FspBI CTAG 2 cut(s) 113, 221
GluI GCNGC 2 cut(s) 41, 185
Hin1II CATG 2 cut(s) 229, 233
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 49, 143, 171
Hpy188III TCNNGA 3 cut(s) 121, 158, 221
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 58, 229, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 2 cut(s) 229, 233
Ksp22I TGATCA 2 cut(s) 154, 193
Kzo9I GATC 4 cut(s) 44, 154, 160, 193
LpnPI CCDG 4 cut(s) 77, 111, 134, 191
Lsp1109I GCAGC 2 cut(s) 27, 171
LweI GCATC 1 cut(s) 45
MaeI CTAG 2 cut(s) 113, 221
MalI GATC 4 cut(s) 46, 156, 162, 195
MboI GATC 4 cut(s) 44, 154, 160, 193
MboII GAAGA 2 cut(s) 143, 161
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 208, 241
MnlI CCTC 1 cut(s) 250
Mph1103I ATGCAT 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 4 cut(s) 44, 154, 160, 193
NlaIII CATG 2 cut(s) 229, 233
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 2 cut(s) 229, 233
PaeI GCATGC 1 cut(s) 233
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 42, 186
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 40
SatI GCNGC 2 cut(s) 41, 185
Sau3AI GATC 4 cut(s) 44, 154, 160, 193
SetI ASST 5 cut(s) 42, 69, 100, 186, 272
SfaNI GCATC 1 cut(s) 45
SphI GCATGC 1 cut(s) 233
Sse9I AATT 2 cut(s) 208, 241
SspMI CTAG 2 cut(s) 113, 221
TaqI TCGA 1 cut(s) 245
TasI AATT 2 cut(s) 208, 241
TfiI GAWTC 1 cut(s) 86
TseI GCWGC 2 cut(s) 40, 184
XapI RAATTY 1 cut(s) 241
XbaI TCTAGA 1 cut(s) 220
XceI RCATGY 2 cut(s) 229, 233
XspI CTAG 2 cut(s) 113, 221
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.