Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

2031757 .. 2032601

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGAATCTGTCCACCAGTACTGGCAGAAATGCGTCTTGATTTGAAAAGGCTTCAGCTGAGTGAGGAGAATAACCCTAATTCGCTTCTGGTATCTGCTCATGATCAACAAAGTCATGATAAACGTTCTTTAGTGCATCATCACAACGGTACTACTTCAAGCCGGAAATTCGAATCTAATGAAGAACTTCCATTTTATACAGAATCATTTTGGCATTGCAGAAGTCCAGTGCAAAACAGTCAGCTGTGGTCTCAGAATATGCAAGATCTCGGCGTTTGTGAAGAACAAACTTACGATCATGCTGATCTCAATACTCCTGACGTTGATTCGATTTTCCGAAACTTCGAGGAGTCATTTGGAGCTGATCAATATGTACCATATGAGGGCCATGCTAGAGCAAAGGAGAAGTACGATTACAAATGCAGAGCCGCAATTCATGAAAGTTATGCTGCAAATTCAAAGGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

157

Amino Acids

18.13

Weight (kDa)

5.67

Isoelectric Point (pI)

63.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	429
AclI	AACGTT	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	167, 454
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	4 cut(s)	21, 151, 375, 410
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	46, 159, 459
AluBI	AGCT	3 cut(s)	58, 244, 362
AluI	AGCT	3 cut(s)	58, 244, 362
Alw26I	GTCTC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	167, 454
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbvI	GCAGC	1 cut(s)	436
BclI	TGATCA	2 cut(s)	103, 364
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	393
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	2 cut(s)	429, 450
BlsI	GCNGC	2 cut(s)	430, 451
BmcAI	AGTACT	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	385
BmsI	GCATC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	17, 27, 227
Bse3DI	GCAATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	50, 266
BseNI	ACTGG	3 cut(s)	17, 27, 227
BseRI	GAGGAG	2 cut(s)	80, 362
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	387
Bso31I	GGTCTC	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	5 cut(s)	103, 265, 295, 304, 364
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	2 cut(s)	51, 265
BspHI	TCATGA	3 cut(s)	100, 115, 436
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	3 cut(s)	17, 27, 227
BssMI	GATC	5 cut(s)	103, 265, 295, 304, 364
Bst4CI	ACNGT	2 cut(s)	149, 239
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	59, 252
BstKTI	GATC	5 cut(s)	106, 268, 298, 307, 367
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	5 cut(s)	103, 265, 295, 304, 364
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	234
CciI	TCATGA	3 cut(s)	100, 115, 436
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	4 cut(s)	20, 150, 374, 409
CviAII	CATG	5 cut(s)	101, 116, 299, 389, 437
CviJI	RGCY	7 cut(s)	52, 58, 162, 244, 362, 387, 428
CviKI_1	RGCY	7 cut(s)	52, 58, 162, 244, 362, 387, 428
CviQI	GTAC	4 cut(s)	20, 150, 374, 409
DdeI	CTNAG	2 cut(s)	59, 252
DpnI	GATC	5 cut(s)	105, 267, 297, 306, 366
DpnII	GATC	5 cut(s)	103, 265, 295, 304, 364
Eco31I	GGTCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	38
FaeI	CATG	5 cut(s)	104, 119, 302, 392, 440
FatI	CATG	5 cut(s)	100, 115, 298, 388, 436
FauNDI	CATATG	1 cut(s)	379
FbaI	TGATCA	2 cut(s)	103, 364
Fnu4HI	GCNGC	2 cut(s)	429, 450
Fsp4HI	GCNGC	2 cut(s)	429, 450
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	429, 450
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	104, 119, 302, 392, 440
HinfI	GANTC	5 cut(s)	6, 173, 203, 326, 350
HpaII	CCGG	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	255, 338
Hpy188III	TCNNGA	5 cut(s)	38, 101, 116, 317, 437
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	149, 239
HpyCH4IV	ACGT	2 cut(s)	124, 321
HpyCH4V	TGCA	6 cut(s)	136, 219, 232, 262, 423, 452
HpyF3I	CTNAG	2 cut(s)	59, 252
HpySE526I	ACGT	2 cut(s)	124, 321
Hsp92II	CATG	5 cut(s)	104, 119, 302, 392, 440
Ksp22I	TGATCA	2 cut(s)	103, 364
Kzo9I	GATC	5 cut(s)	103, 265, 295, 304, 364
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	6 cut(s)	8, 30, 74, 176, 240, 330
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	124, 321
MalI	GATC	5 cut(s)	105, 267, 297, 306, 366
MboI	GATC	5 cut(s)	103, 265, 295, 304, 364
MboII	GAAGA	2 cut(s)	194, 293
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	4 cut(s)	79, 167, 432, 454
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	3 cut(s)	58, 340, 376
MroXI	GAANNNNTTC	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	58, 244
MspI	CCGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	5 cut(s)	103, 265, 295, 304, 364
NlaIII	CATG	5 cut(s)	104, 119, 302, 392, 440
NmeAIII	GCCGAG	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	171
PagI	TCATGA	3 cut(s)	100, 115, 436
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	6, 173, 203, 326
PkrI	GCNGC	2 cut(s)	430, 451
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp1406I	AACGTT	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	58, 244
RsaI	GTAC	4 cut(s)	21, 151, 375, 410
RsaNI	GTAC	4 cut(s)	20, 150, 374, 409
SatI	GCNGC	2 cut(s)	429, 450
Sau3AI	GATC	5 cut(s)	103, 265, 295, 304, 364
Sau96I	GGNCC	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	1 cut(s)	359
SetI	ASST	5 cut(s)	60, 127, 246, 324, 364
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	171
Sse9I	AATT	4 cut(s)	79, 167, 432, 454
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	149, 239
TaiI	ACGT	2 cut(s)	127, 324
TaqI	TCGA	3 cut(s)	171, 329, 345
TasI	AATT	4 cut(s)	79, 167, 432, 454
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	6, 173, 203, 326
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	195, 425, 453
TspRI	CASTG	1 cut(s)	234
XapI	RAATTY	2 cut(s)	167, 454
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.