Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

55614486 .. 55615742

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGAAAATTTGCGAGTTCTGCTTGGCATCAAGGCCAGTGGTACACTGTAAAGCCGATGCAGCATATCTTTGCCTTTCCTGCGATGCCAAAATCCACTCAGCTAACGCAATTGTAAACCGGCACCATCGTACAGTCTTATGTGATTCATGCAACTACCTCTCAGCCTATGTTCAGTGTCTAGATCACAACGATCACCGCATCAGGCTCATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTAGTTCCCGATCACACCCAAAAAGGCAATTCTCCGGTTACACAGGTTGCCCTTCTGCTGAGCAGTTTGCAGCAATGTGGGGTTTCCAGCTGAATGATGACATCACTCTCTCTATAACCAGTAGATATTGTGTGGAACATTTAAATACTCTTGGCCACCAGATTCTTCACTTGAAAAGGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATTCAGTACATCAGCTTATATATGGCCAAGAACAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCATACAGAATCAATTTGGCAGTGGACGAGTCCGGTTCAAAGTACTAGTCAGGTTGATTCTCAAAATGTGCAAGATCAGATCCAGGTCTGCAAGAAATTCACTTGTCCTGATGATTCCAATTTATCGAATGCTGAATGTTTGGCAGTCCTAAACTTTGAATTAGGATTACTCGTAGATGCTGATGATAATAATCATGATGATGTACCGTTGTCTTATGCCTCCTCCACCATGGACCAATCAAGAGCAGAAGCCTCTATTCACATCAATGGGTCTTCATCTTCGTCGACCTCTTCGTCCGTATTCTGTACAATTCCAGGCAATGTTAGTTCCTGCGGCCTCAAGGGTGAAGAACAATTGGAAGCCAGAGCAAAGGCCATGATTAGGTACAAAGAGAAGAAGCGATCCCGTTCGCATGCAAAAACAATTCGATATCCAAATAGGAAAGCAAGAGCTGCTGTACGTAAGCGTGTGAATGGCCGGTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

347

Amino Acids

38.79

Weight (kDa)

7.26

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	307 - 347	2.4e-10	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	847
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	839
AciI	CCGC	2 cut(s)	199, 888
AclWI	GGATC	2 cut(s)	628, 951
AcoI	YGGCCR	3 cut(s)	400, 493, 1030
AcsI	RAATTY	3 cut(s)	9, 469, 650
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	8 cut(s)	45, 133, 477, 598, 759, 862, 941, 1014
AfiI	CCNNNNNNNGG	1 cut(s)	936
AgsI	TTSAA	4 cut(s)	421, 468, 593, 713
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	2 cut(s)	636, 868
AluBI	AGCT	5 cut(s)	104, 337, 433, 484, 1007
AluI	AGCT	5 cut(s)	104, 337, 433, 484, 1007
AlwI	GGATC	2 cut(s)	628, 951
AoxI	GGCC	6 cut(s)	35, 400, 493, 889, 927, 1030
ApeKI	GCWGC	3 cut(s)	62, 317, 1007
ApoI	RAATTY	3 cut(s)	9, 469, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	3 cut(s)	188, 506, 911
AvaII	GGWCC	1 cut(s)	787
BalI	TGGCCA	2 cut(s)	402, 495
BanI	GGYRCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	819
BbvI	GCAGC	3 cut(s)	74, 329, 994
BccI	CCATC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	638, 870
BclI	TGATCA	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	3 cut(s)	182, 249, 600
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	4 cut(s)	63, 318, 889, 1008
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	4 cut(s)	64, 319, 890, 1009
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	2 cut(s)	638, 870
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	638, 870
BmsI	GCATC	5 cut(s)	38, 49, 76, 210, 721
BpiI	GAAGAC	1 cut(s)	819
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	878
Bsa29I	ATCGAT	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	1016
BsaBI	GATNNNNATC	1 cut(s)	744
BsaJI	CCNNGG	1 cut(s)	783
BsaWI	WCCGGW	2 cut(s)	281, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
Bse118I	RCCGGY	2 cut(s)	120, 1032
Bse1I	ACTGG	3 cut(s)	38, 366, 450
Bse3DI	GCAATG	2 cut(s)	327, 880
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	2 cut(s)	638, 870
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	783
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMI	GCAATG	2 cut(s)	327, 880
BseMII	CTCAG	3 cut(s)	114, 177, 297
BseNI	ACTGG	3 cut(s)	38, 366, 450
BseRI	GAGGAG	1 cut(s)	766
BseXI	GCAGC	3 cut(s)	74, 329, 994
BshFI	GGCC	6 cut(s)	37, 402, 495, 891, 929, 1032
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	462
BsiSI	CCGG	4 cut(s)	121, 282, 587, 1033
BslI	CCNNNNNNNGG	1 cut(s)	936
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	6 cut(s)	37, 402, 495, 891, 929, 1032
Bsp1407I	TGTACA	1 cut(s)	860
Bsp143I	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	2 cut(s)	199, 888
BspANI	GGCC	6 cut(s)	37, 402, 495, 891, 929, 1032
BspCNI	CTCAG	3 cut(s)	113, 176, 298
BspDI	ATCGAT	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	628, 951
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	327, 880
BsrFI	RCCGGY	2 cut(s)	120, 1032
BsrGI	TGTACA	1 cut(s)	860
BsrI	ACTGG	3 cut(s)	38, 366, 450
BssAI	RCCGGY	2 cut(s)	120, 1032
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	638, 870
Bst4CI	ACNGT	4 cut(s)	50, 136, 541, 762
Bst6I	CTCTTC	1 cut(s)	850
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstAUI	TGTACA	1 cut(s)	860
BstBAI	YACGTR	1 cut(s)	1016
BstC8I	GCNNGC	2 cut(s)	236, 969
BstDEI	CTNAG	3 cut(s)	100, 163, 306
BstDSI	CCRYGG	1 cut(s)	783
BstKTI	GATC	8 cut(s)	187, 196, 246, 260, 442, 631, 636, 959
BstMBI	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 62, 81, 1007
BstNI	CCWGG	2 cut(s)	638, 870
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	636, 868
BstSNI	TACGTA	1 cut(s)	1016
BstV1I	GCAGC	3 cut(s)	74, 329, 994
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	243, 633
BstYI	RGATCY	2 cut(s)	243, 633
Bsu15I	ATCGAT	1 cut(s)	462
BsuRI	GGCC	6 cut(s)	37, 402, 495, 891, 929, 1032
BsuTUI	ATCGAT	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	5 cut(s)	45, 46, 182, 435, 581
Cac8I	GCNNGC	2 cut(s)	236, 969
CciI	TCATGA	1 cut(s)	748
Cfr10I	RCCGGY	2 cut(s)	120, 1032
Cfr13I	GGNCC	1 cut(s)	787
ClaI	ATCGAT	1 cut(s)	462
Csp6I	GTAC	8 cut(s)	44, 132, 476, 597, 758, 861, 940, 1013
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	7 cut(s)	150, 211, 239, 749, 784, 931, 968
CviQI	GTAC	8 cut(s)	44, 132, 476, 597, 758, 861, 940, 1013
DdeI	CTNAG	3 cut(s)	100, 163, 306
DpnI	GATC	8 cut(s)	186, 195, 245, 259, 441, 630, 635, 958
DpnII	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
DraI	TTTAAA	1 cut(s)	390
DrdI	GACNNNNNNGTC	1 cut(s)	847
DseDI	GACNNNNNNGTC	1 cut(s)	847
EaeI	YGGCCR	3 cut(s)	400, 493, 1030
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
Eco105I	TACGTA	1 cut(s)	1016
Eco130I	CCWWGG	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	986
Eco47I	GGWCC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	636, 868
EcoRV	GATATC	1 cut(s)	986
EcoT14I	CCWWGG	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	7 cut(s)	153, 214, 242, 752, 787, 934, 971
FatI	CATG	7 cut(s)	149, 210, 238, 748, 783, 930, 967
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	4 cut(s)	63, 318, 889, 1008
Fsp4HI	GCNGC	4 cut(s)	63, 318, 889, 1008
FspBI	CTAG	3 cut(s)	182, 249, 600
GluI	GCNGC	4 cut(s)	63, 318, 889, 1008
HaeIII	GGCC	6 cut(s)	37, 402, 495, 891, 929, 1032
HapII	CCGG	4 cut(s)	121, 282, 587, 1033
Hin1II	CATG	7 cut(s)	153, 214, 242, 752, 787, 934, 971
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HinfI	GANTC	8 cut(s)	146, 409, 464, 508, 563, 583, 611, 668
HpaII	CCGG	4 cut(s)	121, 282, 587, 1033
HphI	GGTGA	3 cut(s)	188, 506, 911
Hpy166II	GTNNAC	4 cut(s)	46, 118, 579, 840
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	6 cut(s)	182, 255, 443, 662, 749, 795
Hpy8I	GTNNAC	4 cut(s)	46, 118, 579, 840
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	4 cut(s)	50, 136, 541, 762
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	7 cut(s)	62, 153, 317, 556, 625, 645, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 62, 81, 1007
HpyF3I	CTNAG	3 cut(s)	100, 163, 306
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	7 cut(s)	153, 214, 242, 752, 787, 934, 971
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
Lsp1109I	GCAGC	3 cut(s)	74, 329, 994
LweI	GCATC	5 cut(s)	38, 49, 76, 210, 721
MaeI	CTAG	3 cut(s)	182, 249, 600
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	2 cut(s)	224, 284
MalI	GATC	8 cut(s)	186, 195, 245, 259, 441, 630, 635, 958
MboI	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
MboII	GAAGA	7 cut(s)	404, 513, 819, 825, 837, 914, 961
MfeI	CAATTG	2 cut(s)	111, 908
MflI	RGATCY	2 cut(s)	243, 633
MlsI	TGGCCA	2 cut(s)	402, 495
MluNI	TGGCCA	2 cut(s)	402, 495
MlyI	GAGTC	2 cut(s)	517, 592
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	6 cut(s)	170, 784, 787, 817, 853, 902
Mox20I	TGGCCA	2 cut(s)	402, 495
MscI	TGGCCA	2 cut(s)	402, 495
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	3 cut(s)	222, 753, 819
Msp20I	TGGCCA	2 cut(s)	402, 495
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	4 cut(s)	121, 282, 587, 1033
MspR9I	CCNGG	2 cut(s)	638, 870
MunI	CAATTG	2 cut(s)	111, 908
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	638, 870
MwoI	GCNNNNNNNGC	4 cut(s)	21, 62, 81, 1007
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
NlaIII	CATG	7 cut(s)	153, 214, 242, 752, 787, 934, 971
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	971
PaeI	GCATGC	1 cut(s)	971
PagI	TCATGA	1 cut(s)	748
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	6 cut(s)	146, 409, 464, 563, 611, 668
PkrI	GCNGC	4 cut(s)	64, 319, 890, 1009
PleI	GAGTC	2 cut(s)	516, 591
PpsI	GAGTC	2 cut(s)	516, 591
Ppu21I	YACGTR	1 cut(s)	1016
Psp6I	CCWGG	2 cut(s)	636, 868
PspGI	CCWGG	2 cut(s)	636, 868
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	787
PsuI	RGATCY	2 cut(s)	243, 633
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	8 cut(s)	45, 133, 477, 598, 759, 862, 941, 1014
RsaNI	GTAC	8 cut(s)	44, 132, 476, 597, 758, 861, 940, 1013
RseI	CAYNNNNRTG	3 cut(s)	222, 753, 819
SalI	GTCGAC	1 cut(s)	838
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	4 cut(s)	63, 318, 889, 1008
Sau3AI	GATC	8 cut(s)	184, 193, 243, 257, 439, 628, 633, 956
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	2 cut(s)	517, 592
ScrFI	CCNGG	2 cut(s)	638, 870
SfaNI	GCATC	5 cut(s)	38, 49, 76, 210, 721
SinI	GGWCC	1 cut(s)	787
SmiI	ATTTAAAT	1 cut(s)	390
SmiMI	CAYNNNNRTG	3 cut(s)	222, 753, 819
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SnaBI	TACGTA	1 cut(s)	1016
SpeI	ACTAGT	1 cut(s)	599
SphI	GCATGC	1 cut(s)	971
SsiI	CCGC	2 cut(s)	199, 888
SspMI	CTAG	3 cut(s)	182, 249, 600
StyD4I	CCNGG	2 cut(s)	636, 868
StyI	CCWWGG	1 cut(s)	783
SwaI	ATTTAAAT	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	50, 136, 541, 762
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	4 cut(s)	462, 680, 839, 982
TatI	WGTACW	3 cut(s)	475, 596, 860
TauI	GCSGC	1 cut(s)	891
TfiI	GAWTC	6 cut(s)	146, 409, 464, 563, 611, 668
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	5 cut(s)	45, 53, 182, 442, 581
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	3 cut(s)	62, 317, 1007
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	138, 819
TspGWI	ACGGA	2 cut(s)	540, 841
TspRI	CASTG	5 cut(s)	45, 53, 182, 442, 581
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	3 cut(s)	9, 469, 650
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	1 cut(s)	839
XspI	CTAG	3 cut(s)	182, 249, 600
ZrmI	AGTACT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.