Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00262

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

4835 .. 7294

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGAAAATTTGTGACTTTTGCTCGACCTCAAGCGGAGCTGTACACTGTAAAGCCGATGCGGCACATCTCTGCCTGTCTTGCAATGCAAAACTTCATTCAGCTAACCAAGGAGTGAACTGGCATCCCCGTACCATCTTATACGACTCCGGCAACTACCTCTCAGCTTATGTTGGCTGTTTGGATCACGGCAGCGGTGACGGTGGCATCGAGCTTATGTGCCAGTACTTGTGTGACCGGAACCACCATGTGACGACATCCCAGGTGCATCAGAGACTTTCAATCAACAGTTACACGGGTTGCCCGGCTGCCGAGGACTTAGCAGCAATTTGGGGTTTGCAAGTGAATCATGATCACACTAGTAGTACAAGTCATGTGGGTAGCTTGGATATTTTGGGCCAGATTCTCGACTTGCAAATGATTCAGACTAGTGTTCCTCTGTTCCTCTTGGACTGTGCAGCAATACAACTAGTCAGGTTAAAGTTGACTGTGACTTTTTCCAATGAAAATGCGATAAATTCTGTTAGTTCATTTGTTGGGTCCTCCCATATTCCATTCAAATTTTCTTGGTTCCATTTTTGCCTTGATCACGAATTCATGATTGTCAATCTCAATGTCAACAACGCCCACCATCAGCTGCGATCTGAAAAGATGCAAGACCAGCTTGGGGTTTGTGATGATGATTCAAATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAAATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAACGGCAATTATCACAATCTAGATACGGCGGCAGCCTCCATGGACGGTCCGAGGGAAAGCTCTTCTATTCCTGTCAATGGATCTTTATGTTCGCCTACTCGTCACAATGCCGTGATGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTATGAAAGGAAAATTCGATATCAAAGAGAGGAAGCCATAGCTGATACACGTAAGCGGGTGGGAGGTCGATTTGCAAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

342

Amino Acids

38.06

Weight (kDa)

5.95

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	300 - 342	1.8e-11	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	36, 62, 195, 827, 1000
AclWI	GGATC	2 cut(s)	192, 886
AcsI	RAATTY	5 cut(s)	9, 517, 560, 593, 957
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	5 cut(s)	45, 133, 227, 367, 920
AfiI	CCNNNNNNNGG	4 cut(s)	667, 724, 875, 915
AflIII	ACRYGT	1 cut(s)	992
AgsI	TTSAA	3 cut(s)	282, 559, 687
AhlI	ACTAGT	3 cut(s)	359, 428, 469
AjnI	CCWGG	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	268, 735
AlwI	GGATC	2 cut(s)	192, 886
AlwNI	CAGNNNCTG	1 cut(s)	781
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	7 cut(s)	192, 308, 323, 458, 637, 781, 830
ApoI	RAATTY	5 cut(s)	9, 517, 560, 593, 957
AspS9I	GGNCC	3 cut(s)	397, 540, 845
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	540, 845
BauI	CACGAG	1 cut(s)	939
BbvI	GCAGC	7 cut(s)	204, 295, 335, 470, 624, 768, 842
BccI	CCATC	2 cut(s)	143, 639
BceAI	ACGGC	4 cut(s)	205, 817, 840, 893
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	4 cut(s)	352, 586, 751, 790
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	268, 735
BcuI	ACTAGT	3 cut(s)	359, 428, 469
BfaI	CTAG	5 cut(s)	360, 429, 470, 710, 818
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	9 cut(s)	63, 193, 309, 324, 459, 638, 782, 828, 831
BlsI	GCNGC	9 cut(s)	64, 194, 310, 325, 460, 639, 783, 829, 832
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	263, 305
Bme18I	GGWCC	2 cut(s)	540, 845
BmgT120I	GGNCC	3 cut(s)	397, 540, 845
BmiI	GGNNCC	3 cut(s)	242, 541, 572
BmrFI	CCNGG	2 cut(s)	263, 305
BmsI	GCATC	5 cut(s)	49, 133, 216, 277, 642
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	995
BsaBI	GATNNNNATC	2 cut(s)	705, 756
BsaJI	CCNNGG	5 cut(s)	109, 261, 312, 837, 848
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	4 cut(s)	667, 724, 875, 915
Bse1I	ACTGG	2 cut(s)	125, 223
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	2 cut(s)	705, 756
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	5 cut(s)	109, 261, 312, 837, 848
BseGI	GGATG	2 cut(s)	124, 257
BseJI	GATNNNNATC	2 cut(s)	705, 756
BseLI	CCNNNNNNNGG	4 cut(s)	667, 724, 875, 915
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	177, 758
BseNI	ACTGG	2 cut(s)	125, 223
BseXI	GCAGC	7 cut(s)	204, 295, 335, 470, 624, 768, 842
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	150, 238, 305
BslI	CCNNNNNNNGG	4 cut(s)	667, 724, 875, 915
BsmAI	GTCTC	2 cut(s)	268, 735
BsmBI	CGTCTC	1 cut(s)	735
BsmI	GAATGC	2 cut(s)	713, 934
BsnI	GGCC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
Bsp19I	CCATGG	1 cut(s)	837
BspACI	CCGC	5 cut(s)	36, 62, 195, 827, 1000
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	2 cut(s)	176, 759
BspHI	TCATGA	2 cut(s)	349, 597
BspLI	GGNNCC	3 cut(s)	242, 541, 572
BspPI	GGATC	2 cut(s)	192, 886
BspQI	GCTCTTC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	125, 223
BssECI	CCNNGG	5 cut(s)	109, 261, 312, 837, 848
BssMI	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	2 cut(s)	109, 837
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	6 cut(s)	50, 203, 290, 455, 490, 845
Bst6I	CTCTTC	1 cut(s)	865
BstAUI	TGTACA	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	995
BstC8I	GCNNGC	1 cut(s)	1021
BstDEI	CTNAG	3 cut(s)	163, 319, 767
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	2 cut(s)	124, 257
BstKTI	GATC	8 cut(s)	187, 355, 589, 644, 754, 760, 793, 881
BstMAI	GTCTC	2 cut(s)	268, 735
BstMBI	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 81, 661, 931
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	261, 303
BstV1I	GCAGC	7 cut(s)	204, 295, 335, 470, 624, 768, 842
BstX2I	RGATCY	2 cut(s)	757, 878
BstYI	RGATCY	2 cut(s)	757, 878
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	837
BtsCI	GGATG	2 cut(s)	124, 257
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	1021
CaiI	CAGNNNCTG	1 cut(s)	781
CciI	TCATGA	2 cut(s)	349, 597
Cfr13I	GGNCC	3 cut(s)	397, 540, 845
CpoI	CGGWCCG	1 cut(s)	845
Csp6I	GTAC	5 cut(s)	44, 132, 226, 366, 919
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CspI	CGGWCCG	1 cut(s)	845
CviAII	CATG	5 cut(s)	248, 350, 374, 598, 838
CviQI	GTAC	5 cut(s)	44, 132, 226, 366, 919
DdeI	CTNAG	3 cut(s)	163, 319, 767
DpnI	GATC	8 cut(s)	186, 354, 588, 643, 753, 759, 792, 880
DpnII	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
DraIII	CACNNNGTG	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	865
EarI	CTCTTC	1 cut(s)	865
Eco130I	CCWWGG	2 cut(s)	109, 837
Eco32I	GATATC	1 cut(s)	965
Eco47I	GGWCC	2 cut(s)	540, 845
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	965
EcoT14I	CCWWGG	2 cut(s)	109, 837
ErhI	CCWWGG	2 cut(s)	109, 837
Esp3I	CGTCTC	1 cut(s)	735
FaeI	CATG	5 cut(s)	251, 353, 377, 601, 841
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FatI	CATG	5 cut(s)	247, 349, 373, 597, 837
FauI	CCCGC	1 cut(s)	993
FbaI	TGATCA	4 cut(s)	352, 586, 751, 790
Fnu4HI	GCNGC	9 cut(s)	63, 193, 309, 324, 459, 638, 782, 828, 831
FokI	GGATG	2 cut(s)	111, 244
Fsp4HI	GCNGC	9 cut(s)	63, 193, 309, 324, 459, 638, 782, 828, 831
FspBI	CTAG	5 cut(s)	360, 429, 470, 710, 818
GluI	GCNGC	9 cut(s)	63, 193, 309, 324, 459, 638, 782, 828, 831
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	3 cut(s)	150, 238, 305
Hin1II	CATG	5 cut(s)	251, 353, 377, 601, 841
HincII	GTYRAC	2 cut(s)	486, 619
HindII	GTYRAC	2 cut(s)	486, 619
HinfI	GANTC	5 cut(s)	146, 346, 403, 421, 683
HpaII	CCGG	3 cut(s)	150, 238, 305
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	4 cut(s)	46, 118, 486, 619
Hpy188I	TCNGA	6 cut(s)	273, 426, 646, 740, 768, 849
Hpy188III	TCNNGA	7 cut(s)	350, 407, 590, 598, 718, 755, 818
Hpy8I	GTNNAC	4 cut(s)	46, 118, 486, 619
HpyCH4III	ACNGT	6 cut(s)	50, 203, 290, 455, 490, 845
HpyCH4IV	ACGT	1 cut(s)	994
HpyCH4V	TGCA	8 cut(s)	84, 89, 268, 340, 415, 458, 655, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 81, 661, 931
HpyF3I	CTNAG	3 cut(s)	163, 319, 767
HpySE526I	ACGT	1 cut(s)	994
Hsp92II	CATG	5 cut(s)	251, 353, 377, 601, 841
Ksp22I	TGATCA	4 cut(s)	352, 586, 751, 790
Kzo9I	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
LguI	GCTCTTC	1 cut(s)	865
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	7 cut(s)	204, 295, 335, 470, 624, 768, 842
LweI	GCATC	5 cut(s)	49, 133, 216, 277, 642
MaeI	CTAG	5 cut(s)	360, 429, 470, 710, 818
MaeII	ACGT	1 cut(s)	994
MaeIII	GTNAC	7 cut(s)	14, 197, 233, 250, 290, 490, 899
MalI	GATC	8 cut(s)	186, 354, 588, 643, 753, 759, 792, 880
MboI	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
MboII	GAAGA	3 cut(s)	740, 852, 940
MflI	RGATCY	2 cut(s)	757, 878
MluCI	AATT	8 cut(s)	9, 327, 517, 560, 593, 805, 957, 1024
MlyI	GAGTC	1 cut(s)	140
MseI	TTAA	2 cut(s)	479, 1027
MslI	CAYNNNNRTG	1 cut(s)	939
MspA1I	CMGCKG	2 cut(s)	195, 637
MspI	CCGG	3 cut(s)	150, 238, 305
MspR9I	CCNGG	2 cut(s)	263, 305
Mva1269I	GAATGC	2 cut(s)	713, 934
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	62, 81, 661, 931
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
NlaIII	CATG	5 cut(s)	251, 353, 377, 601, 841
NlaIV	GGNNCC	3 cut(s)	242, 541, 572
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	6 cut(s)	14, 197, 233, 250, 490, 899
PagI	TCATGA	2 cut(s)	349, 597
PciSI	GCTCTTC	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	2 cut(s)	713, 934
PfeI	GAWTC	4 cut(s)	346, 403, 421, 683
PkrI	GCNGC	9 cut(s)	64, 194, 310, 325, 460, 639, 783, 829, 832
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	995
PpuMI	RGGWCCY	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	242, 541, 572
PspPI	GGNCC	3 cut(s)	397, 540, 845
PspPPI	RGGWCCY	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	757, 878
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	5 cut(s)	45, 133, 227, 367, 920
RsaNI	GTAC	5 cut(s)	44, 132, 226, 366, 919
RseI	CAYNNNNRTG	1 cut(s)	939
Rsr2I	CGGWCCG	1 cut(s)	845
RsrII	CGGWCCG	1 cut(s)	845
SapI	GCTCTTC	1 cut(s)	865
SaqAI	TTAA	2 cut(s)	479, 1027
SatI	GCNGC	9 cut(s)	63, 193, 309, 324, 459, 638, 782, 828, 831
Sau3AI	GATC	8 cut(s)	184, 352, 586, 641, 751, 757, 790, 878
Sau96I	GGNCC	3 cut(s)	397, 540, 845
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	263, 305
SfaNI	GCATC	5 cut(s)	49, 133, 216, 277, 642
SinI	GGWCC	2 cut(s)	540, 845
SmiMI	CAYNNNNRTG	1 cut(s)	939
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	3 cut(s)	359, 428, 469
Sse9I	AATT	8 cut(s)	9, 327, 517, 560, 593, 805, 957, 1024
SsiI	CCGC	5 cut(s)	36, 62, 195, 827, 1000
SspMI	CTAG	5 cut(s)	360, 429, 470, 710, 818
StyD4I	CCNGG	2 cut(s)	261, 303
StyI	CCWWGG	2 cut(s)	109, 837
TaaI	ACNGT	6 cut(s)	50, 203, 290, 455, 490, 845
TaiI	ACGT	1 cut(s)	997
TaqI	TCGA	5 cut(s)	26, 210, 408, 961, 1012
TasI	AATT	8 cut(s)	9, 327, 517, 560, 593, 805, 957, 1024
TatI	WGTACW	3 cut(s)	43, 225, 365
TauI	GCSGC	2 cut(s)	65, 830
TfiI	GAWTC	4 cut(s)	346, 403, 421, 683
Tru1I	TTAA	2 cut(s)	479, 1027
Tru9I	TTAA	2 cut(s)	479, 1027
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	6 cut(s)	14, 197, 233, 250, 490, 899
TseI	GCWGC	7 cut(s)	192, 308, 323, 458, 637, 781, 830
Tsp45I	GTSAC	6 cut(s)	14, 197, 233, 250, 490, 899
TspDTI	ATGAA	5 cut(s)	86, 519, 519, 586, 963
TspRI	CASTG	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	540, 845
XapI	RAATTY	5 cut(s)	9, 517, 560, 593, 957
XbaI	TCTAGA	1 cut(s)	817
XspI	CTAG	5 cut(s)	360, 429, 470, 710, 818
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.