Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

56352013 .. 56355533

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGAAAATTTGCGAGTTCTGCTTGGCATCAAGGCCAGTGGTACACTGTAAAGCCGATGCAGCACATCTTTGCCTTTCATGCGATGCCAAAATCCACTCAGCTAACGCAATTGTCAACCGGCACCACCGTACAGTCTTATGTGATTCATGCAACTACCTGTCAGCCTATGTTCAGTGTCTAGATCACAACGATCACCGCATCAGGCTCATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTAGTTCCCGATTACACCCAAAAAGGCAATTATCCGGTTACACAGGTTGCCCTTCTGCTGAGCAGTTTGCAGCAATGTGGGGTTTCCAGCTGAATGATGACATCACTCTCTCCATAACCAGTAGTTATTGTGTGGAACACTTAAATACTCTTGGCCACCAGATTCTTCACTTGAAAAGGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATTCAGTACATCAGCTTATATATGGCCAAGAACAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCAGACAGAATCAATTTGGCAGTGGACAAGTCCGGTTCAAAGTACCAGTCAGATCCCGGTCTGCAAGAAACTCACTTGTCCTGATGATTCCAATTTATCGAATGCTGAATGTTTGGCAGTCCTAAACTTCGAATTAGGATTACTCGTAGATGACAATGATGTTGATGATGATAATAATCATGATGATGTACCGTTGTCTTGTGCCTCCTCCACCATGGACGAATCAAGAGCAGATGCGTCTATTCACATCAATGGGTCTTCATCTTCGTCGACCTCTTCGTCGGTATTCTGTACAATTCCAAGCAATGTTATTTCCTGCGGCCTCAAGGGTGAAGAACATTTGGAAGCCAGTGCAAAGGCCATGATTAGGTACAAAGAGAAGAAGCGATCCCGTTCGCATGCAAAAACAATTCGATATCCAAATAGGAAAGCAAGAGCTGATGTACGTAAGCGTGTGAATGGCCGGTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

342

Amino Acids

38.06

Weight (kDa)

6.45

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	304 - 342	4.3e-11	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	824
AciI	CCGC	2 cut(s)	199, 873
AclWI	GGATC	2 cut(s)	601, 936
AcoI	YGGCCR	3 cut(s)	400, 493, 1015
AcsI	RAATTY	2 cut(s)	9, 469
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	8 cut(s)	45, 133, 477, 598, 744, 847, 926, 999
AfiI	CCNNNNNNNGG	1 cut(s)	921
AgsI	TTSAA	3 cut(s)	421, 468, 593
AluBI	AGCT	5 cut(s)	104, 337, 433, 484, 992
AluI	AGCT	5 cut(s)	104, 337, 433, 484, 992
AlwI	GGATC	2 cut(s)	601, 936
AoxI	GGCC	6 cut(s)	35, 400, 493, 874, 912, 1015
ApeKI	GCWGC	2 cut(s)	62, 317
ApoI	RAATTY	2 cut(s)	9, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	188, 506, 896
AsuII	TTCGAA	1 cut(s)	684
BalI	TGGCCA	2 cut(s)	402, 495
BanI	GGYRCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	74, 329
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	611
BfaI	CTAG	2 cut(s)	182, 249
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	3 cut(s)	63, 318, 874
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	64, 319, 875
Bme1390I	CCNGG	1 cut(s)	611
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	5 cut(s)	38, 49, 76, 210, 778
BpiI	GAAGAC	1 cut(s)	804
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	1001
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	768
BsaWI	WCCGGW	2 cut(s)	281, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	921
Bse118I	RCCGGY	2 cut(s)	120, 1017
Bse1I	ACTGG	5 cut(s)	38, 366, 450, 600, 903
Bse3DI	GCAATG	2 cut(s)	327, 865
Bse8I	GATNNNNATC	1 cut(s)	729
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	768
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	921
BseMI	GCAATG	2 cut(s)	327, 865
BseMII	CTCAG	2 cut(s)	114, 297
BseNI	ACTGG	5 cut(s)	38, 366, 450, 600, 903
BseRI	GAGGAG	1 cut(s)	751
BseXI	GCAGC	2 cut(s)	74, 329
BshFI	GGCC	6 cut(s)	37, 402, 495, 876, 914, 1017
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	462
BsiSI	CCGG	5 cut(s)	121, 282, 587, 611, 1018
BslI	CCNNNNNNNGG	1 cut(s)	921
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	6 cut(s)	37, 402, 495, 876, 914, 1017
Bsp119I	TTCGAA	1 cut(s)	684
Bsp1407I	TGTACA	1 cut(s)	845
Bsp143I	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	2 cut(s)	199, 873
BspANI	GGCC	6 cut(s)	37, 402, 495, 876, 914, 1017
BspCNI	CTCAG	2 cut(s)	113, 298
BspDI	ATCGAT	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	601, 936
BspT104I	TTCGAA	1 cut(s)	684
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	327, 865
BsrFI	RCCGGY	2 cut(s)	120, 1017
BsrGI	TGTACA	1 cut(s)	845
BsrI	ACTGG	5 cut(s)	38, 366, 450, 600, 903
BssAI	RCCGGY	2 cut(s)	120, 1017
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
BssT1I	CCWWGG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	50, 131, 136, 541, 747
Bst6I	CTCTTC	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	1001
BstBI	TTCGAA	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	236, 954
BstDEI	CTNAG	2 cut(s)	100, 306
BstDSI	CCRYGG	1 cut(s)	768
BstKTI	GATC	6 cut(s)	187, 196, 246, 442, 609, 944
BstMBI	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
BstNSI	RCATGY	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	609
BstSNI	TACGTA	1 cut(s)	1001
BstV1I	GCAGC	2 cut(s)	74, 329
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	243, 606
BstYI	RGATCY	2 cut(s)	243, 606
Bsu15I	ATCGAT	1 cut(s)	462
BsuRI	GGCC	6 cut(s)	37, 402, 495, 876, 914, 1017
BsuTUI	ATCGAT	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	6 cut(s)	45, 46, 182, 435, 581, 910
Cac8I	GCNNGC	2 cut(s)	236, 954
CciI	TCATGA	1 cut(s)	733
Cfr10I	RCCGGY	2 cut(s)	120, 1017
ClaI	ATCGAT	1 cut(s)	462
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	8 cut(s)	44, 132, 476, 597, 743, 846, 925, 998
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	8 cut(s)	81, 150, 211, 239, 734, 769, 916, 953
CviQI	GTAC	8 cut(s)	44, 132, 476, 597, 743, 846, 925, 998
DdeI	CTNAG	2 cut(s)	100, 306
DpnI	GATC	6 cut(s)	186, 195, 245, 441, 608, 943
DpnII	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
DrdI	GACNNNNNNGTC	1 cut(s)	832
DseDI	GACNNNNNNGTC	1 cut(s)	832
EaeI	YGGCCR	3 cut(s)	400, 493, 1015
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Eco105I	TACGTA	1 cut(s)	1001
Eco130I	CCWWGG	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	971
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	8 cut(s)	84, 153, 214, 242, 737, 772, 919, 956
FatI	CATG	8 cut(s)	80, 149, 210, 238, 733, 768, 915, 952
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	3 cut(s)	63, 318, 874
Fsp4HI	GCNGC	3 cut(s)	63, 318, 874
FspBI	CTAG	2 cut(s)	182, 249
GluI	GCNGC	3 cut(s)	63, 318, 874
HaeIII	GGCC	6 cut(s)	37, 402, 495, 876, 914, 1017
HapII	CCGG	5 cut(s)	121, 282, 587, 611, 1018
HgaI	GACGC	1 cut(s)	780
Hin1II	CATG	8 cut(s)	84, 153, 214, 242, 737, 772, 919, 956
HincII	GTYRAC	2 cut(s)	118, 825
HindII	GTYRAC	2 cut(s)	118, 825
HinfI	GANTC	7 cut(s)	146, 409, 464, 508, 563, 641, 776
HpaII	CCGG	5 cut(s)	121, 282, 587, 611, 1018
HphI	GGTGA	3 cut(s)	188, 506, 896
Hpy166II	GTNNAC	4 cut(s)	46, 118, 579, 825
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	6 cut(s)	182, 255, 443, 635, 734, 780
Hpy8I	GTNNAC	4 cut(s)	46, 118, 579, 825
Hpy99I	CGWCG	2 cut(s)	826, 838
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	5 cut(s)	50, 131, 136, 541, 747
HpyCH4IV	ACGT	1 cut(s)	1000
HpyCH4V	TGCA	7 cut(s)	62, 153, 317, 556, 618, 908, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
HpyF3I	CTNAG	2 cut(s)	100, 306
HpySE526I	ACGT	1 cut(s)	1000
Hsp92II	CATG	8 cut(s)	84, 153, 214, 242, 737, 772, 919, 956
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
Lsp1109I	GCAGC	2 cut(s)	74, 329
LweI	GCATC	5 cut(s)	38, 49, 76, 210, 778
MaeI	CTAG	2 cut(s)	182, 249
MaeII	ACGT	1 cut(s)	1000
MaeIII	GTNAC	2 cut(s)	224, 284
MalI	GATC	6 cut(s)	186, 195, 245, 441, 608, 943
MboI	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
MboII	GAAGA	7 cut(s)	404, 513, 804, 810, 822, 899, 946
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	2 cut(s)	243, 606
MlsI	TGGCCA	2 cut(s)	402, 495
MluCI	AATT	9 cut(s)	9, 111, 275, 469, 567, 646, 686, 849, 963
MluNI	TGGCCA	2 cut(s)	402, 495
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	4 cut(s)	769, 772, 838, 887
Mox20I	TGGCCA	2 cut(s)	402, 495
MscI	TGGCCA	2 cut(s)	402, 495
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	3 cut(s)	222, 738, 804
Msp20I	TGGCCA	2 cut(s)	402, 495
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	5 cut(s)	121, 282, 587, 611, 1018
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
NciI	CCSGG	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	768
NdeII	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
NlaIII	CATG	8 cut(s)	84, 153, 214, 242, 737, 772, 919, 956
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	956
NspV	TTCGAA	1 cut(s)	684
PaeI	GCATGC	1 cut(s)	956
PagI	TCATGA	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	830
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	6 cut(s)	146, 409, 464, 563, 641, 776
PkrI	GCNGC	3 cut(s)	64, 319, 875
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
Ppu21I	YACGTR	1 cut(s)	1001
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	243, 606
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	8 cut(s)	45, 133, 477, 598, 744, 847, 926, 999
RsaNI	GTAC	8 cut(s)	44, 132, 476, 597, 743, 846, 925, 998
RseI	CAYNNNNRTG	3 cut(s)	222, 738, 804
SalI	GTCGAC	1 cut(s)	823
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	3 cut(s)	63, 318, 874
Sau3AI	GATC	6 cut(s)	184, 193, 243, 439, 606, 941
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	611
SfaNI	GCATC	5 cut(s)	38, 49, 76, 210, 778
SfuI	TTCGAA	1 cut(s)	684
SmiMI	CAYNNNNRTG	3 cut(s)	222, 738, 804
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SnaBI	TACGTA	1 cut(s)	1001
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	9 cut(s)	9, 111, 275, 469, 567, 646, 686, 849, 963
SsiI	CCGC	2 cut(s)	199, 873
SspMI	CTAG	2 cut(s)	182, 249
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	5 cut(s)	50, 131, 136, 541, 747
TaiI	ACGT	1 cut(s)	1003
TaqI	TCGA	5 cut(s)	462, 653, 684, 824, 967
TasI	AATT	9 cut(s)	9, 111, 275, 469, 567, 646, 686, 849, 963
TatI	WGTACW	2 cut(s)	475, 845
TauI	GCSGC	1 cut(s)	876
TfiI	GAWTC	6 cut(s)	146, 409, 464, 563, 641, 776
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	6 cut(s)	45, 53, 182, 442, 581, 910
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	62, 317
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	69, 138, 804
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	6 cut(s)	45, 53, 182, 442, 581, 910
XapI	RAATTY	2 cut(s)	9, 469
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	1 cut(s)	956
XmiI	GTMKAC	1 cut(s)	824
XspI	CTAG	2 cut(s)	182, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.