Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

44736852 .. 44739425

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0275100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGACTCTGATTCGTGGAGCAATCTGTTCTCGTCCTCGAACGCGAGGCGGTACCAATCTCGATCCGATCTGTTCGGACACGAGGAAATAGAGGGAGACGATGAGATAAAGGCTGAGTTTTTGTGCCCCTTTTGTGCGGAGGATTTCGATGTCGTTGGGCTTTGTTGTCACATCGATGAGGAACATCCCGTCGAGGCTAAGAATGGGGTCTGTCCAGTTTGTGCAAAGAGGGTGGGATCAAATCTTGTCACCCATATTACCACACAACATGGGAGTTTGTTAAAGGTTCAGCGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACGGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGTGAACAACCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAAGAAGAGTCCTCAGAAAGAATTGCTCAACAACCACCTCTATCAACTAAAGACCAAGAGGAGAAGGCTCGGAAGTGTGAGTTTGTTCAAGGATTGCTGATGTCCACCATTCTTGATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

213

Amino Acids

23.91

Weight (kDa)

5.13

Isoelectric Point (pI)

68.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	39 - 91	5e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	110 - 209	3.9e-34	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	44
AciI	CCGC	2 cut(s)	49, 137
AclWI	GGATC	4 cut(s)	57, 244, 322, 413
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	333, 405, 605
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	4 cut(s)	57, 244, 322, 413
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	53, 414
BpiI	GAAGAC	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	2 cut(s)	184, 478
BseMII	CTCAG	2 cut(s)	105, 543
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	62, 67, 236, 314, 418
BspACI	CCGC	2 cut(s)	49, 137
BspCNI	CTCAG	2 cut(s)	106, 542
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	53, 414
BspPI	GGATC	4 cut(s)	57, 244, 322, 413
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	5 cut(s)	62, 67, 236, 314, 418
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	114, 198, 529
BstF5I	GGATG	2 cut(s)	184, 478
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	5 cut(s)	65, 70, 239, 317, 421
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	5 cut(s)	62, 67, 236, 314, 418
BstNSI	RCATGY	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	184, 478
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	3 cut(s)	213, 248, 610
CviAII	CATG	3 cut(s)	269, 461, 502
CviJI	RGCY	6 cut(s)	113, 160, 197, 349, 371, 584
CviKI_1	RGCY	6 cut(s)	113, 160, 197, 349, 371, 584
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	114, 198, 529
DpnI	GATC	5 cut(s)	64, 69, 238, 316, 420
DpnII	GATC	5 cut(s)	62, 67, 236, 314, 418
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	3 cut(s)	272, 464, 505
FaiI	YATR	7 cut(s)	255, 270, 440, 442, 462, 503, 640
FatI	CATG	3 cut(s)	268, 460, 501
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	171, 465
Fsp4HI	GCNGC	1 cut(s)	350
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	272, 464, 505
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	5, 11, 524
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	3 cut(s)	365, 470, 621
Hpy188I	TCNGA	5 cut(s)	10, 67, 77, 532, 588
Hpy188III	TCNNGA	3 cut(s)	60, 502, 629
Hpy8I	GTNNAC	3 cut(s)	365, 470, 621
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	350, 383, 499, 574
HpyCH4V	TGCA	2 cut(s)	224, 449
HpyF3I	CTNAG	3 cut(s)	114, 198, 529
Hsp92II	CATG	3 cut(s)	272, 464, 505
HspAI	GCGC	1 cut(s)	292
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	62, 67, 236, 314, 418
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	228, 295, 362, 429, 465
Lsp1109I	GCAGC	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	167, 247
MalI	GATC	5 cut(s)	64, 69, 238, 316, 420
MboI	GATC	5 cut(s)	62, 67, 236, 314, 418
MboII	GAAGA	4 cut(s)	378, 393, 423, 533
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	302, 319, 537
MlyI	GAGTC	1 cut(s)	533
MseI	TTAA	2 cut(s)	281, 338
MslI	CAYNNNNRTG	2 cut(s)	174, 465
MvnI	CGCG	1 cut(s)	44
NdeII	GATC	5 cut(s)	62, 67, 236, 314, 418
NlaIII	CATG	3 cut(s)	272, 464, 505
NlaIV	GGNNCC	2 cut(s)	53, 414
NmuCI	GTSAC	2 cut(s)	167, 247
NspI	RCATGY	1 cut(s)	464
PagI	TCATGA	1 cut(s)	501
PciI	ACATGT	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	53, 414
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	174, 465
SaqAI	TTAA	2 cut(s)	281, 338
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	5 cut(s)	62, 67, 236, 314, 418
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	7 cut(s)	288, 351, 385, 418, 454, 499, 556
SmiMI	CAYNNNNRTG	2 cut(s)	174, 465
Sse9I	AATT	3 cut(s)	302, 319, 537
SsiI	CCGC	2 cut(s)	49, 137
SspI	AATATT	1 cut(s)	336
TaqI	TCGA	7 cut(s)	38, 61, 147, 174, 192, 323, 489
TasI	AATT	3 cut(s)	302, 319, 537
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	281, 338
Tru9I	TTAA	2 cut(s)	281, 338
TseFI	GTSAC	2 cut(s)	167, 247
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	2 cut(s)	167, 247
TspDTI	ATGAA	4 cut(s)	378, 471, 490, 518
TspGWI	ACGGA	1 cut(s)	425
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.