Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

2036024 .. 2037254

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCAGCACATCTTTGCCTTTCCTGCGATGCGAAGGTCCATTCGGCAAACACTCTTTAACCGGTATATGCGCAGTATCTTGTGTTATTCGTGCAGAGACCCGGCTTATATTCAGTGTTTGGATCACAAGATGTTTATGTGCTTTGCCTGTGAGAGTGCTTTGCACATGATCGCTTCCCAACATCAGAAAAAGATTCTTGACTTGAAAAGGCTTCAGCTTGCCGAGGGGAATAGACCTTCGCTGCTGATACGCGGTACAGAACAAATTGACCTATCTTCCTCAGTACTTCAGACATCAAAGAGGCTCAATGTTCATCTTGATCAGCATTTACAACATTCCCAGAATTCCGCCACTAAATTTAGGCAAAGGGACAGTCTAGTTCAGGAGCTGAAAGTTGATCATTTATCATTTCCATTTTCTCAAATGGAGCATTGCAACCATCTTCAACTGCTGGACTTCCATTGCATACAGAATCCTTTTGGCAATGCAGAAGTATGGTTCAAAGGGTTTGTGAAGAACTTGTGTTGTCCTGATGATTTCAATATACCTGATGTTGATATGACAATTCAAAACTTCAAAGAATTATTCGGAGGTGATCAAGATCCTATCAGAGCTGCAGTGCTTCATGTTAAAGATGTGTTATACTCGTTGGTGGAGAAGAGCATATCCGTTGATAAATCAGATAATGGCAATGCAAGTGCAGTCGTGGAACATGATGCATCTGAGGTTTCGTCTGTTTTCATTAATCGGTCACCTGACTTTGACAACGATAAGGCTTGTAACGAACCTCAAAACCATCAACAGAAAATGGATTCTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

274

Amino Acids

31.4

Weight (kDa)

6.38

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	71
AccII	CGCG	1 cut(s)	252
AciI	CCGC	2 cut(s)	252, 348
AclWI	GGATC	2 cut(s)	129, 596
AcsI	RAATTY	2 cut(s)	343, 356
AcuI	CTGAAG	2 cut(s)	197, 272
AfaI	GTAC	2 cut(s)	256, 285
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	205, 446, 502, 541, 569, 577
AluBI	AGCT	3 cut(s)	217, 388, 614
AluI	AGCT	3 cut(s)	217, 388, 614
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	129, 596
AlwNI	CAGNNNCTG	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	4, 241, 614
ApoI	RAATTY	2 cut(s)	343, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AseI	ATTAAT	1 cut(s)	744
AsiGI	ACCGGT	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	605, 744
AvaII	GGWCC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	16, 228, 601
BccI	CCATC	2 cut(s)	447, 804
BclI	TGATCA	3 cut(s)	319, 397, 595
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	3 cut(s)	5, 242, 615
BlsI	GCNGC	3 cut(s)	6, 243, 616
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	3 cut(s)	18, 706, 728
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	60
Bse3DI	GCAATG	4 cut(s)	430, 460, 490, 697
Bse8I	GATNNNNATC	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	600
BseMI	GCAATG	4 cut(s)	430, 460, 490, 697
BseMII	CTCAG	2 cut(s)	294, 714
BseXI	GCAGC	3 cut(s)	16, 228, 601
BsgI	GTGCAG	2 cut(s)	112, 720
Bsh1236I	CGCG	1 cut(s)	252
BshTI	ACCGGT	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	61, 101
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	90
Bsp143I	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
BspACI	CCGC	2 cut(s)	252, 348
BspCNI	CTCAG	2 cut(s)	293, 715
BspFNI	CGCG	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	2 cut(s)	129, 596
BspQI	GCTCTTC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	4 cut(s)	430, 460, 490, 697
BsrFI	RCCGGY	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	280, 723
BstEII	GGTNACC	1 cut(s)	750
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	6 cut(s)	124, 171, 322, 400, 598, 604
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	16, 228, 601
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	119, 624
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	255, 284
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	3 cut(s)	166, 626, 713
CviJI	RGCY	7 cut(s)	104, 211, 217, 304, 388, 614, 776
CviKI_1	RGCY	7 cut(s)	104, 211, 217, 304, 388, 614, 776
CviQI	GTAC	2 cut(s)	255, 284
DdeI	CTNAG	2 cut(s)	280, 723
DpnI	GATC	6 cut(s)	123, 170, 321, 399, 597, 603
DpnII	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
EciI	GGCGGA	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	197, 272
Eco91I	GGTNACC	1 cut(s)	750
EcoO65I	GGTNACC	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	721
FaeI	CATG	3 cut(s)	169, 629, 716
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	165, 625, 712
FbaI	TGATCA	3 cut(s)	319, 397, 595
Fnu4HI	GCNGC	3 cut(s)	5, 242, 615
Fsp4HI	GCNGC	3 cut(s)	5, 242, 615
FspBI	CTAG	1 cut(s)	377
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	5, 242, 615
HapII	CCGG	2 cut(s)	61, 101
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	169, 629, 716
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	193, 472, 812
HpaII	CCGG	2 cut(s)	61, 101
HphI	GGTGA	2 cut(s)	605, 744
Hpy188I	TCNGA	6 cut(s)	186, 291, 590, 611, 682, 724
Hpy188III	TCNNGA	5 cut(s)	197, 317, 383, 530, 599
HpyAV	CCTTC	2 cut(s)	27, 246
HpyCH4III	ACNGT	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	280, 723
Hsp92II	CATG	3 cut(s)	169, 629, 716
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	319, 397, 595
Kzo9I	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	2 cut(s)	385, 427
Lsp1109I	GCAGC	3 cut(s)	16, 228, 601
LweI	GCATC	3 cut(s)	18, 706, 728
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	750, 779
MalI	GATC	6 cut(s)	123, 170, 321, 399, 597, 603
MboI	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
MboII	GAAGA	4 cut(s)	267, 434, 526, 670
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	5 cut(s)	264, 343, 356, 564, 581
MnlI	CCTC	6 cut(s)	217, 289, 294, 584, 718, 798
Mph1103I	ATGCAT	1 cut(s)	721
MseI	TTAA	3 cut(s)	57, 630, 744
MspI	CCGG	2 cut(s)	61, 101
MspR9I	CCNGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
NlaIII	CATG	3 cut(s)	169, 629, 716
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	750
NsbI	TGCGCA	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	193, 472, 812
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	6, 243, 616
PshBI	ATTAAT	1 cut(s)	744
PspEI	GGTNACC	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	2 cut(s)	256, 285
RsaNI	GTAC	2 cut(s)	255, 284
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	57, 630, 744
SatI	GCNGC	3 cut(s)	5, 242, 615
Sau3AI	GATC	6 cut(s)	121, 168, 319, 397, 595, 601
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	18, 706, 728
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	5 cut(s)	264, 343, 356, 564, 581
SsiI	CCGC	2 cut(s)	252, 348
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	374
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	5 cut(s)	264, 343, 356, 564, 581
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	3 cut(s)	193, 472, 812
Tru1I	TTAA	3 cut(s)	57, 630, 744
Tru9I	TTAA	3 cut(s)	57, 630, 744
TscAI	CASTG	2 cut(s)	119, 624
TseFI	GTSAC	1 cut(s)	750
TseI	GCWGC	3 cut(s)	4, 241, 614
Tsp45I	GTSAC	1 cut(s)	750
TspDTI	ATGAA	3 cut(s)	302, 614, 730
TspGWI	ACGGA	2 cut(s)	658, 807
TspRI	CASTG	2 cut(s)	119, 624
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	2 cut(s)	343, 356
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.