Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

10069 .. 11096

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggcgaaaatttgtgacttttgctcgacctcaagcggagctgtacactgtaaagccgatgcggcacatctctgcctgccttgcaatgcaaaacttcattcagctaaccaagtagtgaactggcatccccgtaccatcttatacgactccggcaactacctctcagcttatgttggctgtttggatcacggcagcggtgacggtggcatcgagcttatgtgccagtacttgtgtgaccggaaccaccatgtgacgacatcccaggtgcatcagagactttcaatcaacggttacacgggttgcccggctgccgaggacttagcagcaatttgggatttgcaagtgaatcatgatcacactagtagtacaagtcatgtggggagcttggatattttgggccagattctcgacttgcaaatgattcagactagtgttcctcttggactgtgcagcaatacaactagtcaggttaaagttgactgtgactttttccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

165

Amino Acids

17.86

Weight (kDa)

5.63

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	36, 62, 195
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	4 cut(s)	45, 133, 227, 367
AgsI	TTSAA	1 cut(s)	282
AhlI	ACTAGT	3 cut(s)	359, 428, 461
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	41, 104, 167, 214, 384
AluI	AGCT	5 cut(s)	41, 104, 167, 214, 384
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	4 cut(s)	192, 308, 323, 450
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	209
BbvI	GCAGC	4 cut(s)	204, 295, 335, 462
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	268
BcuI	ACTAGT	3 cut(s)	359, 428, 461
BfaI	CTAG	3 cut(s)	360, 429, 462
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	63, 193, 309, 324, 451
BlsI	GCNGC	5 cut(s)	64, 194, 310, 325, 452
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	263, 305
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	263, 305
BmsI	GCATC	4 cut(s)	49, 133, 216, 277
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	261, 312
BsaWI	WCCGGW	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	125, 223
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	261, 312
BseGI	GGATG	2 cut(s)	124, 257
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	125, 223
BseXI	GCAGC	4 cut(s)	204, 295, 335, 462
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	150, 238, 305
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	184, 352
BspACI	CCGC	3 cut(s)	36, 62, 195
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	125, 223
BssECI	CCNNGG	2 cut(s)	261, 312
BssMI	GATC	2 cut(s)	184, 352
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	5 cut(s)	50, 203, 290, 447, 482
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	163, 319
BstF5I	GGATG	2 cut(s)	124, 257
BstKTI	GATC	2 cut(s)	187, 355
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	2 cut(s)	184, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 81
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	261, 303
BstV1I	GCAGC	4 cut(s)	204, 295, 335, 462
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	124, 257
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	4 cut(s)	44, 132, 226, 366
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	3 cut(s)	248, 350, 374
CviJI	RGCY	9 cut(s)	41, 56, 104, 167, 177, 214, 308, 384, 399
CviKI_1	RGCY	9 cut(s)	41, 56, 104, 167, 177, 214, 308, 384, 399
CviQI	GTAC	4 cut(s)	44, 132, 226, 366
DdeI	CTNAG	2 cut(s)	163, 319
DpnI	GATC	2 cut(s)	186, 354
DpnII	GATC	2 cut(s)	184, 352
DraIII	CACNNNGTG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	251, 353, 377
FaiI	YATR	6 cut(s)	142, 171, 218, 249, 351, 375
FatI	CATG	3 cut(s)	247, 349, 373
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	5 cut(s)	63, 193, 309, 324, 451
FokI	GGATG	2 cut(s)	111, 244
Fsp4HI	GCNGC	5 cut(s)	63, 193, 309, 324, 451
FspBI	CTAG	3 cut(s)	360, 429, 462
GluI	GCNGC	5 cut(s)	63, 193, 309, 324, 451
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	3 cut(s)	150, 238, 305
Hin1II	CATG	3 cut(s)	251, 353, 377
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	146, 346, 403, 421
HpaII	CCGG	3 cut(s)	150, 238, 305
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	46, 118, 478
Hpy188I	TCNGA	2 cut(s)	273, 426
Hpy188III	TCNNGA	2 cut(s)	350, 407
Hpy8I	GTNNAC	3 cut(s)	46, 118, 478
HpyCH4III	ACNGT	5 cut(s)	50, 203, 290, 447, 482
HpyCH4V	TGCA	6 cut(s)	84, 89, 268, 340, 415, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 81
HpyF3I	CTNAG	2 cut(s)	163, 319
Hsp92II	CATG	3 cut(s)	251, 353, 377
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	184, 352
LmnI	GCTCC	2 cut(s)	38, 381
Lsp1109I	GCAGC	4 cut(s)	204, 295, 335, 462
LweI	GCATC	4 cut(s)	49, 133, 216, 277
MaeI	CTAG	3 cut(s)	360, 429, 462
MaeIII	GTNAC	6 cut(s)	14, 197, 233, 250, 290, 482
MalI	GATC	2 cut(s)	186, 354
MboI	GATC	2 cut(s)	184, 352
MluCI	AATT	2 cut(s)	9, 327
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	4 cut(s)	40, 170, 307, 447
MseI	TTAA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	150, 238, 305
MspR9I	CCNGG	2 cut(s)	263, 305
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	62, 81
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	184, 352
NlaIII	CATG	3 cut(s)	251, 353, 377
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	5 cut(s)	14, 197, 233, 250, 482
PagI	TCATGA	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	346, 403, 421
PkrI	GCNGC	5 cut(s)	64, 194, 310, 325, 452
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	397
RsaI	GTAC	4 cut(s)	45, 133, 227, 367
RsaNI	GTAC	4 cut(s)	44, 132, 226, 366
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	5 cut(s)	63, 193, 309, 324, 451
Sau3AI	GATC	2 cut(s)	184, 352
Sau96I	GGNCC	1 cut(s)	397
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	263, 305
SetI	ASST	9 cut(s)	32, 43, 106, 162, 169, 216, 267, 386, 471
SfaNI	GCATC	4 cut(s)	49, 133, 216, 277
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	3 cut(s)	359, 428, 461
Sse9I	AATT	2 cut(s)	9, 327
SsiI	CCGC	3 cut(s)	36, 62, 195
SspMI	CTAG	3 cut(s)	360, 429, 462
StyD4I	CCNGG	2 cut(s)	261, 303
TaaI	ACNGT	5 cut(s)	50, 203, 290, 447, 482
TaqI	TCGA	3 cut(s)	26, 210, 408
TasI	AATT	2 cut(s)	9, 327
TatI	WGTACW	3 cut(s)	43, 225, 365
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	3 cut(s)	346, 403, 421
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	5 cut(s)	14, 197, 233, 250, 482
TseI	GCWGC	4 cut(s)	192, 308, 323, 450
Tsp45I	GTSAC	5 cut(s)	14, 197, 233, 250, 482
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	9
XspI	CTAG	3 cut(s)	360, 429, 462
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.