Rorug04G0274900

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001104
Physical Location & Seq
Forward (+)
44732523 .. 44736503
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0274900.1

Sequence Viewer

Length: 1230 bp
ATGTCTGGTCACGGCGGAGTTTCGATCGGTCGGGCTCGGGGCGAGAACCGGTTCTACAACCCGCCCCCGATTCGAGAGCGACAACACCAGCAACAGCTTCAGCGGCAGCAGAAGCAGAAGCTTGAACAGGAGAAGCAGCATCATCAGAGGCGGCCGGTGTCGGTGTCGGTGGTGGAGTCCGACGACTGTGCTACGTCGCATAGTTCCGGGTCGGGTCGGGAAGCGCTCAGCGAGGCCGCGAATTTAGATCGGTTCCTTGAGTTCACAACGCCCCTGGCTCGAGCTCATTTTTTGCCCAAGACGAGTAGCAGGGGATGGAGGACTCATGAGCCGGAGTTACATCCCTATTTTGTGCTTGGAGATTTATGGGAATCTTTCAAGGAGTGGAGTGCGTACGGCGCGGGTGTCCCTCTTTTGTTAAATGGGAGTGACTCTGTCATACAGTACTATGTACCTTACTTGTCTGCCATTCAGCTCTATGTAGACCCATCAAAGCCTCCCACAAGGATAAGGAAGCCTGGTGATGACAGTGATGCAGAGTCATCGAGGGAGACAAGTAGTGATGGCAGCAGTGATTATGGAGCAGAAAGAGGAATCAGTGGTGTTGTTGATGATGCTTGGAGTCGGCAGAATATTGCTGATGTAAATGGCCATGGTTGGAATAGAGTCTTACCAAGAGATAAACCCTTAACTGGTTCCTCAAGTGATGAAAGTGAGATTTGCAATCCTCCAGGTCAGCTTGTATTTCAATATTTGGAGCACGATCAACCGTTTGGCCGTGAACCTTTGGCTGATAAGATTCAAGTTCTTGCATCCCAATTTCCAGAGCTGAGGACTTACAGGAGCTCGGACTTATCACCTTCTAGTTGGATCTCTGTAGCATGGTATCCCATATATCGGATACCTACAGGTCCAACATTACAGAGCCTGGATGCTTGCTTCTTGACCTTTCATTCCCTTTCGACTCCCTTAAAGGGTACAAGCACTGATAGGCTTCGTCCCAGCGGTGCACGACCTAGAGAGGTTCAAAATGCCGACTTCAAACTCTCGTTGCCAACTTTTGGATTGGCTTCCTACAAGTTCAAGGGTTCCTTTTGGAACCCTAATGGAGTTTACGAATCTCAAAAGGCTAATTCTCTATTGCGAGCAGCTGAAAACTGGCTCAGGCTATTGCAAGTTCATCATCCTGATTTCAACTTCTTTGTGTCACACAATACACCAAGGAGGTGA

Protein Analysis

409

Amino Acids

46.08

Weight (kDa)

7.26

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 80 - 401 1.7e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1061
AccI GTMKAC 1 cut(s) 483
AccII CGCG 2 cut(s) 239, 401
AciI CCGC 7 cut(s) 15, 62, 103, 151, 237, 401, 1005
AclWI GGATC 1 cut(s) 878
AcoI YGGCCR 3 cut(s) 152, 649, 775
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 4 cut(s) 395, 446, 453, 979
AfeI AGCGCT 1 cut(s) 225
AfiI CCNNNNNNNGG 4 cut(s) 692, 897, 974, 1061
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 8 cut(s) 125, 379, 749, 803, 1028, 1042, 1084, 1195
AjnI CCWGG 4 cut(s) 273, 517, 730, 927
AluBI AGCT 8 cut(s) 97, 121, 284, 475, 739, 829, 846, 1151
AluI AGCT 8 cut(s) 97, 121, 284, 475, 739, 829, 846, 1151
Alw21I GWGCWC 4 cut(s) 286, 762, 848, 1012
Alw26I GTCTC 1 cut(s) 545
Alw44I GTGCAC 1 cut(s) 1008
AlwI GGATC 1 cut(s) 878
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 2 cut(s) 36, 279
Aor51HI AGCGCT 1 cut(s) 225
AoxI GGCC 4 cut(s) 152, 234, 649, 775
ApaLI GTGCAC 1 cut(s) 1008
ApeKI GCWGC 4 cut(s) 106, 136, 567, 1148
ApoI RAATTY 1 cut(s) 241
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 226, 401
AspS9I GGNCC 1 cut(s) 911
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 533, 849
AvaI CYCGRG 2 cut(s) 36, 279
AvaII GGWCC 1 cut(s) 911
BaeGI GKGCMC 1 cut(s) 1012
BalI TGGCCA 1 cut(s) 651
BanII GRGCYC 3 cut(s) 37, 286, 848
Bbv12I GWGCWC 4 cut(s) 286, 762, 848, 1012
BbvCI CCTCAGC 1 cut(s) 830
BbvI GCAGC 4 cut(s) 118, 148, 579, 1160
BccI CCATC 3 cut(s) 309, 496, 557
BceAI ACGGC 3 cut(s) 28, 412, 762
BcgI CGANNNNNNTGC 4 cut(s) 170, 204, 525, 559
BciT130I CCWGG 4 cut(s) 275, 519, 732, 929
BciVI GTATCC 2 cut(s) 894, 897
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 2 cut(s) 864, 1017
BfmI CTRYAG 2 cut(s) 876, 906
BfoI RGCGCY 1 cut(s) 227
BfuI GTATCC 2 cut(s) 894, 897
BisI GCNGC 7 cut(s) 104, 107, 137, 152, 237, 568, 1149
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 7 cut(s) 105, 108, 138, 153, 238, 569, 1150
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 5 cut(s) 208, 275, 519, 732, 929
Bme18I GGWCC 1 cut(s) 911
BmeT110I CYCGRG 2 cut(s) 36, 279
BmgT120I GGNCC 1 cut(s) 911
BmiI GGNNCC 4 cut(s) 254, 697, 1090, 1100
BmrFI CCNGG 5 cut(s) 208, 275, 519, 732, 929
BmsI GCATC 5 cut(s) 148, 523, 604, 821, 922
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 2 cut(s) 830, 1163
Bpu1102I GCTNAGC 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 278, 685
BpuMI CCSGG 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 273, 652, 1220
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 4 cut(s) 692, 897, 974, 1061
Bse118I RCCGGY 2 cut(s) 48, 154
Bse1I ACTGG 2 cut(s) 697, 1163
BseBI CCWGG 4 cut(s) 275, 519, 732, 929
BseDI CCNNGG 3 cut(s) 273, 652, 1220
BseGI GGATG 5 cut(s) 320, 340, 812, 937, 1183
BseLI CCNNNNNNNGG 4 cut(s) 692, 897, 974, 1061
BseMII CTCAG 3 cut(s) 241, 821, 1177
BseNI ACTGG 2 cut(s) 697, 1163
BseSI GKGCMC 1 cut(s) 1012
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 4 cut(s) 118, 148, 579, 1160
BseYI CCCAGC 1 cut(s) 1001
Bsh1236I CGCG 2 cut(s) 239, 401
Bsh1285I CGRYCG 3 cut(s) 27, 31, 155
BshFI GGCC 4 cut(s) 154, 236, 651, 777
BshTI ACCGGT 1 cut(s) 48
BsiEI CGRYCG 3 cut(s) 27, 31, 155
BsiHKAI GWGCWC 4 cut(s) 286, 762, 848, 1012
BsiHKCI CYCGRG 2 cut(s) 36, 279
BsiSI CCGG 4 cut(s) 49, 155, 207, 332
BsiWI CGTACG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 392, 984
BslI CCNNNNNNNGG 4 cut(s) 692, 897, 974, 1061
BsmAI GTCTC 1 cut(s) 545
BsmFI GGGAC 2 cut(s) 392, 984
BsnI GGCC 4 cut(s) 154, 236, 651, 777
BsoBI CYCGRG 2 cut(s) 36, 279
Bsp1286I GDGCHC 5 cut(s) 37, 286, 762, 848, 1012
Bsp143I GATC 4 cut(s) 24, 247, 763, 870
Bsp1720I GCTNAGC 1 cut(s) 227
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 7 cut(s) 15, 62, 103, 151, 237, 401, 1005
BspANI GGCC 4 cut(s) 154, 236, 651, 777
BspCNI CTCAG 3 cut(s) 240, 822, 1176
BspFNI CGCG 2 cut(s) 239, 401
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 4 cut(s) 254, 697, 1090, 1100
BspPI GGATC 1 cut(s) 878
BsrFI RCCGGY 2 cut(s) 48, 154
BsrI ACTGG 2 cut(s) 697, 1163
BssAI RCCGGY 2 cut(s) 48, 154
BssECI CCNNGG 3 cut(s) 273, 652, 1220
BssMI GATC 4 cut(s) 24, 247, 763, 870
BssT1I CCWWGG 2 cut(s) 652, 1220
Bst2UI CCWGG 4 cut(s) 275, 519, 732, 929
Bst4CI ACNGT 4 cut(s) 188, 444, 530, 771
BstC8I GCNNGC 2 cut(s) 937, 1146
BstDEI CTNAG 3 cut(s) 227, 830, 1163
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 5 cut(s) 320, 340, 812, 937, 1183
BstFNI CGCG 2 cut(s) 239, 401
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 2 cut(s) 226, 401
BstKTI GATC 4 cut(s) 27, 250, 766, 873
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 4 cut(s) 24, 247, 763, 870
BstMCI CGRYCG 3 cut(s) 27, 31, 155
BstMWI GCNNNNNNNGC 3 cut(s) 103, 112, 398
BstNI CCWGG 4 cut(s) 275, 519, 732, 929
BstSCI CCNGG 5 cut(s) 206, 273, 517, 730, 927
BstSFI CTRYAG 2 cut(s) 876, 906
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 2 cut(s) 239, 401
BstV1I GCAGC 4 cut(s) 118, 148, 579, 1160
BstX2I RGATCY 1 cut(s) 870
BstYI RGATCY 1 cut(s) 870
BstZI CGGCCG 1 cut(s) 152
BsuI GTATCC 2 cut(s) 894, 897
BsuRI GGCC 4 cut(s) 154, 236, 651, 777
BtgI CCRYGG 1 cut(s) 652
BtsCI GGATG 5 cut(s) 320, 340, 812, 937, 1183
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 4 cut(s) 535, 577, 604, 984
Cac8I GCNNGC 2 cut(s) 937, 1146
CaiI CAGNNNCTG 1 cut(s) 928
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 226, 401
Cfr10I RCCGGY 2 cut(s) 48, 154
Cfr13I GGNCC 1 cut(s) 911
Csp6I GTAC 4 cut(s) 394, 445, 452, 978
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 3 cut(s) 326, 653, 882
CviQI GTAC 4 cut(s) 394, 445, 452, 978
DdeI CTNAG 3 cut(s) 227, 830, 1163
DpnI GATC 4 cut(s) 26, 249, 765, 872
DpnII GATC 4 cut(s) 24, 247, 763, 870
EaeI YGGCCR 3 cut(s) 152, 649, 775
EagI CGGCCG 1 cut(s) 152
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 2 cut(s) 284, 846
EclXI CGGCCG 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 652, 1220
Eco24I GRGCYC 3 cut(s) 37, 286, 848
Eco47I GGWCC 1 cut(s) 911
Eco47III AGCGCT 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 152
Eco53kI GAGCTC 2 cut(s) 284, 846
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 36, 279
EcoICRI GAGCTC 2 cut(s) 284, 846
EcoRII CCWGG 4 cut(s) 273, 517, 730, 927
EcoT14I CCWWGG 2 cut(s) 652, 1220
EcoT38I GRGCYC 3 cut(s) 37, 286, 848
ErhI CCWWGG 2 cut(s) 652, 1220
FaeI CATG 3 cut(s) 329, 656, 885
FalI AAGNNNNNCTT 2 cut(s) 1076, 1108
FaqI GGGAC 2 cut(s) 392, 984
FatI CATG 3 cut(s) 325, 652, 881
FauI CCCGC 2 cut(s) 69, 394
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 7 cut(s) 104, 107, 137, 152, 237, 568, 1149
FokI GGATG 5 cut(s) 327, 327, 799, 944, 1170
FriOI GRGCYC 3 cut(s) 37, 286, 848
Fsp4HI GCNGC 7 cut(s) 104, 107, 137, 152, 237, 568, 1149
FspBI CTAG 2 cut(s) 864, 1017
GlaI GCGC 2 cut(s) 225, 400
GluI GCNGC 7 cut(s) 104, 107, 137, 152, 237, 568, 1149
GsaI CCCAGC 1 cut(s) 1005
GsuI CTGGAG 1 cut(s) 714
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 4 cut(s) 154, 236, 651, 777
HapII CCGG 4 cut(s) 49, 155, 207, 332
HhaI GCGC 2 cut(s) 226, 401
Hin1II CATG 3 cut(s) 329, 656, 885
Hin6I GCGC 2 cut(s) 224, 399
HinP1I GCGC 2 cut(s) 224, 399
HindIII AAGCTT 1 cut(s) 119
HpaII CCGG 4 cut(s) 49, 155, 207, 332
HphI GGTGA 2 cut(s) 533, 849
Hpy166II GTNNAC 5 cut(s) 264, 484, 782, 1010, 1114
Hpy188I TCNGA 4 cut(s) 147, 181, 850, 900
Hpy188III TCNNGA 6 cut(s) 74, 218, 326, 824, 943, 1187
Hpy8I GTNNAC 5 cut(s) 264, 484, 782, 1010, 1114
Hpy99I CGWCG 2 cut(s) 185, 199
HpyAV CCTTC 1 cut(s) 870
HpyCH4III ACNGT 4 cut(s) 188, 444, 530, 771
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 5 cut(s) 536, 723, 812, 1010, 1174
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 112, 398
HpyF3I CTNAG 3 cut(s) 227, 830, 1163
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 3 cut(s) 329, 656, 885
HspAI GCGC 2 cut(s) 224, 399
Kzo9I GATC 4 cut(s) 24, 247, 763, 870
LmnI GCTCC 3 cut(s) 581, 757, 843
Lsp1109I GCAGC 4 cut(s) 118, 148, 579, 1160
LweI GCATC 5 cut(s) 148, 523, 604, 821, 922
MaeI CTAG 2 cut(s) 864, 1017
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 4 cut(s) 8, 336, 428, 1206
MalI GATC 4 cut(s) 26, 249, 765, 872
MboI GATC 4 cut(s) 24, 247, 763, 870
MflI RGATCY 1 cut(s) 870
MhlI GDGCHC 5 cut(s) 37, 286, 762, 848, 1012
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 3 cut(s) 241, 818, 1132
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 7 cut(s) 185, 316, 425, 548, 631, 675, 958
MmeI TCCRAC 4 cut(s) 204, 638, 848, 938
Mox20I TGGCCA 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 651
MseI TTAA 3 cut(s) 419, 689, 971
Msp20I TGGCCA 1 cut(s) 651
MspA1I CMGCKG 3 cut(s) 103, 1005, 1151
MspI CCGG 4 cut(s) 49, 155, 207, 332
MspR9I CCNGG 5 cut(s) 208, 275, 519, 732, 929
MvaI CCWGG 4 cut(s) 275, 519, 732, 929
MvnI CGCG 2 cut(s) 239, 401
MwoI GCNNNNNNNGC 3 cut(s) 103, 112, 398
NciI CCSGG 1 cut(s) 208
NcoI CCATGG 1 cut(s) 652
NdeII GATC 4 cut(s) 24, 247, 763, 870
NlaIII CATG 3 cut(s) 329, 656, 885
NlaIV GGNNCC 4 cut(s) 254, 697, 1090, 1100
NmuCI GTSAC 3 cut(s) 8, 428, 1206
PaeR7I CTCGAG 1 cut(s) 279
PagI TCATGA 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 5 cut(s) 70, 371, 594, 799, 1118
Pfl23II CGTACG 1 cut(s) 393
PflFI GACNNNGTC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 1061
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 7 cut(s) 105, 108, 138, 153, 238, 569, 1150
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 7 cut(s) 184, 316, 425, 547, 630, 674, 958
PpsI GAGTC 7 cut(s) 184, 316, 425, 547, 630, 674, 958
Psp124BI GAGCTC 2 cut(s) 286, 848
Psp6I CCWGG 4 cut(s) 273, 517, 730, 927
PspFI CCCAGC 1 cut(s) 1001
PspGI CCWGG 4 cut(s) 273, 517, 730, 927
PspLI CGTACG 1 cut(s) 393
PspN4I GGNNCC 4 cut(s) 254, 697, 1090, 1100
PspPI GGNCC 1 cut(s) 911
PspXI VCTCGAGB 1 cut(s) 279
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 1 cut(s) 870
PsyI GACNNNGTC 1 cut(s) 434
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 1151
RsaI GTAC 4 cut(s) 395, 446, 453, 979
RsaNI GTAC 4 cut(s) 394, 445, 452, 978
SacI GAGCTC 2 cut(s) 286, 848
SaqAI TTAA 3 cut(s) 419, 689, 971
SatI GCNGC 7 cut(s) 104, 107, 137, 152, 237, 568, 1149
Sau3AI GATC 4 cut(s) 24, 247, 763, 870
Sau96I GGNCC 1 cut(s) 911
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 7 cut(s) 185, 316, 425, 548, 631, 675, 958
ScrFI CCNGG 5 cut(s) 208, 275, 519, 732, 929
SduI GDGCHC 5 cut(s) 37, 286, 762, 848, 1012
SfaNI GCATC 5 cut(s) 148, 523, 604, 821, 922
SfcI CTRYAG 2 cut(s) 876, 906
Sfr274I CTCGAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 911
SlaI CTCGAG 1 cut(s) 279
SmlI CTYRAG 3 cut(s) 257, 279, 700
SmoI CTYRAG 3 cut(s) 257, 279, 700
Sse9I AATT 3 cut(s) 241, 818, 1132
SsiI CCGC 7 cut(s) 15, 62, 103, 151, 237, 401, 1005
SspI AATATT 2 cut(s) 634, 752
SspMI CTAG 2 cut(s) 864, 1017
SstI GAGCTC 2 cut(s) 286, 848
StyD4I CCNGG 5 cut(s) 206, 273, 517, 730, 927
StyI CCWWGG 2 cut(s) 652, 1220
TaaI ACNGT 4 cut(s) 188, 444, 530, 771
TaiI ACGT 1 cut(s) 197
TaqI TCGA 5 cut(s) 23, 73, 280, 545, 962
TaqII GACCGA 1 cut(s) 17
TasI AATT 3 cut(s) 241, 818, 1132
TatI WGTACW 1 cut(s) 444
TauI GCSGC 3 cut(s) 106, 154, 239
TfiI GAWTC 5 cut(s) 70, 371, 594, 799, 1118
Tru1I TTAA 3 cut(s) 419, 689, 971
Tru9I TTAA 3 cut(s) 419, 689, 971
TscAI CASTG 4 cut(s) 535, 577, 604, 991
TseFI GTSAC 3 cut(s) 8, 428, 1206
TseI GCWGC 4 cut(s) 106, 136, 567, 1148
Tsp45I GTSAC 3 cut(s) 8, 428, 1206
TspDTI ATGAA 3 cut(s) 723, 941, 1169
TspRI CASTG 4 cut(s) 535, 577, 604, 991
Tth111I GACNNNGTC 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 1061
VneI GTGCAC 1 cut(s) 1008
VpaK11BI GGWCC 1 cut(s) 911
XapI RAATTY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 864, 1017
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.