Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

50045127 .. 50046688

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATTGTCAATCTCAATGTCAACAACGCCCACCATCAGCTGCGATCTGAAAAGATGCAAGACCAGCTTGGGGTTTGTGATGATGATTCAGATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAGATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAGCGGCAATTATCACAATCTAGATACGGCGGCAGCCTCCATGGACGGTCCGAGGGAAAGTTCTTCTATTCCTGTCAATGGATCTTTATGTTCGCCCTGCTCGTCAGTACTCTACAATACTTTAAGCAGTAGTGTCGTTTCACATGGTGTCAAGGGTGAACAAGTCTTTGACGCCAGAGCAAATGCCGTGATGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTATGAAAGGAAAATTCGATATCAAAAGAGGAAAGCCATAGCTGATACACGTAAGCGGGTGAGAGGTCGATTTGCAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

168

Amino Acids

18.99

Weight (kDa)

6.59

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	126 - 168	1.4e-14	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	3 cut(s)	204, 230, 478
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	309, 398
AfiI	CCNNNNNNNGG	4 cut(s)	70, 127, 278, 393
AflIII	ACRYGT	1 cut(s)	470
AluBI	AGCT	4 cut(s)	40, 67, 184, 464
AluI	AGCT	4 cut(s)	40, 67, 184, 464
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	289
AlwNI	CAGNNNCTG	1 cut(s)	184
ApeKI	GCWGC	3 cut(s)	40, 184, 233
ApoI	RAATTY	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	368, 493
AvaII	GGWCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	27, 171, 245
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	2 cut(s)	243, 371
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BclI	TGATCA	2 cut(s)	154, 193
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	113, 221
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	5 cut(s)	41, 185, 205, 231, 234
BlsI	GCNGC	5 cut(s)	42, 186, 206, 232, 235
BmcAI	AGTACT	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	473
BsaBI	GATNNNNATC	2 cut(s)	108, 159
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	240, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 127, 278, 393
Bse8I	GATNNNNATC	2 cut(s)	108, 159
BseDI	CCNNGG	2 cut(s)	240, 251
BseJI	GATNNNNATC	2 cut(s)	108, 159
BseLI	CCNNNNNNNGG	4 cut(s)	70, 127, 278, 393
BseMII	CTCAG	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	27, 171, 245
BslI	CCNNNNNNNGG	4 cut(s)	70, 127, 278, 393
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	2 cut(s)	116, 412
Bsp143I	GATC	5 cut(s)	44, 154, 160, 193, 281
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	3 cut(s)	204, 230, 478
BspCNI	CTCAG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	240, 251
BssMI	GATC	5 cut(s)	44, 154, 160, 193, 281
BssNI	GRCGYC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	240
BstKTI	GATC	5 cut(s)	47, 157, 163, 196, 284
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	5 cut(s)	44, 154, 160, 193, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 409
BstV1I	GCAGC	3 cut(s)	27, 171, 245
BstX2I	RGATCY	2 cut(s)	160, 281
BstYI	RGATCY	2 cut(s)	160, 281
BtgI	CCRYGG	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	248
CpoI	CGGWCCG	1 cut(s)	248
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	308, 397
CspI	CGGWCCG	1 cut(s)	248
CviAII	CATG	2 cut(s)	241, 344
CviJI	RGCY	6 cut(s)	40, 67, 184, 236, 458, 464
CviKI_1	RGCY	6 cut(s)	40, 67, 184, 236, 458, 464
CviQI	GTAC	2 cut(s)	308, 397
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	5 cut(s)	46, 156, 162, 195, 283
DpnII	GATC	5 cut(s)	44, 154, 160, 193, 281
DraIII	CACNNNGTG	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	248
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	244, 347
FaiI	YATR	6 cut(s)	95, 242, 289, 345, 426, 461
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	2 cut(s)	240, 343
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	2 cut(s)	154, 193
Fnu4HI	GCNGC	5 cut(s)	41, 185, 205, 231, 234
Fsp4HI	GCNGC	5 cut(s)	41, 185, 205, 231, 234
FspBI	CTAG	2 cut(s)	113, 221
GluI	GCNGC	5 cut(s)	41, 185, 205, 231, 234
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	244, 347
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	2 cut(s)	368, 493
Hpy166II	GTNNAC	2 cut(s)	22, 359
Hpy188I	TCNGA	5 cut(s)	49, 91, 143, 171, 252
Hpy188III	TCNNGA	3 cut(s)	121, 158, 221
Hpy8I	GTNNAC	2 cut(s)	22, 359
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	2 cut(s)	58, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 409
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	244, 347
Ksp22I	TGATCA	2 cut(s)	154, 193
Kzo9I	GATC	5 cut(s)	44, 154, 160, 193, 281
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	7 cut(s)	77, 111, 134, 191, 285, 310, 388
Lsp1109I	GCAGC	3 cut(s)	27, 171, 245
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	113, 221
MaeII	ACGT	1 cut(s)	472
MalI	GATC	5 cut(s)	46, 156, 162, 195, 283
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	5 cut(s)	44, 154, 160, 193, 281
MboII	GAAGA	4 cut(s)	143, 161, 255, 418
MflI	RGATCY	2 cut(s)	160, 281
MluCI	AATT	3 cut(s)	208, 435, 502
MnlI	CCTC	5 cut(s)	246, 247, 387, 444, 479
MseI	TTAA	2 cut(s)	323, 505
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	40
Mva1269I	GAATGC	2 cut(s)	116, 412
MwoI	GCNNNNNNNGC	2 cut(s)	64, 409
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	44, 154, 160, 193, 281
NlaIII	CATG	2 cut(s)	244, 347
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	2 cut(s)	116, 412
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	42, 186, 206, 232, 235
Ppu21I	YACGTR	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	160, 281
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	2 cut(s)	309, 398
RsaNI	GTAC	2 cut(s)	308, 397
RseI	CAYNNNNRTG	1 cut(s)	417
Rsr2I	CGGWCCG	1 cut(s)	248
RsrII	CGGWCCG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	323, 505
SatI	GCNGC	5 cut(s)	41, 185, 205, 231, 234
Sau3AI	GATC	5 cut(s)	44, 154, 160, 193, 281
Sau96I	GGNCC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	309
SetI	ASST	8 cut(s)	42, 69, 100, 186, 398, 466, 475, 490
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	3 cut(s)	208, 435, 502
SsiI	CCGC	3 cut(s)	204, 230, 478
SspMI	CTAG	2 cut(s)	113, 221
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	439, 490
TasI	AATT	3 cut(s)	208, 435, 502
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	2 cut(s)	207, 233
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	323, 505
Tru9I	TTAA	2 cut(s)	323, 505
TseI	GCWGC	3 cut(s)	40, 184, 233
TspDTI	ATGAA	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	220
XspI	CTAG	2 cut(s)	113, 221
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.