Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

1952127 .. 1953259

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGAAATTTTGTGAGTTCTGCTTGGCATTGAGGCCGGTTGTGTACTGCAAAGCTGATGCAGCACTTCTTTGCCTCTCCTGCGATGCTAAGGTCCATTCGGCAAACACACTTTTCAACCGGCATTTGCGCAGTATCTTGTGTGATTTGTGTAGACATTTCCCGGCTTGTATTCAGTGTTTGGATCACAAGATGTTTATGTGCCGTGCCTGTGACCGTGCTTTGCACACGATCGCCTCCCAACATCCAAAAAGGGCAATCGGCAGTTACACAGGTTCCCCGTCTGCTGAGGACTTTGCAGCATTGTGGGGTTTCAAATTGAACGAGACAGACAATTGTAGTGCACATTTGGATTTGAATGGGACTCTGTCCAATTCTTGTGGCTCTTCGTGCGACTCAAGTGCGGTAAACTTGGATAGTCTAGAGCAGTCTTGCTCTGGAGCTGAAGGCCTTCTGGCAGGAAATTCTCTCACCCGGATTTCAGGTGCTGAATCTGAAGCGGGATCGAGCAGTCAACAATACAAGATATCTCCTGAAGGTCAAGAGAACAATTTCATTCTGCACCAGATTCTAGATTTGAAAAGGATTCAGTTTTCTGAGGGAAATGGCCCTTCGCTGCTGATACCCGGTAGAGAGCAAAGTGACCTATCTTCCTCGGTACTTCAGACATCAAAGAGGCTCGATGTTCATCTTGATCGAGCGTTTTCAACATTCTCAGAATGCCAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

244

Amino Acids

26.48

Weight (kDa)

5.9

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	154
AciI	CCGC	2 cut(s)	404, 500
AclWI	GGATC	2 cut(s)	192, 511
AcsI	RAATTY	2 cut(s)	8, 463
AcuI	CTGAAG	4 cut(s)	465, 516, 555, 647
AfaI	GTAC	2 cut(s)	47, 660
AgsI	TTSAA	6 cut(s)	118, 316, 322, 358, 580, 708
AluBI	AGCT	2 cut(s)	56, 443
AluI	AGCT	2 cut(s)	56, 443
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	192, 511
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	35, 448, 607
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	62, 299, 616
ApoI	RAATTY	2 cut(s)	8, 463
Asp700I	GAANNNNTTC	2 cut(s)	450, 551
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	94, 608
AsuC2I	CCSGG	3 cut(s)	164, 475, 627
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	74, 311, 603
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BcnI	CCSGG	3 cut(s)	164, 475, 627
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	422, 572
BisI	GCNGC	3 cut(s)	63, 300, 617
BlsI	GCNGC	3 cut(s)	64, 301, 618
Bme1390I	CCNGG	3 cut(s)	164, 475, 627
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	94, 608
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	164, 475, 627
BmsI	GCATC	2 cut(s)	49, 76
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	2 cut(s)	90, 288
BpuEI	CTTGAG	1 cut(s)	382
BpuMI	CCSGG	3 cut(s)	164, 475, 627
BsaBI	GATNNNNATC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	654
Bse118I	RCCGGY	2 cut(s)	37, 120
Bse8I	GATNNNNATC	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	279, 588, 729
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	74, 311, 603
BsgI	GTGCAG	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	37, 450, 609
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	5 cut(s)	38, 121, 164, 475, 627
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	37, 450, 609
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	184, 231, 503, 694
BspACI	CCGC	2 cut(s)	404, 500
BspANI	GGCC	3 cut(s)	37, 450, 609
BspCNI	CTCAG	3 cut(s)	280, 589, 728
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	192, 511
BspQI	GCTCTTC	1 cut(s)	391
BsrFI	RCCGGY	2 cut(s)	37, 120
BssAI	RCCGGY	2 cut(s)	37, 120
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	4 cut(s)	184, 231, 503, 694
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	4 cut(s)	90, 288, 597, 715
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	4 cut(s)	187, 234, 506, 697
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	184, 231, 503, 694
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 390
BstSCI	CCNGG	3 cut(s)	162, 473, 625
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	3 cut(s)	74, 311, 603
BsuRI	GGCC	3 cut(s)	37, 450, 609
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	2 cut(s)	37, 120
Cfr13I	GGNCC	2 cut(s)	94, 608
Csp6I	GTAC	2 cut(s)	46, 659
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviJI	RGCY	8 cut(s)	37, 56, 167, 384, 443, 450, 609, 679
CviKI_1	RGCY	8 cut(s)	37, 56, 167, 384, 443, 450, 609, 679
CviQI	GTAC	2 cut(s)	46, 659
DdeI	CTNAG	4 cut(s)	90, 288, 597, 715
DpnI	GATC	4 cut(s)	186, 233, 505, 696
DpnII	GATC	4 cut(s)	184, 231, 503, 694
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco147I	AGGCCT	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	4 cut(s)	465, 516, 555, 647
EcoRV	GATATC	1 cut(s)	528
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	1 cut(s)	376
FauI	CCCGC	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	63, 300, 617
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	63, 300, 617
FspBI	CTAG	2 cut(s)	422, 572
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	3 cut(s)	63, 300, 617
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	37, 450, 609
HapII	CCGG	5 cut(s)	38, 121, 164, 475, 627
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	515
HindII	GTYRAC	1 cut(s)	515
HinfI	GANTC	5 cut(s)	364, 395, 491, 568, 586
HpaII	CCGG	5 cut(s)	38, 121, 164, 475, 627
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	5 cut(s)	46, 155, 344, 409, 515
Hpy188I	TCNGA	4 cut(s)	496, 598, 666, 718
Hpy188III	TCNNGA	6 cut(s)	422, 438, 533, 542, 572, 692
Hpy8I	GTNNAC	5 cut(s)	46, 155, 344, 409, 515
HpyAV	CCTTC	4 cut(s)	440, 461, 530, 621
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	6 cut(s)	51, 62, 226, 299, 344, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 390
HpyF3I	CTNAG	4 cut(s)	90, 288, 597, 715
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	184, 231, 503, 694
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	3 cut(s)	74, 311, 603
LweI	GCATC	2 cut(s)	49, 76
MaeI	CTAG	2 cut(s)	422, 572
MaeIII	GTNAC	3 cut(s)	212, 266, 641
MalI	GATC	4 cut(s)	186, 233, 505, 696
MboI	GATC	4 cut(s)	184, 231, 503, 694
MboII	GAAGA	2 cut(s)	378, 642
MfeI	CAATTG	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	6 cut(s)	8, 317, 334, 373, 463, 550
MlyI	GAGTC	2 cut(s)	358, 389
MnlI	CCTC	7 cut(s)	27, 86, 247, 283, 592, 664, 669
MroXI	GAANNNNTTC	2 cut(s)	450, 551
MseI	TTAA	1 cut(s)	730
MspI	CCGG	5 cut(s)	38, 121, 164, 475, 627
MspR9I	CCNGG	3 cut(s)	164, 475, 627
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	725
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 390
NciI	CCSGG	3 cut(s)	164, 475, 627
NdeII	GATC	4 cut(s)	184, 231, 503, 694
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	212, 641
NsbI	TGCGCA	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	725
PdmI	GAANNNNTTC	2 cut(s)	450, 551
PfeI	GAWTC	3 cut(s)	491, 568, 586
PflFI	GACNNNGTC	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	64, 301, 618
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	2 cut(s)	358, 389
PpsI	GAGTC	2 cut(s)	358, 389
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	94, 608
PstNI	CAGNNNCTG	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	367
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	2 cut(s)	47, 660
RsaNI	GTAC	2 cut(s)	46, 659
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	730
SatI	GCNGC	3 cut(s)	63, 300, 617
Sau3AI	GATC	4 cut(s)	184, 231, 503, 694
Sau96I	GGNCC	2 cut(s)	94, 608
SchI	GAGTC	2 cut(s)	358, 389
ScrFI	CCNGG	3 cut(s)	164, 475, 627
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	7 cut(s)	58, 96, 277, 445, 487, 541, 648
SfaNI	GCATC	2 cut(s)	49, 76
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	6 cut(s)	8, 317, 334, 373, 463, 550
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	2 cut(s)	404, 500
SspMI	CTAG	2 cut(s)	422, 572
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	162, 473, 625
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	506, 681, 697
TasI	AATT	6 cut(s)	8, 317, 334, 373, 463, 550
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	3 cut(s)	491, 568, 586
Tru1I	TTAA	1 cut(s)	730
Tru9I	TTAA	1 cut(s)	730
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	2 cut(s)	212, 641
TseI	GCWGC	3 cut(s)	62, 299, 616
Tsp45I	GTSAC	2 cut(s)	212, 641
TspDTI	ATGAA	2 cut(s)	544, 677
TspRI	CASTG	1 cut(s)	182
Tth111I	GACNNNGTC	1 cut(s)	367
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	2 cut(s)	8, 463
XbaI	TCTAGA	2 cut(s)	421, 571
XmiI	GTMKAC	1 cut(s)	154
XmnI	GAANNNNTTC	2 cut(s)	450, 551
XspI	CTAG	2 cut(s)	422, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.