Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

64028763 .. 64029779

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG329800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGAAAATTTGTGACTTTTGCTCGACCTCAAGCGGAGCTGTACACTGTAAAGCCGATGCGGCACATCTCTGCCTGTCTTGCGATGCAAAACTTCATTCAGCTAACCAAGTAGTGAACCGGCATCCCCGTACCATCTTATACGACTCCGGCAACTACCTCTCAGCTTATGTTGGCTGTTTGGATCACGGCAGCGGCGACGGTGGCATCGAGCTTATGTGCCACTTGTGTGACCGGAACCACCATGTGACGACATCCCAGGTGCATCAGAGACTTTCAATCAACAGTTACACGGGTTGCCCGGCTGCCGAGGACTTAGCAGCAATTTGGCGTTTGCAAGTGAATCATGATCACACTAGTAGTACAAGTCATGTGGGGAGCTTGGATATTTTGGGCCAGATTCTCGACTTGCAAATGATTCAGACTAGTGTTCCTCTTGGACTGTGCAGCAATGCAACTAGTCAGGTTAAAGTTGACTGTGACTTTTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

164

Amino Acids

17.71

Weight (kDa)

5.99

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	36, 62, 195
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	3 cut(s)	45, 133, 364
AgsI	TTSAA	1 cut(s)	279
AhlI	ACTAGT	3 cut(s)	356, 425, 458
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	5 cut(s)	41, 104, 167, 214, 381
AluI	AGCT	5 cut(s)	41, 104, 167, 214, 381
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	4 cut(s)	192, 305, 320, 447
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	204, 292, 332, 459
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	265
BcuI	ACTAGT	3 cut(s)	356, 425, 458
BfaI	CTAG	3 cut(s)	357, 426, 459
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	6 cut(s)	63, 193, 196, 306, 321, 448
BlsI	GCNGC	6 cut(s)	64, 194, 197, 307, 322, 449
Bme1390I	CCNGG	2 cut(s)	260, 302
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	2 cut(s)	260, 302
BmsI	GCATC	5 cut(s)	49, 76, 133, 216, 274
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	258, 309
BsaWI	WCCGGW	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	258, 309
BseGI	GGATG	2 cut(s)	124, 254
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	204, 292, 332, 459
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	121, 150, 235, 302
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	184, 349
BspACI	CCGC	3 cut(s)	36, 62, 195
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	258, 309
BssMI	GATC	2 cut(s)	184, 349
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	50, 203, 287, 444, 479
BstAUI	TGTACA	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	163, 316
BstF5I	GGATG	2 cut(s)	124, 254
BstKTI	GATC	2 cut(s)	187, 352
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	2 cut(s)	184, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 204
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	258, 300
BstV1I	GCAGC	4 cut(s)	204, 292, 332, 459
BsuRI	GGCC	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	124, 254
BtsIMutI	CAGTG	1 cut(s)	46
CciI	TCATGA	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	44, 132, 363
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	3 cut(s)	245, 347, 371
CviJI	RGCY	9 cut(s)	41, 56, 104, 167, 177, 214, 305, 381, 396
CviKI_1	RGCY	9 cut(s)	41, 56, 104, 167, 177, 214, 305, 381, 396
CviQI	GTAC	3 cut(s)	44, 132, 363
DdeI	CTNAG	2 cut(s)	163, 316
DpnI	GATC	2 cut(s)	186, 351
DpnII	GATC	2 cut(s)	184, 349
DraIII	CACNNNGTG	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	248, 350, 374
FaiI	YATR	6 cut(s)	142, 171, 218, 246, 348, 372
FatI	CATG	3 cut(s)	244, 346, 370
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	6 cut(s)	63, 193, 196, 306, 321, 448
FokI	GGATG	2 cut(s)	111, 241
Fsp4HI	GCNGC	6 cut(s)	63, 193, 196, 306, 321, 448
FspBI	CTAG	3 cut(s)	357, 426, 459
GluI	GCNGC	6 cut(s)	63, 193, 196, 306, 321, 448
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	4 cut(s)	121, 150, 235, 302
Hin1II	CATG	3 cut(s)	248, 350, 374
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	4 cut(s)	146, 343, 400, 418
HpaII	CCGG	4 cut(s)	121, 150, 235, 302
Hpy166II	GTNNAC	3 cut(s)	46, 118, 475
Hpy188I	TCNGA	2 cut(s)	270, 423
Hpy188III	TCNNGA	2 cut(s)	347, 404
Hpy8I	GTNNAC	3 cut(s)	46, 118, 475
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	5 cut(s)	50, 203, 287, 444, 479
HpyCH4V	TGCA	6 cut(s)	89, 265, 337, 412, 447, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 204
HpyF3I	CTNAG	2 cut(s)	163, 316
Hsp92II	CATG	3 cut(s)	248, 350, 374
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	184, 349
LmnI	GCTCC	2 cut(s)	38, 378
LpnPI	CCDG	9 cut(s)	89, 134, 163, 245, 248, 272, 315, 410, 449
Lsp1109I	GCAGC	4 cut(s)	204, 292, 332, 459
LweI	GCATC	5 cut(s)	49, 76, 133, 216, 274
MaeI	CTAG	3 cut(s)	357, 426, 459
MaeIII	GTNAC	5 cut(s)	14, 230, 247, 287, 479
MalI	GATC	2 cut(s)	186, 351
MboI	GATC	2 cut(s)	184, 349
MluCI	AATT	2 cut(s)	9, 324
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	4 cut(s)	40, 170, 304, 444
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	4 cut(s)	121, 150, 235, 302
MspR9I	CCNGG	2 cut(s)	260, 302
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 204
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	2 cut(s)	184, 349
NlaIII	CATG	3 cut(s)	248, 350, 374
NlaIV	GGNNCC	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	4 cut(s)	14, 230, 247, 479
OliI	CACNNNNGTG	1 cut(s)	228
PagI	TCATGA	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 207
PfeI	GAWTC	3 cut(s)	343, 400, 418
PkrI	GCNGC	6 cut(s)	64, 194, 197, 307, 322, 449
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	394
RsaI	GTAC	3 cut(s)	45, 133, 364
RsaNI	GTAC	3 cut(s)	44, 132, 363
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	6 cut(s)	63, 193, 196, 306, 321, 448
Sau3AI	GATC	2 cut(s)	184, 349
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	260, 302
SetI	ASST	9 cut(s)	32, 43, 106, 162, 169, 216, 264, 383, 468
SfaNI	GCATC	5 cut(s)	49, 76, 133, 216, 274
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	3 cut(s)	356, 425, 458
Sse9I	AATT	2 cut(s)	9, 324
SsiI	CCGC	3 cut(s)	36, 62, 195
SspMI	CTAG	3 cut(s)	357, 426, 459
StyD4I	CCNGG	2 cut(s)	258, 300
TaaI	ACNGT	5 cut(s)	50, 203, 287, 444, 479
TaqI	TCGA	3 cut(s)	26, 210, 405
TasI	AATT	2 cut(s)	9, 324
TatI	WGTACW	2 cut(s)	43, 362
TauI	GCSGC	2 cut(s)	65, 198
TfiI	GAWTC	3 cut(s)	343, 400, 418
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	4 cut(s)	14, 230, 247, 479
TseI	GCWGC	4 cut(s)	192, 305, 320, 447
Tsp45I	GTSAC	4 cut(s)	14, 230, 247, 479
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	9
XspI	CTAG	3 cut(s)	357, 426, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.