Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

55272248 .. 55274574

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGAAATGTTGTGAGTTCTGCAGAGCATTAAGGCCGGTAGTGTACTGTAAAGCTGATGCAGCACATCTTTGCCTATCTTGTGATGCAAAGATCCATTCGGCTAACACAGTTTTCAACCGGCATCAGCGCACTGTCTTATGTGAATCCTGCCAAGGCCGCCCTGCTTATGTTCAGTGTTTGGATCACAGAATGTTTATGTGCAATGCCTGTGACAGGAGCCAGCACACTTACACAGCTTGCCCGTCTGCCAAGGATTTGGCAGCATTGTGGGGTTTCCAATCAAATGAGATAGATAACAAGACTCTATCCACCTCTTGTGGTTCTTGTGACTCGAGTGTGGTAAGCTATGATATTCATGGGCAGTCTTGCTCACAAATTGAATGTCTTTCAGGTGGTGCTCGGTTTGAAATGGGATCGACCAGTAAACAATACGAGATATATTGTAAAGGTGAAGAGCATAAGAAGACTGGTTTTATTCTGCACCAGATACTTGACTTGGAAAGGCTGCAGCTAGCCAAAGGGAATAGCCCTTCAGCACAGAGTGACCTATCTTCTTCAGCACATCATACTTGGAACAGCTTTGATGAGAATCTTGATTGGCATTTACAACACTGCAAGACTACTGGTACTAACTTTCAGCTAAATGAGAGTCCACTTCAGAATCCGAAAGATGATCCTTTGCCATTTCTATTTTCTCAAGCGGAACATTTCCCATCAAATTCAACTATTGGACTTCCATTGCAGACAGAATCCATTTGGCAGTGCAGAAGTCCGGTTCAAAGTAGTCAGCTGTGGTCTCAAAATATGCAAGACCTTGGGGTTTGTGAAGAGCTTGTTTGTCACGACGATTTCAACATACCTGATGTTGATTTGACATTCCGAAATTTCGAGGAACTCTTTGGAGGTGATCAAGATCCTACCAGATTGCTGCTTGATGATAAAGATGTCTCATATTCCTCCATGGAGAGGGACATGTCCCTCGATAAATCAGATGACTGCAATTCAAGAGCAATGGTGGTATGGATTAGGACTTCCACTGTTTCCTTTCTTACGAATGAAATGATGTATCAGAGGCTTCATCCATGTACCTTACTCAACCTGCAGACTTCGACAAAGATACCAGTGCCTGTAACAAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

381

Amino Acids

43.03

Weight (kDa)

5.33

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1110
AciI	CCGC	2 cut(s)	160, 704
AclWI	GGATC	5 cut(s)	88, 192, 424, 671, 911
AcsI	RAATTY	2 cut(s)	721, 886
AcuI	CTGAAG	3 cut(s)	519, 543, 644
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	3 cut(s)	47, 631, 1090
AfiI	CCNNNNNNNGG	2 cut(s)	216, 969
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	7 cut(s)	118, 383, 410, 726, 782, 856, 1008
AluBI	AGCT	8 cut(s)	56, 239, 348, 514, 582, 643, 793, 835
AluI	AGCT	8 cut(s)	56, 239, 348, 514, 582, 643, 793, 835
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	804, 955
AlwI	GGATC	5 cut(s)	88, 192, 424, 671, 911
AlwNI	CAGNNNCTG	1 cut(s)	1130
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	35, 157
ApeKI	GCWGC	5 cut(s)	62, 263, 508, 511, 931
ApoI	RAATTY	2 cut(s)	721, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AspLEI	GCGC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	464, 920
AsuNHI	GCTAGC	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	5 cut(s)	74, 275, 495, 523, 918
BccI	CCATC	1 cut(s)	724
BclI	TGATCA	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	804, 955
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	3 cut(s)	22, 509, 1103
BfuAI	ACCTGC	1 cut(s)	1110
BisI	GCNGC	6 cut(s)	63, 160, 264, 509, 512, 932
BlsI	GCNGC	6 cut(s)	64, 161, 265, 510, 513, 933
BmeT110I	CYCGRG	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	221
BmsI	GCATC	3 cut(s)	49, 76, 133
BmtI	GCTAGC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	684
BsaBI	GATNNNNATC	2 cut(s)	591, 915
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	4 cut(s)	154, 252, 817, 963
BsaWI	WCCGGW	1 cut(s)	775
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 969
Bse118I	RCCGGY	2 cut(s)	37, 120
Bse1I	ACTGG	4 cut(s)	423, 475, 631, 1124
Bse3DI	GCAATG	3 cut(s)	211, 740, 1020
Bse8I	GATNNNNATC	2 cut(s)	591, 915
BseDI	CCNNGG	4 cut(s)	154, 252, 817, 963
BseGI	GGATG	1 cut(s)	1081
BseJI	GATNNNNATC	2 cut(s)	591, 915
BseLI	CCNNNNNNNGG	2 cut(s)	216, 969
BseMI	GCAATG	3 cut(s)	211, 740, 1020
BseNI	ACTGG	4 cut(s)	423, 475, 631, 1124
BseXI	GCAGC	5 cut(s)	74, 275, 495, 523, 918
BsgI	GTGCAG	2 cut(s)	467, 787
BshFI	GGCC	2 cut(s)	37, 159
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	38, 121, 776
BslFI	GGGAC	2 cut(s)	964, 986
BslI	CCNNNNNNNGG	2 cut(s)	216, 969
BsmAI	GTCTC	2 cut(s)	804, 955
BsmFI	GGGAC	2 cut(s)	964, 986
BsnI	GGCC	2 cut(s)	37, 159
Bso31I	GGTCTC	1 cut(s)	804
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	2 cut(s)	160, 704
BspANI	GGCC	2 cut(s)	37, 159
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	3 cut(s)	26, 513, 1107
BspMI	ACCTGC	1 cut(s)	1110
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	5 cut(s)	88, 192, 424, 671, 911
BspQI	GCTCTTC	2 cut(s)	450, 825
BspTNI	GGTCTC	1 cut(s)	804
BsrDI	GCAATG	3 cut(s)	211, 740, 1020
BsrFI	RCCGGY	2 cut(s)	37, 120
BsrI	ACTGG	4 cut(s)	423, 475, 631, 1124
BssAI	RCCGGY	2 cut(s)	37, 120
BssECI	CCNNGG	4 cut(s)	154, 252, 817, 963
BssMI	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
BssT1I	CCWWGG	4 cut(s)	154, 252, 817, 963
Bst4CI	ACNGT	4 cut(s)	50, 112, 136, 1042
Bst6I	CTCTTC	2 cut(s)	450, 825
BstC8I	GCNNGC	3 cut(s)	224, 241, 516
BstDSI	CCRYGG	1 cut(s)	963
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	1081
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	6 cut(s)	96, 187, 419, 679, 913, 919
BstMAI	GTCTC	2 cut(s)	804, 955
BstMBI	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 159
BstNSI	RCATGY	1 cut(s)	979
BstSFI	CTRYAG	3 cut(s)	22, 509, 1103
BstV1I	GCAGC	5 cut(s)	74, 275, 495, 523, 918
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	2 cut(s)	93, 916
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	2 cut(s)	93, 916
BsuRI	GGCC	2 cut(s)	37, 159
BtgI	CCRYGG	1 cut(s)	963
BtsCI	GGATG	1 cut(s)	1081
BtsI	GCAGTG	2 cut(s)	613, 770
BtsIMutI	CAGTG	6 cut(s)	132, 182, 613, 770, 1038, 1131
BveI	ACCTGC	1 cut(s)	1110
Cac8I	GCNNGC	3 cut(s)	224, 241, 516
CaiI	CAGNNNCTG	1 cut(s)	1130
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	2 cut(s)	37, 120
Csp6I	GTAC	3 cut(s)	46, 630, 1089
CviAII	CATG	4 cut(s)	359, 964, 976, 1086
CviQI	GTAC	3 cut(s)	46, 630, 1089
DpnI	GATC	6 cut(s)	95, 186, 418, 678, 912, 918
DpnII	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
DraIII	CACNNNGTG	1 cut(s)	545
Eam1104I	CTCTTC	2 cut(s)	450, 825
EarI	CTCTTC	2 cut(s)	450, 825
Eco130I	CCWWGG	4 cut(s)	154, 252, 817, 963
Eco31I	GGTCTC	1 cut(s)	804
Eco57I	CTGAAG	3 cut(s)	519, 543, 644
Eco88I	CYCGRG	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoT14I	CCWWGG	4 cut(s)	154, 252, 817, 963
ErhI	CCWWGG	4 cut(s)	154, 252, 817, 963
FaeI	CATG	4 cut(s)	362, 967, 979, 1089
FaqI	GGGAC	2 cut(s)	964, 986
FatI	CATG	4 cut(s)	358, 963, 975, 1085
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	6 cut(s)	63, 160, 264, 509, 512, 932
FokI	GGATG	1 cut(s)	1068
Fsp4HI	GCNGC	6 cut(s)	63, 160, 264, 509, 512, 932
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	6 cut(s)	63, 160, 264, 509, 512, 932
HaeIII	GGCC	2 cut(s)	37, 159
HapII	CCGG	3 cut(s)	38, 121, 776
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	362, 967, 979, 1089
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	7 cut(s)	146, 304, 332, 592, 652, 664, 752
HpaII	CCGG	3 cut(s)	38, 121, 776
HphI	GGTGA	2 cut(s)	464, 920
Hpy166II	GTNNAC	3 cut(s)	46, 428, 656
Hpy188I	TCNGA	5 cut(s)	663, 669, 884, 994, 1074
Hpy188III	TCNNGA	4 cut(s)	596, 845, 914, 1008
Hpy8I	GTNNAC	3 cut(s)	46, 428, 656
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	4 cut(s)	50, 112, 136, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 159
Hsp92II	CATG	4 cut(s)	362, 967, 979, 1089
HspAI	GCGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
LguI	GCTCTTC	2 cut(s)	450, 825
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	5 cut(s)	74, 275, 495, 523, 918
LweI	GCATC	3 cut(s)	49, 76, 133
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	5 cut(s)	212, 329, 545, 842, 1132
MalI	GATC	6 cut(s)	95, 186, 418, 678, 912, 918
MboI	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
MboII	GAAGA	5 cut(s)	467, 478, 546, 549, 842
MflI	RGATCY	2 cut(s)	93, 916
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	4 cut(s)	378, 721, 886, 1003
MlyI	GAGTC	3 cut(s)	298, 326, 661
MnlI	CCTC	7 cut(s)	325, 886, 899, 963, 970, 992, 1068
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	793
MspI	CCGG	3 cut(s)	38, 121, 776
MwoI	GCNNNNNNNGC	2 cut(s)	62, 159
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	4 cut(s)	362, 967, 979, 1089
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	4 cut(s)	212, 329, 545, 842
NspI	RCATGY	1 cut(s)	979
PaeR7I	CTCGAG	1 cut(s)	334
PciI	ACATGT	1 cut(s)	975
PciSI	GCTCTTC	2 cut(s)	450, 825
PfeI	GAWTC	4 cut(s)	146, 592, 664, 752
PkrI	GCNGC	6 cut(s)	64, 161, 265, 510, 513, 933
PleI	GAGTC	3 cut(s)	298, 326, 660
PpsI	GAGTC	3 cut(s)	298, 326, 660
PscI	ACATGT	1 cut(s)	975
PspN4I	GGNNCC	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	334
PstI	CTGCAG	3 cut(s)	26, 513, 1107
PstNI	CAGNNNCTG	1 cut(s)	1130
PsuI	RGATCY	2 cut(s)	93, 916
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	3 cut(s)	47, 631, 1090
RsaNI	GTAC	3 cut(s)	46, 630, 1089
SapI	GCTCTTC	2 cut(s)	450, 825
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	63, 160, 264, 509, 512, 932
Sau3AI	GATC	6 cut(s)	93, 184, 416, 676, 910, 916
SchI	GAGTC	3 cut(s)	298, 326, 661
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	3 cut(s)	49, 76, 133
SfcI	CTRYAG	3 cut(s)	22, 509, 1103
Sfr274I	CTCGAG	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	334, 699
SmoI	CTYRAG	2 cut(s)	334, 699
Sse9I	AATT	4 cut(s)	378, 721, 886, 1003
SsiI	CCGC	2 cut(s)	160, 704
SspMI	CTAG	1 cut(s)	515
StyI	CCWWGG	4 cut(s)	154, 252, 817, 963
TaaI	ACNGT	4 cut(s)	50, 112, 136, 1042
TaqI	TCGA	5 cut(s)	335, 419, 891, 984, 1112
TasI	AATT	4 cut(s)	378, 721, 886, 1003
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	4 cut(s)	146, 592, 664, 752
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	6 cut(s)	139, 182, 620, 770, 1045, 1131
TseFI	GTSAC	4 cut(s)	212, 329, 545, 842
TseI	GCWGC	5 cut(s)	62, 263, 508, 511, 931
Tsp45I	GTSAC	4 cut(s)	212, 329, 545, 842
TspDTI	ATGAA	3 cut(s)	347, 1070, 1074
TspRI	CASTG	6 cut(s)	139, 182, 620, 770, 1045, 1131
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	2 cut(s)	721, 886
XceI	RCATGY	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	334
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.