Rroxscaffold_5G00375580

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
56365851 .. 56368946
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375580.1

Sequence Viewer

Length: 1368 bp
ATGGAGAAATGTTGTGAGTTCTGCAGAGCATTAAGGCCGGTAGTGTACTGTAAAGCTGATGCAGCACATCTTTGCCTATCTTGTGATGCAAAGATCCATTCGGCTAACACAGTTTTCAACCGGCATCAGCGCACTGTCTTATGCGAATCCTGCCAAGCCCGCCCTGCTTATGTTCAGTGTTTGGATCACAGAATGTTTATGTGCAATGCCTGTGACAGGAGCCAGCACACGTCATCTTCCCAACATCATCACAAACGCACTATCCGGAGTTACACAGATTGCCCGTCTGCCAAGGATTTTGCAGCATTGTGGGGTTTCCAATCAAATGAGATAGATAACAAGACTCTATCCACCTCTTGTGGTTCTTGTGACTCGAGTGTGGTAAGCTATGATATTCATGGGCAGTCTTGCTCACAAATTGAATGTCTTTCAGGTGGTGATCGGTTTGAAATGGGATCGACCAGTAAACAATACGAGATATATTGTAAAGGTGAAGAGCATAAGAAGACTGGTTTTATTCTGCACCAGATACTTGACTTGGAAAGGCTGCAGCTAGCCAAAGGGAATAGCCCTTCAGAACAGAGTGACCTATATTCTTCAGCACATCATACTTGGAACAGCTTTGATGAGAATCTTGATTGGCATTTACAGCATTGCGAGACTACTGGTACTAACTTTCAGCTAAATGAGAGTCCACTTCAGAATCCGAAAGATGATCCTTTGCCATTTCTATTTTCTCAAGCAGAACATTTACCATCAAATTCAACTATTGGACTTCCATTGCAGACAGAATCCATTTGGCAGTGCAGAAGTCCGGTTCAAAGTAGTCAGCTGTGGTCTCAAAATATGCAAGACCTTGGGGTTTGTGAAGAGCTTGTTTGTCACGACGATTTCAACATACCTGATGTTGATTTGACATTCCGAAATTTCGAGGAACTCTTTGGAGGTGATCAAGATCCTACCAGATTGCTGTTTGATGTTAAAGATGTCTCATATTCCTCCATGGAGAGGGACATGTCCCTCGATAAATCAGATGACTGCAATTCAAGAGCAATGGTGGATGTATCAGAGGCTTCATCCATGTACCTTACTCAGCCTGCAGACTTCGACAAAGATACCAGTGCCTGTAACAAAGTTGTAGACGTTTCGGGAAGCATGGATTCGAATTCTCCACATACTATTCGACCACCTTTTTCAACTTTACCATTCTCTGAGTCGAGGATATTCACCGTTAGCAACAATGCAGATTGTCATGATACGCAACCCTTGAGCACTTCACCTGATGTGGATGCTGGACAGCTGGAAGTCAGAGCAAGTTCTCGGATGAGGTACAAAGAGAAGAAGCATTCTCGACTGTCGACTAACTGA

Protein Analysis

455

Amino Acids

51.3

Weight (kDa)

5.23

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1140, 1358
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 1 cut(s) 160
AclWI GGATC 5 cut(s) 88, 192, 463, 710, 950
AcsI RAATTY 3 cut(s) 760, 925, 1165
AcuI CTGAAG 3 cut(s) 558, 582, 683
AfaI GTAC 4 cut(s) 47, 670, 1085, 1331
AfiI CCNNNNNNNGG 2 cut(s) 216, 1008
AflIII ACRYGT 2 cut(s) 228, 1014
AgsI TTSAA 8 cut(s) 118, 422, 449, 765, 821, 895, 1047, 1197
AjiI CACGTC 1 cut(s) 231
AluBI AGCT 8 cut(s) 56, 387, 553, 621, 682, 832, 874, 1300
AluI AGCT 8 cut(s) 56, 387, 553, 621, 682, 832, 874, 1300
Alw21I GWGCWC 1 cut(s) 1274
Alw26I GTCTC 3 cut(s) 653, 843, 994
AlwI GGATC 5 cut(s) 88, 192, 463, 710, 950
AlwNI CAGNNNCTG 1 cut(s) 1125
Ama87I CYCGRG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 4 cut(s) 62, 302, 547, 550
ApoI RAATTY 3 cut(s) 760, 925, 1165
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspLEI GCGC 1 cut(s) 132
AsuHPI GGTGA 5 cut(s) 449, 503, 959, 1219, 1269
AsuII TTCGAA 1 cut(s) 1163
AsuNHI GCTAGC 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 1274
BbvI GCAGC 4 cut(s) 74, 314, 534, 562
BccI CCATC 1 cut(s) 763
BclI TGATCA 1 cut(s) 949
BcoDI GTCTC 3 cut(s) 653, 843, 994
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 3 cut(s) 22, 548, 1098
BisI GCNGC 4 cut(s) 63, 303, 548, 551
BlsI GCNGC 4 cut(s) 64, 304, 549, 552
BmeT110I CYCGRG 1 cut(s) 373
BmgBI CACGTC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 221
BmsI GCATC 4 cut(s) 49, 76, 133, 1279
BmtI GCTAGC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 512
Bpu14I TTCGAA 1 cut(s) 1163
BpuEI CTTGAG 2 cut(s) 723, 1288
BsaBI GATNNNNATC 2 cut(s) 630, 954
BsaI GGTCTC 1 cut(s) 843
BsaJI CCNNGG 3 cut(s) 291, 856, 1002
BsaWI WCCGGW 2 cut(s) 264, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 1008
Bse118I RCCGGY 2 cut(s) 37, 120
Bse1I ACTGG 4 cut(s) 462, 514, 670, 1119
Bse3DI GCAATG 4 cut(s) 211, 652, 779, 1059
Bse8I GATNNNNATC 2 cut(s) 630, 954
BseAI TCCGGA 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 291, 856, 1002
BseGI GGATG 4 cut(s) 1066, 1076, 1294, 1329
BseJI GATNNNNATC 2 cut(s) 630, 954
BseLI CCNNNNNNNGG 2 cut(s) 216, 1008
BseMI GCAATG 4 cut(s) 211, 652, 779, 1059
BseMII CTCAG 2 cut(s) 1106, 1203
BseNI ACTGG 4 cut(s) 462, 514, 670, 1119
BseXI GCAGC 4 cut(s) 74, 314, 534, 562
BsgI GTGCAG 2 cut(s) 506, 826
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 1274
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 4 cut(s) 38, 121, 265, 815
BslFI GGGAC 2 cut(s) 1003, 1025
BslI CCNNNNNNNGG 2 cut(s) 216, 1008
BsmAI GTCTC 3 cut(s) 653, 843, 994
BsmFI GGGAC 2 cut(s) 1003, 1025
BsmI GAATGC 1 cut(s) 1345
BsnI GGCC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 843
BsoBI CYCGRG 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 1163
Bsp1286I GDGCHC 1 cut(s) 1274
Bsp13I TCCGGA 1 cut(s) 264
Bsp143I GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
Bsp19I CCATGG 1 cut(s) 1002
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 1105, 1204
BspEI TCCGGA 1 cut(s) 264
BspHI TCATGA 1 cut(s) 1252
BspLI GGNNCC 1 cut(s) 221
BspMAI CTGCAG 3 cut(s) 26, 552, 1102
BspOI GCTAGC 1 cut(s) 557
BspPI GGATC 5 cut(s) 88, 192, 463, 710, 950
BspQI GCTCTTC 2 cut(s) 489, 864
BspT104I TTCGAA 1 cut(s) 1163
BspTNI GGTCTC 1 cut(s) 843
BsrDI GCAATG 4 cut(s) 211, 652, 779, 1059
BsrFI RCCGGY 2 cut(s) 37, 120
BsrI ACTGG 4 cut(s) 462, 514, 670, 1119
BssAI RCCGGY 2 cut(s) 37, 120
BssECI CCNNGG 3 cut(s) 291, 856, 1002
BssMI GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
BssT1I CCWWGG 3 cut(s) 291, 856, 1002
Bst4CI ACNGT 5 cut(s) 50, 112, 136, 1231, 1356
Bst6I CTCTTC 2 cut(s) 489, 864
BstBI TTCGAA 1 cut(s) 1163
BstC8I GCNNGC 4 cut(s) 160, 224, 555, 1098
BstDEI CTNAG 2 cut(s) 1092, 1212
BstDSI CCRYGG 1 cut(s) 1002
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 4 cut(s) 1066, 1076, 1294, 1329
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 7 cut(s) 96, 187, 442, 458, 718, 952, 958
BstMAI GTCTC 3 cut(s) 653, 843, 994
BstMBI GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
BstMWI GCNNNNNNNGC 5 cut(s) 62, 150, 159, 164, 649
BstNSI RCATGY 1 cut(s) 1018
BstSFI CTRYAG 3 cut(s) 22, 548, 1098
BstV1I GCAGC 4 cut(s) 74, 314, 534, 562
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 2 cut(s) 93, 955
BstYI RGATCY 2 cut(s) 93, 955
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 1002
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 4 cut(s) 1066, 1076, 1294, 1329
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 4 cut(s) 132, 182, 809, 1126
Cac8I GCNNGC 4 cut(s) 160, 224, 555, 1098
CaiI CAGNNNCTG 1 cut(s) 1125
CciI TCATGA 1 cut(s) 1252
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 2 cut(s) 37, 120
Csp6I GTAC 4 cut(s) 46, 669, 1084, 1330
CviAII CATG 6 cut(s) 398, 1003, 1015, 1081, 1156, 1253
CviQI GTAC 4 cut(s) 46, 669, 1084, 1330
DdeI CTNAG 2 cut(s) 1092, 1212
DpnI GATC 7 cut(s) 95, 186, 441, 457, 717, 951, 957
DpnII GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
Eam1104I CTCTTC 2 cut(s) 489, 864
EarI CTCTTC 2 cut(s) 489, 864
Eco130I CCWWGG 3 cut(s) 291, 856, 1002
Eco31I GGTCTC 1 cut(s) 843
Eco57I CTGAAG 3 cut(s) 558, 582, 683
Eco88I CYCGRG 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 1165
EcoT14I CCWWGG 3 cut(s) 291, 856, 1002
ErhI CCWWGG 3 cut(s) 291, 856, 1002
FaeI CATG 6 cut(s) 401, 1006, 1018, 1084, 1159, 1256
FaqI GGGAC 2 cut(s) 1003, 1025
FatI CATG 6 cut(s) 397, 1002, 1014, 1080, 1155, 1252
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 949
FblI GTMKAC 2 cut(s) 1140, 1358
Fnu4HI GCNGC 4 cut(s) 63, 303, 548, 551
FokI GGATG 4 cut(s) 1063, 1073, 1301, 1336
Fsp4HI GCNGC 4 cut(s) 63, 303, 548, 551
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 131
GluI GCNGC 4 cut(s) 63, 303, 548, 551
HaeIII GGCC 1 cut(s) 37
HapII CCGG 4 cut(s) 38, 121, 265, 815
HhaI GCGC 1 cut(s) 132
Hin1II CATG 6 cut(s) 401, 1006, 1018, 1084, 1159, 1256
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 1359
HindII GTYRAC 1 cut(s) 1359
HinfI GANTC 9 cut(s) 146, 343, 371, 631, 691, 703, 791, 1160, 1214
HpaII CCGG 4 cut(s) 38, 121, 265, 815
HphI GGTGA 5 cut(s) 449, 503, 959, 1219, 1269
Hpy166II GTNNAC 5 cut(s) 46, 467, 695, 1141, 1359
Hpy188I TCNGA 9 cut(s) 577, 702, 708, 923, 1033, 1069, 1213, 1310, 1323
Hpy188III TCNNGA 8 cut(s) 265, 635, 884, 953, 1047, 1149, 1253, 1350
Hpy8I GTNNAC 5 cut(s) 46, 467, 695, 1141, 1359
Hpy99I CGWCG 1 cut(s) 890
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 5 cut(s) 50, 112, 136, 1231, 1356
HpyCH4IV ACGT 2 cut(s) 230, 1143
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 150, 159, 164, 649
HpyF3I CTNAG 2 cut(s) 1092, 1212
HpySE526I ACGT 2 cut(s) 230, 1143
Hsp92II CATG 6 cut(s) 401, 1006, 1018, 1084, 1159, 1256
HspAI GCGC 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
LguI GCTCTTC 2 cut(s) 489, 864
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 4 cut(s) 74, 314, 534, 562
LweI GCATC 4 cut(s) 49, 76, 133, 1279
MaeI CTAG 1 cut(s) 554
MaeII ACGT 2 cut(s) 230, 1143
MaeIII GTNAC 6 cut(s) 212, 269, 368, 584, 881, 1127
MalI GATC 7 cut(s) 95, 186, 441, 457, 717, 951, 957
MboI GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
MboII GAAGA 6 cut(s) 228, 506, 517, 588, 881, 1351
MflI RGATCY 2 cut(s) 93, 955
MhlI GDGCHC 1 cut(s) 1274
MluCI AATT 5 cut(s) 417, 760, 925, 1042, 1165
MlyI GAGTC 4 cut(s) 337, 365, 700, 1223
MnlI CCTC 9 cut(s) 364, 925, 938, 1002, 1009, 1031, 1063, 1212, 1320
MroI TCCGGA 1 cut(s) 264
MseI TTAA 2 cut(s) 32, 981
MspA1I CMGCKG 2 cut(s) 832, 1300
MspI CCGG 4 cut(s) 38, 121, 265, 815
Mva1269I GAATGC 1 cut(s) 1345
MwoI GCNNNNNNNGC 5 cut(s) 62, 150, 159, 164, 649
NcoI CCATGG 1 cut(s) 1002
NdeII GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
NheI GCTAGC 1 cut(s) 553
NlaIII CATG 6 cut(s) 401, 1006, 1018, 1084, 1159, 1256
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 4 cut(s) 212, 368, 584, 881
NspI RCATGY 1 cut(s) 1018
NspV TTCGAA 1 cut(s) 1163
PaeR7I CTCGAG 1 cut(s) 373
PagI TCATGA 1 cut(s) 1252
PciI ACATGT 1 cut(s) 1014
PciSI GCTCTTC 2 cut(s) 489, 864
PctI GAATGC 1 cut(s) 1345
PfeI GAWTC 5 cut(s) 146, 631, 703, 791, 1160
PkrI GCNGC 4 cut(s) 64, 304, 549, 552
PleI GAGTC 4 cut(s) 337, 365, 699, 1222
PpsI GAGTC 4 cut(s) 337, 365, 699, 1222
PscI ACATGT 1 cut(s) 1014
PspN4I GGNNCC 1 cut(s) 221
PspXI VCTCGAGB 1 cut(s) 373
PstI CTGCAG 3 cut(s) 26, 552, 1102
PstNI CAGNNNCTG 1 cut(s) 1125
PsuI RGATCY 2 cut(s) 93, 955
PvuII CAGCTG 2 cut(s) 832, 1300
RsaI GTAC 4 cut(s) 47, 670, 1085, 1331
RsaNI GTAC 4 cut(s) 46, 669, 1084, 1330
SalI GTCGAC 1 cut(s) 1357
SapI GCTCTTC 2 cut(s) 489, 864
SaqAI TTAA 2 cut(s) 32, 981
SatI GCNGC 4 cut(s) 63, 303, 548, 551
Sau3AI GATC 7 cut(s) 93, 184, 439, 455, 715, 949, 955
SchI GAGTC 4 cut(s) 337, 365, 700, 1223
SduI GDGCHC 1 cut(s) 1274
SfaNI GCATC 4 cut(s) 49, 76, 133, 1279
SfcI CTRYAG 3 cut(s) 22, 548, 1098
Sfr274I CTCGAG 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 1163
SlaI CTCGAG 1 cut(s) 373
SmlI CTYRAG 3 cut(s) 373, 738, 1267
SmoI CTYRAG 3 cut(s) 373, 738, 1267
Sse9I AATT 5 cut(s) 417, 760, 925, 1042, 1165
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 554
StyI CCWWGG 3 cut(s) 291, 856, 1002
TaaI ACNGT 5 cut(s) 50, 112, 136, 1231, 1356
TaiI ACGT 2 cut(s) 233, 1146
TasI AATT 5 cut(s) 417, 760, 925, 1042, 1165
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 5 cut(s) 146, 631, 703, 791, 1160
Tru1I TTAA 2 cut(s) 32, 981
Tru9I TTAA 2 cut(s) 32, 981
TscAI CASTG 4 cut(s) 139, 182, 809, 1126
TseFI GTSAC 4 cut(s) 212, 368, 584, 881
TseI GCWGC 4 cut(s) 62, 302, 547, 550
Tsp45I GTSAC 4 cut(s) 212, 368, 584, 881
TspDTI ATGAA 2 cut(s) 386, 1065
TspRI CASTG 4 cut(s) 139, 182, 809, 1126
XagI CCTNNNNNAGG 1 cut(s) 214
XapI RAATTY 3 cut(s) 760, 925, 1165
XceI RCATGY 1 cut(s) 1018
XhoI CTCGAG 1 cut(s) 373
XmiI GTMKAC 2 cut(s) 1140, 1358
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.