Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

55246266 .. 55247529

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAAATTTGCGAGTTCTGCTTGGCATCAAGGCCAGTGGTACACTGTAAAGCCGCTGCAGCACATCTTTGCCTTTCCTGTGATATCGATGCCAAAATCCACTCAGCTAACGCAATTGTAAACCGGCACCACCGTACAGTCTTATGTGATTCATGCAACTACCTCTCAGCCTATGTTCAGTGTCTAGATCACAACGATCACCGCATCAGGGTCATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTAGTTCCCGATTACACCCAAAAAGGCAATTCTCCGGTTACACAGGTTGCCCTTCTGCTGAGCAGTTTGCAGCAATGTGGGGTTTCCAGCTGAATGATGACATCACTCTCTCTATAACCAGTAGATATTGTGTGGAACACTTAAATACTCTTGGCCACCAGGTTCTTCACTTGAAAAGGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATTCAGTACATCAGCTTATATATGGCCAAGAACAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCATACAGAATCAATTTGGCAGTGGACGAGTCCGGTTCAAAGTACTAGTCAGGTTGATTCTCAAAATGTGCAAGATCGGATCCAGGTCTGCAAGAAACTCACTTGTCCTGATGATTCCAATTTATCGAATGCTGAATGTTTGGCAGTCCTAAACTTTGAATTAGGATTACTCGTAGATGATGATAATAATCATGATGATGTACCGTTGTCTTATGCCTCCTCCACCATGGACCAATCAAGAGCAGAAGCGTCTATTCACATCAATGGGTCTTCATCTTCGTCGACCTCTTCGTCCGTATTCTGTACAATTCCAGGCAATGTTAGTTCCTGCGGCCTCAAGGGTGAAGAACATTTGGAAGCGAGAGCAAAGGCCATGATTAGGTACAAAGAGAAGAAGCGATCCCGTTCGCATGCAAAAACAATTCGATATCCAAATAGGAAAGCAAGAGCTGATGTACGTAAGCGTGTGAATGGCCGGTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

348

Amino Acids

38.92

Weight (kDa)

7.29

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	308 - 348	3.1e-11	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	850
AccB1I	GGYRCC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	842
AciI	CCGC	3 cut(s)	57, 205, 891
AclWI	GGATC	3 cut(s)	634, 647, 954
AcoI	YGGCCR	3 cut(s)	406, 499, 1033
AcsI	RAATTY	2 cut(s)	9, 475
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	8 cut(s)	45, 139, 483, 604, 762, 865, 944, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	211, 939
AgsI	TTSAA	4 cut(s)	427, 474, 599, 719
AhlI	ACTAGT	1 cut(s)	605
AjnI	CCWGG	3 cut(s)	411, 642, 871
AluBI	AGCT	5 cut(s)	110, 343, 439, 490, 1010
AluI	AGCT	5 cut(s)	110, 343, 439, 490, 1010
AlwI	GGATC	3 cut(s)	634, 647, 954
AoxI	GGCC	6 cut(s)	35, 406, 499, 892, 930, 1033
ApeKI	GCWGC	3 cut(s)	59, 62, 323
ApoI	RAATTY	2 cut(s)	9, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	3 cut(s)	194, 512, 914
AvaII	GGWCC	1 cut(s)	790
BalI	TGGCCA	2 cut(s)	408, 501
BamHI	GGATCC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	46, 74, 335
BciT130I	CCWGG	3 cut(s)	413, 644, 873
BclI	TGATCA	1 cut(s)	445
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	3 cut(s)	188, 255, 606
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	5 cut(s)	57, 60, 63, 324, 892
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	5 cut(s)	58, 61, 64, 325, 893
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	3 cut(s)	413, 644, 873
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	2 cut(s)	131, 641
BmrFI	CCNGG	3 cut(s)	413, 644, 873
BmsI	GCATC	3 cut(s)	38, 82, 216
BpiI	GAAGAC	1 cut(s)	822
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	881
Bsa29I	ATCGAT	2 cut(s)	90, 468
BsaAI	YACGTR	1 cut(s)	1019
BsaBI	GATNNNNATC	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	2 cut(s)	287, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 939
Bse118I	RCCGGY	2 cut(s)	126, 1035
Bse1I	ACTGG	3 cut(s)	38, 372, 456
Bse3DI	GCAATG	2 cut(s)	333, 883
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	3 cut(s)	413, 644, 873
BseCI	ATCGAT	2 cut(s)	90, 468
BseDI	CCNNGG	1 cut(s)	786
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	2 cut(s)	211, 939
BseMI	GCAATG	2 cut(s)	333, 883
BseMII	CTCAG	3 cut(s)	120, 183, 303
BseNI	ACTGG	3 cut(s)	38, 372, 456
BseRI	GAGGAG	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	46, 74, 335
BshFI	GGCC	6 cut(s)	37, 408, 501, 894, 932, 1035
BshNI	GGYRCC	1 cut(s)	129
BshVI	ATCGAT	2 cut(s)	90, 468
BsiSI	CCGG	4 cut(s)	127, 288, 593, 1036
BslI	CCNNNNNNNGG	2 cut(s)	211, 939
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	6 cut(s)	37, 408, 501, 894, 932, 1035
Bsp1407I	TGTACA	1 cut(s)	863
Bsp143I	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	3 cut(s)	57, 205, 891
BspANI	GGCC	6 cut(s)	37, 408, 501, 894, 932, 1035
BspCNI	CTCAG	3 cut(s)	119, 182, 304
BspDI	ATCGAT	2 cut(s)	90, 468
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	131, 641
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	3 cut(s)	634, 647, 954
BspT107I	GGYRCC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	333, 883
BsrFI	RCCGGY	2 cut(s)	126, 1035
BsrGI	TGTACA	1 cut(s)	863
BsrI	ACTGG	3 cut(s)	38, 372, 456
BssAI	RCCGGY	2 cut(s)	126, 1035
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	413, 644, 873
Bst4CI	ACNGT	5 cut(s)	50, 137, 142, 547, 765
Bst6I	CTCTTC	1 cut(s)	853
BstAUI	TGTACA	1 cut(s)	863
BstBAI	YACGTR	1 cut(s)	1019
BstC8I	GCNNGC	2 cut(s)	242, 972
BstDEI	CTNAG	3 cut(s)	106, 169, 312
BstDSI	CCRYGG	1 cut(s)	786
BstKTI	GATC	7 cut(s)	193, 202, 252, 448, 637, 642, 962
BstMBI	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 62
BstNI	CCWGG	3 cut(s)	413, 644, 873
BstNSI	RCATGY	1 cut(s)	974
BstSCI	CCNGG	3 cut(s)	411, 642, 871
BstSFI	CTRYAG	1 cut(s)	60
BstSNI	TACGTA	1 cut(s)	1019
BstV1I	GCAGC	3 cut(s)	46, 74, 335
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	2 cut(s)	249, 639
BstYI	RGATCY	2 cut(s)	249, 639
Bsu15I	ATCGAT	2 cut(s)	90, 468
BsuRI	GGCC	6 cut(s)	37, 408, 501, 894, 932, 1035
BsuTUI	ATCGAT	2 cut(s)	90, 468
BtgI	CCRYGG	1 cut(s)	786
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	5 cut(s)	45, 46, 188, 441, 587
Cac8I	GCNNGC	2 cut(s)	242, 972
CciI	TCATGA	1 cut(s)	751
Cfr10I	RCCGGY	2 cut(s)	126, 1035
Cfr13I	GGNCC	1 cut(s)	790
ClaI	ATCGAT	2 cut(s)	90, 468
CseI	GACGC	1 cut(s)	798
CsiI	ACCWGGT	1 cut(s)	411
Csp6I	GTAC	8 cut(s)	44, 138, 482, 603, 761, 864, 943, 1016
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	7 cut(s)	156, 217, 245, 752, 787, 934, 971
CviQI	GTAC	8 cut(s)	44, 138, 482, 603, 761, 864, 943, 1016
DdeI	CTNAG	3 cut(s)	106, 169, 312
DpnI	GATC	7 cut(s)	192, 201, 251, 447, 636, 641, 961
DpnII	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
DrdI	GACNNNNNNGTC	1 cut(s)	850
DseDI	GACNNNNNNGTC	1 cut(s)	850
EaeI	YGGCCR	3 cut(s)	406, 499, 1033
Eam1104I	CTCTTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	853
Eco105I	TACGTA	1 cut(s)	1019
Eco130I	CCWWGG	1 cut(s)	786
Eco32I	GATATC	2 cut(s)	88, 989
Eco47I	GGWCC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	411, 642, 871
EcoRV	GATATC	2 cut(s)	88, 989
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	7 cut(s)	159, 220, 248, 755, 790, 937, 974
FatI	CATG	7 cut(s)	155, 216, 244, 751, 786, 933, 970
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	842
Fnu4HI	GCNGC	5 cut(s)	57, 60, 63, 324, 892
Fsp4HI	GCNGC	5 cut(s)	57, 60, 63, 324, 892
FspBI	CTAG	3 cut(s)	188, 255, 606
GluI	GCNGC	5 cut(s)	57, 60, 63, 324, 892
HaeIII	GGCC	6 cut(s)	37, 408, 501, 894, 932, 1035
HapII	CCGG	4 cut(s)	127, 288, 593, 1036
HgaI	GACGC	1 cut(s)	798
Hin1II	CATG	7 cut(s)	159, 220, 248, 755, 790, 937, 974
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HinfI	GANTC	7 cut(s)	152, 470, 514, 569, 589, 617, 674
HpaII	CCGG	4 cut(s)	127, 288, 593, 1036
HphI	GGTGA	3 cut(s)	194, 512, 914
Hpy166II	GTNNAC	4 cut(s)	46, 124, 585, 843
Hpy188I	TCNGA	1 cut(s)	639
Hpy188III	TCNNGA	6 cut(s)	188, 261, 449, 668, 752, 798
Hpy8I	GTNNAC	4 cut(s)	46, 124, 585, 843
Hpy99I	CGWCG	1 cut(s)	844
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	5 cut(s)	50, 137, 142, 547, 765
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	7 cut(s)	62, 159, 323, 562, 631, 651, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 62
HpyF3I	CTNAG	3 cut(s)	106, 169, 312
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	7 cut(s)	159, 220, 248, 755, 790, 937, 974
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
Lsp1109I	GCAGC	3 cut(s)	46, 74, 335
LweI	GCATC	3 cut(s)	38, 82, 216
MabI	ACCWGGT	1 cut(s)	411
MaeI	CTAG	3 cut(s)	188, 255, 606
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	2 cut(s)	230, 290
MalI	GATC	7 cut(s)	192, 201, 251, 447, 636, 641, 961
MboI	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
MboII	GAAGA	7 cut(s)	410, 519, 822, 828, 840, 917, 964
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	2 cut(s)	249, 639
MlsI	TGGCCA	2 cut(s)	408, 501
MluCI	AATT	9 cut(s)	9, 117, 281, 475, 573, 679, 719, 867, 981
MluNI	TGGCCA	2 cut(s)	408, 501
MlyI	GAGTC	2 cut(s)	523, 598
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	5 cut(s)	176, 787, 790, 856, 905
Mox20I	TGGCCA	2 cut(s)	408, 501
MscI	TGGCCA	2 cut(s)	408, 501
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	3 cut(s)	228, 756, 822
Msp20I	TGGCCA	2 cut(s)	408, 501
MspA1I	CMGCKG	2 cut(s)	59, 343
MspI	CCGG	4 cut(s)	127, 288, 593, 1036
MspR9I	CCNGG	3 cut(s)	413, 644, 873
MunI	CAATTG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	3 cut(s)	413, 644, 873
MwoI	GCNNNNNNNGC	2 cut(s)	21, 62
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
NlaIII	CATG	7 cut(s)	159, 220, 248, 755, 790, 937, 974
NlaIV	GGNNCC	2 cut(s)	131, 641
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	974
PaeI	GCATGC	1 cut(s)	974
PagI	TCATGA	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	848
PctI	GAATGC	1 cut(s)	694
PfeI	GAWTC	5 cut(s)	152, 470, 569, 617, 674
PkrI	GCNGC	5 cut(s)	58, 61, 64, 325, 893
PleI	GAGTC	2 cut(s)	522, 597
PpsI	GAGTC	2 cut(s)	522, 597
Ppu21I	YACGTR	1 cut(s)	1019
Psp6I	CCWGG	3 cut(s)	411, 642, 871
PspGI	CCWGG	3 cut(s)	411, 642, 871
PspN4I	GGNNCC	2 cut(s)	131, 641
PspPI	GGNCC	1 cut(s)	790
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	249, 639
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	8 cut(s)	45, 139, 483, 604, 762, 865, 944, 1017
RsaNI	GTAC	8 cut(s)	44, 138, 482, 603, 761, 864, 943, 1016
RseI	CAYNNNNRTG	3 cut(s)	228, 756, 822
SalI	GTCGAC	1 cut(s)	841
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	5 cut(s)	57, 60, 63, 324, 892
Sau3AI	GATC	7 cut(s)	190, 199, 249, 445, 634, 639, 959
Sau96I	GGNCC	1 cut(s)	790
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	2 cut(s)	523, 598
ScrFI	CCNGG	3 cut(s)	413, 644, 873
SexAI	ACCWGGT	1 cut(s)	411
SfaNI	GCATC	3 cut(s)	38, 82, 216
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	3 cut(s)	228, 756, 822
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SnaBI	TACGTA	1 cut(s)	1019
SpeI	ACTAGT	1 cut(s)	605
SphI	GCATGC	1 cut(s)	974
Sse9I	AATT	9 cut(s)	9, 117, 281, 475, 573, 679, 719, 867, 981
SsiI	CCGC	3 cut(s)	57, 205, 891
SspMI	CTAG	3 cut(s)	188, 255, 606
StyD4I	CCNGG	3 cut(s)	411, 642, 871
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	5 cut(s)	50, 137, 142, 547, 765
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	5 cut(s)	90, 468, 686, 842, 985
TasI	AATT	9 cut(s)	9, 117, 281, 475, 573, 679, 719, 867, 981
TatI	WGTACW	3 cut(s)	481, 602, 863
TauI	GCSGC	2 cut(s)	59, 894
TfiI	GAWTC	5 cut(s)	152, 470, 569, 617, 674
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	5 cut(s)	45, 53, 188, 448, 587
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	3 cut(s)	59, 62, 323
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	144, 822
TspGWI	ACGGA	2 cut(s)	546, 844
TspRI	CASTG	5 cut(s)	45, 53, 188, 448, 587
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	2 cut(s)	9, 475
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	974
XmiI	GTMKAC	1 cut(s)	842
XspI	CTAG	3 cut(s)	188, 255, 606
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.