Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

50050069 .. 50051067

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTAGTTCCCGATTACACCCAAAAAGGCAATTCTCCGGTTACACAGGTTGCCCTTCTGCTGGGCAGTTTGCAGCAATGTGGGGTTTCCAGCTGAATGATGACATCACTCTCTCTATAACCAGTAGTTATTGTGTGGAACACTTAAATACTCTTGGCCAAAAGATTCTTCACTTGAAAAGGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATTCAGTACATCAGCTTATATATGGCCAAGAACAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCATACAGAATCAATTTGGCAAAGGACGAGTCCGGTTCAAAGTACTAGTCAGGTTGATTCTCAAAATGTGCAAGATCAGATCCAGGTCTGCAAGAAACTCACTTGTCCTGATGATTCCAATTTATCGAATGCTGAATGTTTGGCAGTCCTAAACTTTGAATTAGGATTACTCGTAGATGATGATGATGTTGATGATGATAATAATCATGATGATGTACCGTTGTCTTATGCCTCCTCCACCATGGACGAATCAAGAGCAGAAGCGTCTATTCACATCAATGGGTCTTCATCTTCGTCAACCTCTTCGTCGGTATTCTGTACAATTCCAGGCAATGTTAGTTCCTGCGGCCTCAAGGGTGAAGAACATTTGGAAGTCAGAGCAAAGGCCATGATTAGGTACAAAGAGAAGAAGCGATCCCGTTCGCATGCAAAAACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

261

Amino Acids

28.79

Weight (kDa)

5.44

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	2 cut(s)	418, 753
AcoI	YGGCCR	2 cut(s)	190, 283
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	5 cut(s)	267, 388, 561, 664, 743
AfiI	CCNNNNNNNGG	2 cut(s)	95, 738
AgsI	TTSAA	4 cut(s)	211, 258, 383, 503
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	426, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	127, 223, 274
AluI	AGCT	3 cut(s)	127, 223, 274
AlwI	GGATC	2 cut(s)	418, 753
AoxI	GGCC	4 cut(s)	190, 283, 691, 729
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	4 cut(s)	358, 376, 390, 408
AsuHPI	GGTGA	2 cut(s)	296, 713
BalI	TGGCCA	2 cut(s)	192, 285
BbsI	GAAGAC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	428, 672
BclI	TGATCA	1 cut(s)	229
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	39, 390
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	2 cut(s)	108, 691
BlsI	GCNGC	2 cut(s)	109, 692
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	428, 672
BmrFI	CCNGG	2 cut(s)	428, 672
BpiI	GAAGAC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	680
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	2 cut(s)	71, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 738
Bse1I	ACTGG	2 cut(s)	156, 240
Bse3DI	GCAATG	2 cut(s)	117, 682
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	428, 672
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	95, 738
BseMI	GCAATG	2 cut(s)	117, 682
BseNI	ACTGG	2 cut(s)	156, 240
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	119
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	4 cut(s)	192, 285, 693, 731
BshVI	ATCGAT	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	72, 377
BslI	CCNNNNNNNGG	2 cut(s)	95, 738
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	4 cut(s)	192, 285, 693, 731
Bsp1407I	TGTACA	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	33, 229, 418, 423, 758
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	4 cut(s)	192, 285, 693, 731
BspDI	ATCGAT	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	550
BspPI	GGATC	2 cut(s)	418, 753
BsrDI	GCAATG	2 cut(s)	117, 682
BsrGI	TGTACA	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	156, 240
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	33, 229, 418, 423, 758
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	428, 672
Bst4CI	ACNGT	2 cut(s)	331, 564
Bst6I	CTCTTC	1 cut(s)	652
BstAUI	TGTACA	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	26, 771
BstDSI	CCRYGG	1 cut(s)	585
BstKTI	GATC	5 cut(s)	36, 232, 421, 426, 761
BstMBI	GATC	5 cut(s)	33, 229, 418, 423, 758
BstNI	CCWGG	2 cut(s)	428, 672
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	426, 670
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	2 cut(s)	33, 423
BstYI	RGATCY	2 cut(s)	33, 423
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	4 cut(s)	192, 285, 693, 731
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	26, 771
CciI	TCATGA	1 cut(s)	550
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	5 cut(s)	266, 387, 560, 663, 742
CviAII	CATG	5 cut(s)	29, 551, 586, 733, 770
CviJI	RGCY	9 cut(s)	24, 127, 192, 217, 223, 274, 285, 693, 731
CviKI_1	RGCY	9 cut(s)	24, 127, 192, 217, 223, 274, 285, 693, 731
CviQI	GTAC	5 cut(s)	266, 387, 560, 663, 742
DpnI	GATC	5 cut(s)	35, 231, 420, 425, 760
DpnII	GATC	5 cut(s)	33, 229, 418, 423, 758
EaeI	YGGCCR	2 cut(s)	190, 283
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	426, 670
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	5 cut(s)	32, 554, 589, 736, 773
FatI	CATG	5 cut(s)	28, 550, 585, 732, 769
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	108, 691
Fsp4HI	GCNGC	2 cut(s)	108, 691
FspBI	CTAG	2 cut(s)	39, 390
GluI	GCNGC	2 cut(s)	108, 691
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	192, 285, 693, 731
HapII	CCGG	2 cut(s)	72, 377
HgaI	GACGC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	32, 554, 589, 736, 773
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	8 cut(s)	199, 254, 298, 353, 373, 401, 458, 593
HpaII	CCGG	2 cut(s)	72, 377
HphI	GGTGA	2 cut(s)	296, 713
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	2 cut(s)	423, 722
Hpy188III	TCNNGA	5 cut(s)	45, 233, 452, 551, 597
Hpy8I	GTNNAC	1 cut(s)	642
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	331, 564
HpyCH4V	TGCA	5 cut(s)	107, 346, 415, 435, 773
Hsp92II	CATG	5 cut(s)	32, 554, 589, 736, 773
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	33, 229, 418, 423, 758
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	39, 390
MaeIII	GTNAC	2 cut(s)	14, 74
MalI	GATC	5 cut(s)	35, 231, 420, 425, 760
MboI	GATC	5 cut(s)	33, 229, 418, 423, 758
MboII	GAAGA	7 cut(s)	194, 303, 621, 627, 639, 716, 763
MflI	RGATCY	2 cut(s)	33, 423
MlsI	TGGCCA	2 cut(s)	192, 285
MluCI	AATT	7 cut(s)	65, 259, 357, 463, 503, 666, 780
MluNI	TGGCCA	2 cut(s)	192, 285
MlyI	GAGTC	2 cut(s)	307, 382
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	586, 589, 655, 704
Mox20I	TGGCCA	2 cut(s)	192, 285
MscI	TGGCCA	2 cut(s)	192, 285
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	3 cut(s)	12, 555, 621
Msp20I	TGGCCA	2 cut(s)	192, 285
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	2 cut(s)	72, 377
MspR9I	CCNGG	2 cut(s)	428, 672
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	428, 672
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	5 cut(s)	33, 229, 418, 423, 758
NlaIII	CATG	5 cut(s)	32, 554, 589, 736, 773
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	773
PaeI	GCATGC	1 cut(s)	773
PagI	TCATGA	1 cut(s)	550
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	6 cut(s)	199, 254, 353, 401, 458, 593
PkrI	GCNGC	2 cut(s)	109, 692
PleI	GAGTC	2 cut(s)	306, 381
PpsI	GAGTC	2 cut(s)	306, 381
Psp6I	CCWGG	2 cut(s)	426, 670
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	426, 670
PsuI	RGATCY	2 cut(s)	33, 423
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	5 cut(s)	267, 388, 561, 664, 743
RsaNI	GTAC	5 cut(s)	266, 387, 560, 663, 742
RseI	CAYNNNNRTG	3 cut(s)	12, 555, 621
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	108, 691
Sau3AI	GATC	5 cut(s)	33, 229, 418, 423, 758
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	2 cut(s)	307, 382
ScrFI	CCNGG	2 cut(s)	428, 672
SetI	ASST	9 cut(s)	85, 129, 225, 276, 309, 399, 432, 647, 743
SmiMI	CAYNNNNRTG	3 cut(s)	12, 555, 621
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SpeI	ACTAGT	1 cut(s)	389
SphI	GCATGC	1 cut(s)	773
Sse9I	AATT	7 cut(s)	65, 259, 357, 463, 503, 666, 780
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	2 cut(s)	39, 390
StyD4I	CCNGG	2 cut(s)	426, 670
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	331, 564
TaqI	TCGA	2 cut(s)	252, 470
TasI	AATT	7 cut(s)	65, 259, 357, 463, 503, 666, 780
TatI	WGTACW	3 cut(s)	265, 386, 662
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	6 cut(s)	199, 254, 353, 401, 458, 593
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	621
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	773
XspI	CTAG	2 cut(s)	39, 390
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.