Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

44765295 .. 44766394

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0275300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGATGAGAACAAGCTCCACGTGCTACTCTAACTTCCAAGTACCCAAGTTTTGCAAAACTTTAAGAAGCATACAATACTCTGATGCTCAAGCTAAGATAATTTTGGACGACAAAATTGTAAAGCCGCCTCCTGTTAATGTGTTGGTTTTTGATATTGAAACCACTGGACTTCACCCAAAGAAAGGAGGAATCATTGAAATCGCATTCCGGGATGTTCAAGGTGGCAAGAACAGTTGTTTCCAGACCCTAGTAAACCCCGAGCAAGATGTTCCAAATTCTGATATCCATGGTATAAGAACTGTCATGGTGAGACATACAGATGTCCCAACGTATGTATATCTTTCAACACCTTCAATTAAGCAGTTAGCAGCGGATGAAGGAATTGATTCCATTCCTTCTCCAATACATCCAAAGCCGCCAAGTGCTTGGAGGGCAAGACCAAAGGCTTCTAGAAAGCTCTCACTTCAGGCACTTGGTGAGTTCTATAGGATCCCTTTAGAGGGTTCAGCTCATAGGGCCATGACAGACGTGAACTTGCTAACATCTATACTAGCGAACATGATTTCCGACCTGAAGCTTGGTTCCACTGACCTTTTGCAAAGAACTTTCAAGGCTTCAGATGTGAATAACTCGAAGAAGAACGAGAAGAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

218

Amino Acids

24.18

Weight (kDa)

9.42

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	48 - 104	4.1e-07	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	125, 371, 416
AclWI	GGATC	2 cut(s)	484, 497
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	3 cut(s)	449, 593, 600
AcvI	CACGTG	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	3 cut(s)	182, 499, 500
AgsI	TTSAA	6 cut(s)	158, 197, 218, 345, 354, 610
AjiI	CACGTC	1 cut(s)	529
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	6 cut(s)	15, 92, 457, 509, 577, 654
AluI	AGCT	6 cut(s)	15, 92, 457, 509, 577, 654
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	484, 497
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	164, 319, 488
AvaI	CYCGRG	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	3 cut(s)	248, 450, 551
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	3 cut(s)	125, 369, 416
BlsI	GCNGC	3 cut(s)	126, 370, 417
Bme1390I	CCNGG	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	491, 583
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 499, 500
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	3 cut(s)	217, 379, 406
BseLI	CCNNNNNNNGG	3 cut(s)	182, 499, 500
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	182, 499, 500
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	3 cut(s)	125, 371, 416
BspANI	GGCC	1 cut(s)	518
BspLI	GGNNCC	2 cut(s)	491, 583
BspPI	GGATC	2 cut(s)	484, 497
BspQI	GCTCTTC	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	233, 301
Bst6I	CTCTTC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	217, 379, 406
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 431, 515
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	489
BstXI	CCANNNNNNTGG	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	518
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	217, 379, 406
BtsIMutI	CAGTG	2 cut(s)	162, 585
Cfr13I	GGNCC	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	4 cut(s)	287, 304, 520, 559
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraIII	CACNNNGTG	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	283
Eco57I	CTGAAG	3 cut(s)	449, 593, 600
Eco72I	CACGTG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	4 cut(s)	290, 307, 523, 562
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	4 cut(s)	286, 303, 519, 558
Fnu4HI	GCNGC	3 cut(s)	125, 369, 416
FokI	GGATG	3 cut(s)	224, 386, 393
Fsp4HI	GCNGC	3 cut(s)	125, 369, 416
FspBI	CTAG	3 cut(s)	248, 450, 551
GluI	GCNGC	3 cut(s)	125, 369, 416
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	4 cut(s)	290, 307, 523, 562
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	2 cut(s)	189, 386
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	3 cut(s)	164, 319, 488
Hpy166II	GTNNAC	2 cut(s)	253, 532
Hpy188I	TCNGA	4 cut(s)	82, 280, 568, 619
Hpy188III	TCNNGA	2 cut(s)	241, 450
Hpy8I	GTNNAC	2 cut(s)	253, 532
HpyAV	CCTTC	3 cut(s)	360, 371, 405
HpyCH4III	ACNGT	2 cut(s)	233, 301
HpyCH4IV	ACGT	3 cut(s)	20, 329, 528
HpyCH4V	TGCA	2 cut(s)	54, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 431, 515
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	3 cut(s)	20, 329, 528
Hsp92II	CATG	4 cut(s)	290, 307, 523, 562
Kzo9I	GATC	1 cut(s)	489
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	6 cut(s)	144, 150, 221, 254, 452, 584
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	248, 450, 551
MaeII	ACGT	3 cut(s)	20, 329, 528
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	2 cut(s)	646, 649
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	5 cut(s)	99, 114, 274, 354, 381
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	4 cut(s)	138, 179, 423, 493
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	3 cut(s)	62, 135, 357
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	21, 431, 515
NciI	CCSGG	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	4 cut(s)	290, 307, 523, 562
NlaIV	GGNNCC	2 cut(s)	491, 583
PciSI	GCTCTTC	1 cut(s)	644
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	189, 386
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	126, 370, 417
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	21
PspCI	CACGTG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	491, 583
PspPI	GGNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	62, 135, 357
SatI	GCNGC	3 cut(s)	125, 369, 416
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	1 cut(s)	516
ScrFI	CCNGG	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	99, 114, 274, 354, 381
SsiI	CCGC	3 cut(s)	125, 371, 416
SspMI	CTAG	3 cut(s)	248, 450, 551
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	233, 301
TaiI	ACGT	3 cut(s)	23, 332, 531
TaqI	TCGA	1 cut(s)	632
TasI	AATT	5 cut(s)	99, 114, 274, 354, 381
TauI	GCSGC	2 cut(s)	127, 418
TfiI	GAWTC	2 cut(s)	189, 386
Tru1I	TTAA	3 cut(s)	62, 135, 357
Tru9I	TTAA	3 cut(s)	62, 135, 357
TscAI	CASTG	2 cut(s)	169, 592
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	2 cut(s)	169, 592
XapI	RAATTY	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	3 cut(s)	248, 450, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.