Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

55242809 .. 55245267

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGAAAATTTGTGACTTTTGCTCGACCTCAAGCGGAGCTGTACACTGTAAAGCCGATGCGGCACATCTCTGCCTGCCTTGCAATGCAAAACTTCATTCAGCTAACCAAGTAGTGAACTGGCATCCCCGTACCATCTTATACGACTCCGGCAACTACCTCTCAGCTTATGTTGGCTGTTTGGATCACGGCAGCGGTGACGGTGGCATCGAGCTTATGTGCCAGTACTTGTGTGACCGGAACCACCATGTGACGACATCCCAGGTGCATCAGAGACTTTCAATCAACGGTTACACGGGTTGCCCGGCTGCCGAGGACTTAGCAGCAATTTGGGATTTGCAAGTGAATCATGATCACACTAGTAGTACAAGTCATGTGGGGAGCTTGGATATTTTGGGCCAGATTCTCGACTTGCAAATGATTCAGACTAGTGTTCCTCTTGGACTGTGCAGCAATACAACTAGTCAGCTGCGATCTGAAAAGATGCAAGACCAGCTTGGGGTTTGTGATGATGATTCAAATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAAATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAACGGCAATTATCACAATCTAGATACGGCGGCAGCCTCCATGGACGGTCCGAGGGAAAGCTCTTCTATTCCTGTCAATGGATCTTTATGTTCGCCCTACTCGTCAGTACTCTACAATCCTTTAAGCAGTAGTGTCGTTTCACATGGTGTCATGGGTGAACAAGTCTTTGACGCCAGAGCAAACGCCGTGATGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTATGAAAGGAAAATTCGATATCAAAAGAGGAAAGCCATAGCTGATACACGTAAGCGGGTGGGAGGTCGATTTGCAAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

311

Amino Acids

34.19

Weight (kDa)

5.88

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	269 - 311	1.6e-14	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	36, 62, 195, 659, 907
AclWI	GGATC	2 cut(s)	192, 718
AcsI	RAATTY	2 cut(s)	9, 864
AcyI	GRCGYC	1 cut(s)	801
AdeI	CACNNNGTG	2 cut(s)	250, 776
AfaI	GTAC	6 cut(s)	45, 133, 227, 367, 738, 827
AfiI	CCNNNNNNNGG	4 cut(s)	499, 556, 707, 822
AflIII	ACRYGT	1 cut(s)	899
AgsI	TTSAA	2 cut(s)	282, 519
AhlI	ACTAGT	3 cut(s)	359, 428, 461
AjnI	CCWGG	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	268, 567
AlwI	GGATC	2 cut(s)	192, 718
AlwNI	CAGNNNCTG	1 cut(s)	613
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	7 cut(s)	192, 308, 323, 450, 469, 613, 662
ApoI	RAATTY	2 cut(s)	9, 864
AspS9I	GGNCC	2 cut(s)	397, 677
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	209, 797
AvaII	GGWCC	1 cut(s)	677
BauI	CACGAG	1 cut(s)	846
BbvI	GCAGC	7 cut(s)	204, 295, 335, 456, 462, 600, 674
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	4 cut(s)	205, 649, 672, 800
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	3 cut(s)	352, 583, 622
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	268, 567
BcuI	ACTAGT	3 cut(s)	359, 428, 461
BfaI	CTAG	5 cut(s)	360, 429, 462, 542, 650
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	9 cut(s)	63, 193, 309, 324, 451, 470, 614, 660, 663
BlsI	GCNGC	9 cut(s)	64, 194, 310, 325, 452, 471, 615, 661, 664
BmcAI	AGTACT	2 cut(s)	227, 738
Bme1390I	CCNGG	2 cut(s)	263, 305
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	397, 677
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	263, 305
BmsI	GCATC	5 cut(s)	49, 133, 216, 277, 474
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	902
BsaBI	GATNNNNATC	2 cut(s)	537, 588
BsaHI	GRCGYC	1 cut(s)	801
BsaJI	CCNNGG	4 cut(s)	261, 312, 669, 680
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	4 cut(s)	499, 556, 707, 822
Bse1I	ACTGG	2 cut(s)	125, 223
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	2 cut(s)	537, 588
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	4 cut(s)	261, 312, 669, 680
BseGI	GGATG	2 cut(s)	124, 257
BseJI	GATNNNNATC	2 cut(s)	537, 588
BseLI	CCNNNNNNNGG	4 cut(s)	499, 556, 707, 822
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	177, 590
BseNI	ACTGG	2 cut(s)	125, 223
BseXI	GCAGC	7 cut(s)	204, 295, 335, 456, 462, 600, 674
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	150, 238, 305
BslI	CCNNNNNNNGG	4 cut(s)	499, 556, 707, 822
BsmAI	GTCTC	2 cut(s)	268, 567
BsmBI	CGTCTC	1 cut(s)	567
BsmI	GAATGC	2 cut(s)	545, 841
BsnI	GGCC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	5 cut(s)	36, 62, 195, 659, 907
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	2 cut(s)	176, 591
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	192, 718
BspQI	GCTCTTC	1 cut(s)	697
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	125, 223
BssECI	CCNNGG	4 cut(s)	261, 312, 669, 680
BssMI	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
BssNI	GRCGYC	1 cut(s)	801
BssSI	CACGAG	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	669
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	5 cut(s)	50, 203, 290, 447, 677
Bst6I	CTCTTC	1 cut(s)	697
BstACI	GRCGYC	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	77, 928
BstDEI	CTNAG	3 cut(s)	163, 319, 599
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	124, 257
BstKTI	GATC	7 cut(s)	187, 355, 476, 586, 592, 625, 713
BstMAI	GTCTC	2 cut(s)	268, 567
BstMBI	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 81, 493, 838
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	261, 303
BstV1I	GCAGC	7 cut(s)	204, 295, 335, 456, 462, 600, 674
BstX2I	RGATCY	2 cut(s)	589, 710
BstYI	RGATCY	2 cut(s)	589, 710
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	124, 257
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	77, 928
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	397, 677
CpoI	CGGWCCG	1 cut(s)	677
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	6 cut(s)	44, 132, 226, 366, 737, 826
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CspI	CGGWCCG	1 cut(s)	677
CviAII	CATG	6 cut(s)	248, 350, 374, 670, 773, 781
CviQI	GTAC	6 cut(s)	44, 132, 226, 366, 737, 826
DdeI	CTNAG	3 cut(s)	163, 319, 599
DpnI	GATC	7 cut(s)	186, 354, 475, 585, 591, 624, 712
DpnII	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
DraIII	CACNNNGTG	2 cut(s)	250, 776
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	669
Eco32I	GATATC	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	872
EcoT14I	CCWWGG	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	669
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	6 cut(s)	251, 353, 377, 673, 776, 784
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FatI	CATG	6 cut(s)	247, 349, 373, 669, 772, 780
FauI	CCCGC	1 cut(s)	900
FbaI	TGATCA	3 cut(s)	352, 583, 622
Fnu4HI	GCNGC	9 cut(s)	63, 193, 309, 324, 451, 470, 614, 660, 663
FokI	GGATG	2 cut(s)	111, 244
Fsp4HI	GCNGC	9 cut(s)	63, 193, 309, 324, 451, 470, 614, 660, 663
FspBI	CTAG	5 cut(s)	360, 429, 462, 542, 650
GluI	GCNGC	9 cut(s)	63, 193, 309, 324, 451, 470, 614, 660, 663
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	3 cut(s)	150, 238, 305
HgaI	GACGC	1 cut(s)	809
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	6 cut(s)	251, 353, 377, 673, 776, 784
HinfI	GANTC	5 cut(s)	146, 346, 403, 421, 515
HpaII	CCGG	3 cut(s)	150, 238, 305
HphI	GGTGA	2 cut(s)	209, 797
Hpy166II	GTNNAC	3 cut(s)	46, 118, 788
Hpy188I	TCNGA	6 cut(s)	273, 426, 478, 572, 600, 681
Hpy188III	TCNNGA	5 cut(s)	350, 407, 550, 587, 650
Hpy8I	GTNNAC	3 cut(s)	46, 118, 788
HpyCH4III	ACNGT	5 cut(s)	50, 203, 290, 447, 677
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	8 cut(s)	84, 89, 268, 340, 415, 450, 487, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 81, 493, 838
HpyF3I	CTNAG	3 cut(s)	163, 319, 599
HpySE526I	ACGT	1 cut(s)	901
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	6 cut(s)	251, 353, 377, 673, 776, 784
Ksp22I	TGATCA	3 cut(s)	352, 583, 622
Kzo9I	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
LguI	GCTCTTC	1 cut(s)	697
LmnI	GCTCC	2 cut(s)	38, 381
Lsp1109I	GCAGC	7 cut(s)	204, 295, 335, 456, 462, 600, 674
LweI	GCATC	5 cut(s)	49, 133, 216, 277, 474
MaeI	CTAG	5 cut(s)	360, 429, 462, 542, 650
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	5 cut(s)	14, 197, 233, 250, 290
MalI	GATC	7 cut(s)	186, 354, 475, 585, 591, 624, 712
MboI	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
MboII	GAAGA	3 cut(s)	572, 684, 847
MflI	RGATCY	2 cut(s)	589, 710
MluCI	AATT	5 cut(s)	9, 327, 637, 864, 931
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	9 cut(s)	40, 170, 307, 447, 675, 676, 816, 873, 908
MseI	TTAA	2 cut(s)	752, 934
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	195, 469
MspI	CCGG	3 cut(s)	150, 238, 305
MspR9I	CCNGG	2 cut(s)	263, 305
Mva1269I	GAATGC	2 cut(s)	545, 841
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	62, 81, 493, 838
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
NlaIII	CATG	6 cut(s)	251, 353, 377, 673, 776, 784
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	4 cut(s)	14, 197, 233, 250
PagI	TCATGA	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 728
PctI	GAATGC	2 cut(s)	545, 841
PfeI	GAWTC	4 cut(s)	346, 403, 421, 515
PkrI	GCNGC	9 cut(s)	64, 194, 310, 325, 452, 471, 615, 661, 664
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	902
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	2 cut(s)	397, 677
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	589, 710
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	6 cut(s)	45, 133, 227, 367, 738, 827
RsaNI	GTAC	6 cut(s)	44, 132, 226, 366, 737, 826
RseI	CAYNNNNRTG	1 cut(s)	846
Rsr2I	CGGWCCG	1 cut(s)	677
RsrII	CGGWCCG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	697
SaqAI	TTAA	2 cut(s)	752, 934
SatI	GCNGC	9 cut(s)	63, 193, 309, 324, 451, 470, 614, 660, 663
Sau3AI	GATC	7 cut(s)	184, 352, 473, 583, 589, 622, 710
Sau96I	GGNCC	2 cut(s)	397, 677
ScaI	AGTACT	2 cut(s)	227, 738
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	263, 305
SfaNI	GCATC	5 cut(s)	49, 133, 216, 277, 474
SinI	GGWCC	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	3 cut(s)	359, 428, 461
Sse9I	AATT	5 cut(s)	9, 327, 637, 864, 931
SsiI	CCGC	5 cut(s)	36, 62, 195, 659, 907
SspMI	CTAG	5 cut(s)	360, 429, 462, 542, 650
StyD4I	CCNGG	2 cut(s)	261, 303
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	5 cut(s)	50, 203, 290, 447, 677
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	5 cut(s)	26, 210, 408, 868, 919
TasI	AATT	5 cut(s)	9, 327, 637, 864, 931
TatI	WGTACW	4 cut(s)	43, 225, 365, 736
TauI	GCSGC	2 cut(s)	65, 662
TfiI	GAWTC	4 cut(s)	346, 403, 421, 515
Tru1I	TTAA	2 cut(s)	752, 934
Tru9I	TTAA	2 cut(s)	752, 934
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	4 cut(s)	14, 197, 233, 250
TseI	GCWGC	7 cut(s)	192, 308, 323, 450, 469, 613, 662
Tsp45I	GTSAC	4 cut(s)	14, 197, 233, 250
TspDTI	ATGAA	2 cut(s)	86, 870
TspRI	CASTG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	2 cut(s)	9, 864
XbaI	TCTAGA	1 cut(s)	649
XspI	CTAG	5 cut(s)	360, 429, 462, 542, 650
ZrmI	AGTACT	2 cut(s)	227, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.