Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Forward (+)

9708767 .. 9710499

Gene Structure 1733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAAAATTTGCAAGTTCTGCTTGGCATCAAGGCCAGTGGTACACTGTAAAGCCGATGCAGCACATCTTTGCCTTTCCTGCGATGCGAAAATCCACTCAGCTAACGCAATTGTCAACCGGCACCACCGTACAGTCTTATGTGATTCATGCAACTACCTCTCAGCCTTTGTTCAGTGTCTAGATCACAACAATCACCGCATCAGGCTCATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTAGTTCCCGATTACACCCAAAAAGGCAATTCTCAGGTTACACAGGTTGCCCTTCTGCTGAGCAGTTTGCAGCAATGTGGGGTTTCCAGCTGAATGATGAGATCACTCTCTCTATAACCAGTAGTTATTATGTGGAACACTTAAATGCTCTTGGCCACCAGATTCTTCACTTGAAAAGGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATACAGTACATCAGCTTATATATGGCCAAGAAGAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCATGCAGAATCAATTTGGCAGTGGACAAGTCCGGTTCAAAGTACTAGTCAGGTTGATTCTCAAAATGTGCAAGATCAGATCCAGGTCTGCAAGAAACTCGCTTGTCCTGATGATTCCAATTTATCAAATGCTGAATGTTTGGCAGTCCTAAACTTCGAATTAGGATTACTCGTAGATGACGATGATGTTGATGATGATAATAATCATGATGATGTACCGTTGTCTTATGCCTCCTCCACCATGGACGAATCAAGAGCAGATGCATCTATTCACATCAATGGGTCTTCATCTTCGTCGACCTCTTCGTGGGTATTCTGTACAATTCCAAGCAATGTTAGTTCCTGCGGCCTCAAGGGTGAAGAACATTTGGAAGCCAGAGCAAAGGCCATGATTAGGTACAAAGAGAAGAAGCGATCCCGTTCGCATGCAAAAACAATTCGATATCCAAATAGGAAAGCAAGAGCTGATGTACGTAAGCGTGTGAATGGCCGGTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

352

Amino Acids

39.33

Weight (kDa)

6.48

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	311 - 351	3.1e-11	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	2 cut(s)	199, 900
AclWI	GGATC	2 cut(s)	628, 963
AcoI	YGGCCR	3 cut(s)	400, 493, 1042
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	8 cut(s)	45, 133, 477, 598, 771, 874, 953, 1026
AfiI	CCNNNNNNNGG	2 cut(s)	861, 948
AgsI	TTSAA	3 cut(s)	421, 468, 593
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	636
AluBI	AGCT	5 cut(s)	104, 337, 433, 484, 1019
AluI	AGCT	5 cut(s)	104, 337, 433, 484, 1019
AlwI	GGATC	2 cut(s)	628, 963
AoxI	GGCC	6 cut(s)	35, 400, 493, 901, 939, 1042
ApeKI	GCWGC	2 cut(s)	62, 317
ApoI	RAATTY	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AsuHPI	GGTGA	3 cut(s)	188, 506, 923
AsuII	TTCGAA	1 cut(s)	711
BalI	TGGCCA	2 cut(s)	402, 495
BanI	GGYRCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	831
BbvI	GCAGC	2 cut(s)	74, 329
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BciT130I	CCWGG	1 cut(s)	638
BclI	TGATCA	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	3 cut(s)	182, 249, 600
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	3 cut(s)	63, 318, 901
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	64, 319, 902
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	6 cut(s)	38, 49, 76, 210, 805, 827
BpiI	GAAGAC	1 cut(s)	831
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	890
Bsa29I	ATCGAT	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	1028
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	1 cut(s)	795
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	2 cut(s)	861, 948
Bse118I	RCCGGY	2 cut(s)	120, 1044
Bse1I	ACTGG	3 cut(s)	38, 366, 450
Bse3DI	GCAATG	2 cut(s)	327, 892
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	638
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	795
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	861, 948
BseMI	GCAATG	2 cut(s)	327, 892
BseMII	CTCAG	4 cut(s)	114, 177, 294, 297
BseNI	ACTGG	3 cut(s)	38, 366, 450
BseRI	GAGGAG	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	74, 329
BshFI	GGCC	6 cut(s)	37, 402, 495, 903, 941, 1044
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	462
BsiSI	CCGG	3 cut(s)	121, 587, 1045
BslI	CCNNNNNNNGG	2 cut(s)	861, 948
BsnI	GGCC	6 cut(s)	37, 402, 495, 903, 941, 1044
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1407I	TGTACA	1 cut(s)	872
Bsp143I	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	795
BspACI	CCGC	2 cut(s)	199, 900
BspANI	GGCC	6 cut(s)	37, 402, 495, 903, 941, 1044
BspCNI	CTCAG	4 cut(s)	113, 176, 293, 298
BspDI	ATCGAT	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	628, 963
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	327, 892
BsrFI	RCCGGY	2 cut(s)	120, 1044
BsrGI	TGTACA	1 cut(s)	872
BsrI	ACTGG	3 cut(s)	38, 366, 450
BssAI	RCCGGY	2 cut(s)	120, 1044
BssECI	CCNNGG	1 cut(s)	795
BssMI	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
BssT1I	CCWWGG	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	6 cut(s)	50, 131, 136, 475, 541, 774
Bst6I	CTCTTC	1 cut(s)	862
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	872
BstBAI	YACGTR	1 cut(s)	1028
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	236, 558, 981
BstDEI	CTNAG	4 cut(s)	100, 163, 280, 306
BstDSI	CCRYGG	1 cut(s)	795
BstKTI	GATC	7 cut(s)	187, 246, 351, 442, 631, 636, 971
BstMBI	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	2 cut(s)	560, 983
BstSCI	CCNGG	1 cut(s)	636
BstSNI	TACGTA	1 cut(s)	1028
BstV1I	GCAGC	2 cut(s)	74, 329
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	2 cut(s)	243, 633
BstYI	RGATCY	2 cut(s)	243, 633
Bsu15I	ATCGAT	1 cut(s)	462
BsuRI	GGCC	6 cut(s)	37, 402, 495, 903, 941, 1044
BsuTUI	ATCGAT	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	795
BtgZI	GCGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	5 cut(s)	45, 46, 182, 435, 581
Cac8I	GCNNGC	3 cut(s)	236, 558, 981
CciI	TCATGA	1 cut(s)	760
Cfr10I	RCCGGY	2 cut(s)	120, 1044
ClaI	ATCGAT	1 cut(s)	462
Csp6I	GTAC	8 cut(s)	44, 132, 476, 597, 770, 873, 952, 1025
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	8 cut(s)	150, 211, 239, 557, 761, 796, 943, 980
CviQI	GTAC	8 cut(s)	44, 132, 476, 597, 770, 873, 952, 1025
DdeI	CTNAG	4 cut(s)	100, 163, 280, 306
DpnI	GATC	7 cut(s)	186, 245, 350, 441, 630, 635, 970
DpnII	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
EaeI	YGGCCR	3 cut(s)	400, 493, 1042
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco105I	TACGTA	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	998
Eco57I	CTGAAG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	998
EcoT14I	CCWWGG	1 cut(s)	795
EcoT22I	ATGCAT	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	8 cut(s)	153, 214, 242, 560, 764, 799, 946, 983
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	8 cut(s)	149, 210, 238, 556, 760, 795, 942, 979
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	3 cut(s)	63, 318, 901
Fsp4HI	GCNGC	3 cut(s)	63, 318, 901
FspBI	CTAG	3 cut(s)	182, 249, 600
GluI	GCNGC	3 cut(s)	63, 318, 901
HaeIII	GGCC	6 cut(s)	37, 402, 495, 903, 941, 1044
HapII	CCGG	3 cut(s)	121, 587, 1045
Hin1II	CATG	8 cut(s)	153, 214, 242, 560, 764, 799, 946, 983
HincII	GTYRAC	2 cut(s)	118, 852
HindII	GTYRAC	2 cut(s)	118, 852
HinfI	GANTC	8 cut(s)	146, 409, 464, 508, 563, 611, 668, 803
HpaII	CCGG	3 cut(s)	121, 587, 1045
HphI	GGTGA	3 cut(s)	188, 506, 923
Hpy166II	GTNNAC	4 cut(s)	46, 118, 579, 852
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	6 cut(s)	182, 255, 443, 662, 761, 807
Hpy8I	GTNNAC	4 cut(s)	46, 118, 579, 852
Hpy99I	CGWCG	1 cut(s)	853
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	6 cut(s)	50, 131, 136, 475, 541, 774
HpyCH4IV	ACGT	1 cut(s)	1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
HpyF3I	CTNAG	4 cut(s)	100, 163, 280, 306
HpySE526I	ACGT	1 cut(s)	1027
Hsp92II	CATG	8 cut(s)	153, 214, 242, 560, 764, 799, 946, 983
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
Lsp1109I	GCAGC	2 cut(s)	74, 329
LweI	GCATC	6 cut(s)	38, 49, 76, 210, 805, 827
MaeI	CTAG	3 cut(s)	182, 249, 600
MaeII	ACGT	1 cut(s)	1027
MaeIII	GTNAC	2 cut(s)	224, 284
MalI	GATC	7 cut(s)	186, 245, 350, 441, 630, 635, 970
MboI	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
MboII	GAAGA	8 cut(s)	404, 512, 513, 831, 837, 849, 926, 973
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	2 cut(s)	243, 633
MlsI	TGGCCA	2 cut(s)	402, 495
MluCI	AATT	8 cut(s)	9, 111, 275, 567, 673, 713, 876, 990
MluNI	TGGCCA	2 cut(s)	402, 495
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	5 cut(s)	170, 796, 799, 865, 914
Mox20I	TGGCCA	2 cut(s)	402, 495
Mph1103I	ATGCAT	1 cut(s)	820
MscI	TGGCCA	2 cut(s)	402, 495
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	4 cut(s)	222, 390, 765, 831
Msp20I	TGGCCA	2 cut(s)	402, 495
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	3 cut(s)	121, 587, 1045
MspR9I	CCNGG	1 cut(s)	638
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
NcoI	CCATGG	1 cut(s)	795
NdeII	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
NlaIII	CATG	8 cut(s)	153, 214, 242, 560, 764, 799, 946, 983
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	2 cut(s)	560, 983
NspV	TTCGAA	1 cut(s)	711
PaeI	GCATGC	2 cut(s)	560, 983
PagI	TCATGA	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	2 cut(s)	732, 857
PfeI	GAWTC	7 cut(s)	146, 409, 464, 563, 611, 668, 803
PkrI	GCNGC	3 cut(s)	64, 319, 902
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
Ppu21I	YACGTR	1 cut(s)	1028
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	243, 633
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	8 cut(s)	45, 133, 477, 598, 771, 874, 953, 1026
RsaNI	GTAC	8 cut(s)	44, 132, 476, 597, 770, 873, 952, 1025
RseI	CAYNNNNRTG	4 cut(s)	222, 390, 765, 831
SalI	GTCGAC	1 cut(s)	850
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	3 cut(s)	63, 318, 901
Sau3AI	GATC	7 cut(s)	184, 243, 348, 439, 628, 633, 968
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	638
SfaNI	GCATC	6 cut(s)	38, 49, 76, 210, 805, 827
SfuI	TTCGAA	1 cut(s)	711
SmiMI	CAYNNNNRTG	4 cut(s)	222, 390, 765, 831
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
SnaBI	TACGTA	1 cut(s)	1028
SpeI	ACTAGT	1 cut(s)	599
SphI	GCATGC	2 cut(s)	560, 983
Sse9I	AATT	8 cut(s)	9, 111, 275, 567, 673, 713, 876, 990
SsiI	CCGC	2 cut(s)	199, 900
SspMI	CTAG	3 cut(s)	182, 249, 600
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	6 cut(s)	50, 131, 136, 475, 541, 774
TaiI	ACGT	1 cut(s)	1030
TaqI	TCGA	4 cut(s)	462, 711, 851, 994
TasI	AATT	8 cut(s)	9, 111, 275, 567, 673, 713, 876, 990
TatI	WGTACW	3 cut(s)	475, 596, 872
TauI	GCSGC	1 cut(s)	903
TfiI	GAWTC	7 cut(s)	146, 409, 464, 563, 611, 668, 803
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	5 cut(s)	45, 53, 182, 442, 581
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	62, 317
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	138, 831
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	5 cut(s)	45, 53, 182, 442, 581
XapI	RAATTY	1 cut(s)	9
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	2 cut(s)	560, 983
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	3 cut(s)	182, 249, 600
ZrmI	AGTACT	1 cut(s)	598
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.