Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Forward (+)

44730391 .. 44731579

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTGTCTTCAAGTACGAGTACGAGTTTACCTCTGTCATCCCCCCTGCTAGGTTGTTCAAGGCTTACGTTCTCGATGCTGACAATTTCATCCCCAAGATTGACCCACAGGCAGTTAAGTCCTTTGAGATCCTTGAAGGAGATGGTGGTGCTGGAACCATCAAGAAGATCACCTTCGGCGAAGGTAGCACTTACAGCTATGTGAAGCAAAGAATTGATAGCATGGACAAGGAGAACTTTGCCTACAGCTACAGTCTGATTGAGGGAACTCCCGACTCAATTGAGAAGATCTGCTACGAGACTAAGTTGGTGGCATCCGGCAGTGGTACCATCATCAAGAGCACCAGTGAATACCATGTCAAGGGTGATGTTGAGATCAAGGAAGAGCATATCAAGGCCCGGAAAGAGAAGGCTTCTCACCTCCACAAGGCCATTGAGGACTACCTCTTGGAGCACCATGATGCCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

5.52

Isoelectric Point (pI)

24.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 152	4.8e-19	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	124
AfaI	GTAC	3 cut(s)	17, 23, 328
AfiI	CCNNNNNNNGG	3 cut(s)	51, 361, 427
AgsI	TTSAA	3 cut(s)	13, 61, 137
AluBI	AGCT	2 cut(s)	198, 249
AluI	AGCT	2 cut(s)	198, 249
Alw21I	GWGCWC	2 cut(s)	344, 456
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	396, 429
Asp718I	GGTACC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	163, 377, 410
BanI	GGYRCC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
Bbv12I	GWGCWC	2 cut(s)	344, 456
BccI	CCATC	3 cut(s)	137, 167, 338
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	244, 250
BglII	AGATCT	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	157, 328
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	3 cut(s)	67, 323, 451
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 361, 427
Bse1I	ACTGG	1 cut(s)	345
BseGI	GGATG	3 cut(s)	39, 90, 314
BseLI	CCNNNNNNNGG	3 cut(s)	51, 361, 427
BseNI	ACTGG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	398, 431
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	344, 456
BsiSI	CCGG	2 cut(s)	318, 400
BslI	CCNNNNNNNGG	3 cut(s)	51, 361, 427
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	398, 431
Bsp1286I	GDGCHC	2 cut(s)	344, 456
Bsp143I	GATC	4 cut(s)	129, 168, 288, 375
BspANI	GGCC	2 cut(s)	398, 431
BspLI	GGNNCC	2 cut(s)	157, 328
BspPI	GGATC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	4 cut(s)	129, 168, 288, 375
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	39, 90, 314
BstKTI	GATC	4 cut(s)	132, 171, 291, 378
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	129, 168, 288, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 195
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	244, 250
BstX2I	RGATCY	2 cut(s)	129, 288
BstYI	RGATCY	2 cut(s)	129, 288
BsuRI	GGCC	2 cut(s)	398, 431
BtsCI	GGATG	3 cut(s)	39, 90, 314
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 352
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	16, 22, 327
CviAII	CATG	3 cut(s)	223, 356, 458
CviJI	RGCY	6 cut(s)	65, 198, 249, 398, 413, 431
CviKI_1	RGCY	6 cut(s)	65, 198, 249, 398, 413, 431
CviQI	GTAC	3 cut(s)	16, 22, 327
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	131, 170, 290, 377
DpnII	GATC	4 cut(s)	129, 168, 288, 375
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	425
FaeI	CATG	3 cut(s)	226, 359, 461
FaiI	YATR	5 cut(s)	201, 224, 357, 390, 459
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 221, 253
FatI	CATG	3 cut(s)	222, 355, 457
FokI	GGATG	3 cut(s)	26, 77, 301
FspBI	CTAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	398, 431
HapII	CCGG	2 cut(s)	318, 400
Hin1II	CATG	3 cut(s)	226, 359, 461
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	318, 400
HphI	GGTGA	3 cut(s)	163, 377, 410
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	4 cut(s)	74, 163, 272, 337
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	4 cut(s)	131, 176, 184, 403
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 195
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	226, 359, 461
KpnI	GGTACC	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	129, 168, 288, 375
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	6 cut(s)	60, 95, 138, 331, 358, 413
LweI	GCATC	3 cut(s)	67, 323, 451
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	69
MalI	GATC	4 cut(s)	131, 170, 290, 377
MboI	GATC	4 cut(s)	129, 168, 288, 375
MboII	GAAGA	3 cut(s)	178, 298, 395
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	2 cut(s)	129, 288
MhlI	GDGCHC	2 cut(s)	344, 456
MluCI	AATT	3 cut(s)	85, 213, 279
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	5 cut(s)	43, 256, 430, 431, 455
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	2 cut(s)	318, 400
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	186, 195
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	4 cut(s)	129, 168, 288, 375
NlaIII	CATG	3 cut(s)	226, 359, 461
NlaIV	GGNNCC	2 cut(s)	157, 328
PciSI	GCTCTTC	1 cut(s)	378
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	157, 328
PspPI	GGNCC	1 cut(s)	397
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PsuI	RGATCY	2 cut(s)	129, 288
RsaI	GTAC	3 cut(s)	17, 23, 328
RsaNI	GTAC	3 cut(s)	16, 22, 327
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	129, 168, 288, 375
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	344, 456
SetI	ASST	9 cut(s)	35, 56, 72, 176, 187, 200, 251, 423, 447
SfaNI	GCATC	3 cut(s)	67, 323, 451
SfcI	CTRYAG	2 cut(s)	244, 250
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	3 cut(s)	85, 213, 279
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	85, 213, 279
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	328, 352
TspDTI	ATGAA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	328, 352
XagI	CCTNNNNNAGG	1 cut(s)	425
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.