Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Forward (+)

9711192 .. 9713675

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006695

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCGAAAATTTGTGACTTTTGCTCGACCTCAAGCGCAGCTGTACACTGTAAAGTCGATGCGGCACATCTCTGCCTGTCTTGCGATGCAAAACTTCATTCAGCTAACCAAGTAGTGAACCGGCTTCCCCGTACCATCTTATACGACTCCTGCAACTACCTCTCAGCTTATGTTGGCTGTTTGGATCACTGCAGCGGCGACGGTGGCGTCGAGCTTATGTGCCACTTGTGTGACCGGAACCACCATGTGACGACATCCCAAGTGCATCAGAGACTTTCAATCAACAGTCACACGGGTTGCCCGGCTGCCGAGGACTCAACAGCAATTTGGGGTTTGCAAGTGATTCATGATCACACTAGTAGTACAAGTCATGTGGGGAGCTTGGATATTTTGGGCCAGATTCTCGACTTGCAAATGATTCATACTACTGTTCCTCTTGGACTGTGCAGCAATTCAACCAGTCAGGTGATTTGGTCTATCCAGTTCTCCAAAAAGTTAAAGTTGACTGTGACTTTTTCCAATGAAAATGCGATAGATTCTGTTAGTTCATTTGTTGGGTCCTCCCATATTCCATTCAAATTTTCTTGGTTCCATTTTTGCCTTGATCACGAATTCATGATTGTCAATCTCAATGTCAACAACGCCCACCATCAGCTGCGATCTGAAAAGATGCAAGACCAGCTTGTGGTTTGTGATGATGATTCAAATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAGATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAACGGCAATTATCACAATCTAGATACGGCGGCAGCCTCCATGGACGGTCTGAGGGAAAGTTCTTCTATTCCTGTCAATGGATCTTTATGTTCGCCCTGCTCGTCAGTACTCTGCAATACTTTAAGCAGTAGTGTCGTTTCACATGGTGTCAAGGGTGAACAAGTCTTTGACGCCAGAGCAAATGCCGTGATGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTATGAAAGGAAAATTCGATATCAAAAGAGGAAAGCCATGGCTGATACACGTAAGCGGGTGAGAGGTCGATTTGCAAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

374

Amino Acids

41.41

Weight (kDa)

6.32

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	331 - 373	8.8e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	685
AciI	CCGC	4 cut(s)	62, 195, 845, 1093
AclWI	GGATC	2 cut(s)	192, 904
AcsI	RAATTY	4 cut(s)	9, 578, 611, 1050
AcyI	GRCGYC	2 cut(s)	207, 987
AdeI	CACNNNGTG	2 cut(s)	247, 962
AfaI	GTAC	5 cut(s)	45, 133, 364, 924, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	685, 742, 893, 1008
AflIII	ACRYGT	1 cut(s)	1085
AgsI	TTSAA	4 cut(s)	279, 456, 577, 705
AhlI	ACTAGT	1 cut(s)	356
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	8 cut(s)	41, 104, 167, 214, 381, 655, 682, 799
AluI	AGCT	8 cut(s)	41, 104, 167, 214, 381, 655, 682, 799
Alw26I	GTCTC	2 cut(s)	265, 753
AlwI	GGATC	2 cut(s)	192, 904
AlwNI	CAGNNNCTG	1 cut(s)	799
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	7 cut(s)	38, 192, 305, 447, 655, 799, 848
ApoI	RAATTY	4 cut(s)	9, 578, 611, 1050
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	394, 558
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	478, 983, 1108
AvaII	GGWCC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	1032
BbvI	GCAGC	7 cut(s)	50, 204, 292, 459, 642, 786, 860
BccI	CCATC	2 cut(s)	143, 657
BceAI	ACGGC	3 cut(s)	835, 858, 986
BcgI	CGANNNNNNTGC	2 cut(s)	931, 965
BclI	TGATCA	4 cut(s)	349, 604, 769, 808
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	265, 753
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	3 cut(s)	357, 728, 836
BfmI	CTRYAG	1 cut(s)	190
BglII	AGATCT	1 cut(s)	775
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	394, 558
BmiI	GGNNCC	3 cut(s)	239, 559, 590
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	4 cut(s)	49, 76, 274, 660
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	1088
BsaBI	GATNNNNATC	2 cut(s)	723, 774
BsaHI	GRCGYC	2 cut(s)	207, 987
BsaJI	CCNNGG	3 cut(s)	309, 855, 1074
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	4 cut(s)	685, 742, 893, 1008
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	459, 481
Bse8I	GATNNNNATC	2 cut(s)	723, 774
BseDI	CCNNGG	3 cut(s)	309, 855, 1074
BseGI	GGATG	1 cut(s)	254
BseJI	GATNNNNATC	2 cut(s)	723, 774
BseLI	CCNNNNNNNGG	4 cut(s)	685, 742, 893, 1008
BseMII	CTCAG	3 cut(s)	177, 776, 857
BseNI	ACTGG	2 cut(s)	459, 481
BseXI	GCAGC	7 cut(s)	50, 204, 292, 459, 642, 786, 860
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	121, 235, 302
BslI	CCNNNNNNNGG	4 cut(s)	685, 742, 893, 1008
BsmAI	GTCTC	2 cut(s)	265, 753
BsmBI	CGTCTC	1 cut(s)	753
BsmI	GAATGC	2 cut(s)	731, 1027
BsnI	GGCC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
Bsp19I	CCATGG	2 cut(s)	855, 1074
BspACI	CCGC	4 cut(s)	62, 195, 845, 1093
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	176, 777, 858
BspHI	TCATGA	2 cut(s)	346, 615
BspLI	GGNNCC	3 cut(s)	239, 559, 590
BspMAI	CTGCAG	1 cut(s)	194
BspPI	GGATC	2 cut(s)	192, 904
BsrFI	RCCGGY	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	459, 481
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	309, 855, 1074
BssMI	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
BssNI	GRCGYC	2 cut(s)	207, 987
BssSI	CACGAG	1 cut(s)	1032
BssT1I	CCWWGG	2 cut(s)	855, 1074
Bst2BI	CACGAG	1 cut(s)	1032
Bst4CI	ACNGT	7 cut(s)	50, 203, 287, 430, 444, 508, 863
BstACI	GRCGYC	2 cut(s)	207, 987
BstAUI	TGTACA	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	1088
BstC8I	GCNNGC	1 cut(s)	1114
BstDEI	CTNAG	3 cut(s)	163, 785, 866
BstDSI	CCRYGG	2 cut(s)	855, 1074
BstF5I	GGATG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	8 cut(s)	187, 352, 607, 662, 772, 778, 811, 899
BstMAI	GTCTC	2 cut(s)	265, 753
BstMBI	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 204, 679, 1024
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	7 cut(s)	50, 204, 292, 459, 642, 786, 860
BstX2I	RGATCY	2 cut(s)	775, 896
BstYI	RGATCY	2 cut(s)	775, 896
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	855, 1074
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	46, 187
Cac8I	GCNNGC	1 cut(s)	1114
CaiI	CAGNNNCTG	1 cut(s)	799
CciI	TCATGA	2 cut(s)	346, 615
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	394, 558
CseI	GACGC	2 cut(s)	196, 995
Csp6I	GTAC	5 cut(s)	44, 132, 363, 923, 1012
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	7 cut(s)	245, 347, 371, 616, 856, 959, 1075
CviQI	GTAC	5 cut(s)	44, 132, 363, 923, 1012
DdeI	CTNAG	3 cut(s)	163, 785, 866
DpnI	GATC	8 cut(s)	186, 351, 606, 661, 771, 777, 810, 898
DpnII	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
DraIII	CACNNNGTG	2 cut(s)	247, 962
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	855, 1074
Eco32I	GATATC	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	611
EcoRV	GATATC	1 cut(s)	1058
EcoT14I	CCWWGG	2 cut(s)	855, 1074
ErhI	CCWWGG	2 cut(s)	855, 1074
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	7 cut(s)	248, 350, 374, 619, 859, 962, 1078
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FatI	CATG	7 cut(s)	244, 346, 370, 615, 855, 958, 1074
FauI	CCCGC	1 cut(s)	1086
FbaI	TGATCA	4 cut(s)	349, 604, 769, 808
FokI	GGATG	1 cut(s)	241
FspBI	CTAG	3 cut(s)	357, 728, 836
GlaI	GCGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	3 cut(s)	121, 235, 302
HgaI	GACGC	2 cut(s)	196, 995
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	2 cut(s)	207, 987
Hin1II	CATG	7 cut(s)	248, 350, 374, 619, 859, 962, 1078
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	2 cut(s)	504, 637
HindII	GTYRAC	2 cut(s)	504, 637
HinfI	GANTC	7 cut(s)	146, 314, 343, 400, 418, 536, 701
HpaII	CCGG	3 cut(s)	121, 235, 302
HphI	GGTGA	3 cut(s)	478, 983, 1108
Hpy166II	GTNNAC	5 cut(s)	46, 118, 504, 637, 974
Hpy188I	TCNGA	5 cut(s)	270, 664, 758, 786, 867
Hpy188III	TCNNGA	7 cut(s)	347, 404, 608, 616, 736, 773, 836
Hpy8I	GTNNAC	5 cut(s)	46, 118, 504, 637, 974
Hpy99I	CGWCG	2 cut(s)	203, 212
HpyCH4III	ACNGT	7 cut(s)	50, 203, 287, 430, 444, 508, 863
HpyCH4IV	ACGT	1 cut(s)	1087
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 204, 679, 1024
HpyF3I	CTNAG	3 cut(s)	163, 785, 866
HpySE526I	ACGT	1 cut(s)	1087
Hsp92I	GRCGYC	2 cut(s)	207, 987
Hsp92II	CATG	7 cut(s)	248, 350, 374, 619, 859, 962, 1078
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	4 cut(s)	349, 604, 769, 808
Kzo9I	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	7 cut(s)	50, 204, 292, 459, 642, 786, 860
LweI	GCATC	4 cut(s)	49, 76, 274, 660
MaeI	CTAG	3 cut(s)	357, 728, 836
MaeII	ACGT	1 cut(s)	1087
MaeIII	GTNAC	5 cut(s)	14, 230, 247, 287, 508
MalI	GATC	8 cut(s)	186, 351, 606, 661, 771, 777, 810, 898
MboI	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
MboII	GAAGA	4 cut(s)	758, 776, 870, 1033
MflI	RGATCY	2 cut(s)	775, 896
MluCI	AATT	8 cut(s)	9, 324, 451, 578, 611, 823, 1050, 1117
MlyI	GAGTC	2 cut(s)	140, 308
MseI	TTAA	3 cut(s)	497, 938, 1120
MslI	CAYNNNNRTG	2 cut(s)	228, 1032
MspA1I	CMGCKG	3 cut(s)	41, 195, 655
MspI	CCGG	3 cut(s)	121, 235, 302
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	2 cut(s)	731, 1027
MwoI	GCNNNNNNNGC	4 cut(s)	81, 204, 679, 1024
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	2 cut(s)	855, 1074
NdeII	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
NlaIII	CATG	7 cut(s)	248, 350, 374, 619, 859, 962, 1078
NlaIV	GGNNCC	3 cut(s)	239, 559, 590
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	5 cut(s)	14, 230, 247, 287, 508
OliI	CACNNNNGTG	1 cut(s)	228
PagI	TCATGA	2 cut(s)	346, 615
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 914
PctI	GAATGC	2 cut(s)	731, 1027
PfeI	GAWTC	5 cut(s)	343, 400, 418, 536, 701
PflMI	CCANNNNNTGG	1 cut(s)	685
PleI	GAGTC	2 cut(s)	140, 308
PpsI	GAGTC	2 cut(s)	140, 308
Ppu21I	YACGTR	1 cut(s)	1088
PpuMI	RGGWCCY	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	558
PspN4I	GGNNCC	3 cut(s)	239, 559, 590
PspPI	GGNCC	2 cut(s)	394, 558
PspPPI	RGGWCCY	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	775, 896
PvuII	CAGCTG	2 cut(s)	41, 655
RsaI	GTAC	5 cut(s)	45, 133, 364, 924, 1013
RsaNI	GTAC	5 cut(s)	44, 132, 363, 923, 1012
RseI	CAYNNNNRTG	2 cut(s)	228, 1032
SaqAI	TTAA	3 cut(s)	497, 938, 1120
Sau3AI	GATC	8 cut(s)	184, 349, 604, 659, 769, 775, 808, 896
Sau96I	GGNCC	2 cut(s)	394, 558
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	2 cut(s)	140, 308
ScrFI	CCNGG	1 cut(s)	302
SfaNI	GCATC	4 cut(s)	49, 76, 274, 660
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	228, 1032
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	8 cut(s)	9, 324, 451, 578, 611, 823, 1050, 1117
SsiI	CCGC	4 cut(s)	62, 195, 845, 1093
SspMI	CTAG	3 cut(s)	357, 728, 836
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	2 cut(s)	855, 1074
TaaI	ACNGT	7 cut(s)	50, 203, 287, 430, 444, 508, 863
TaiI	ACGT	1 cut(s)	1090
TaqI	TCGA	6 cut(s)	26, 57, 210, 405, 1054, 1105
TasI	AATT	8 cut(s)	9, 324, 451, 578, 611, 823, 1050, 1117
TatI	WGTACW	3 cut(s)	43, 362, 922
TauI	GCSGC	3 cut(s)	65, 198, 848
TfiI	GAWTC	5 cut(s)	343, 400, 418, 536, 701
Tru1I	TTAA	3 cut(s)	497, 938, 1120
Tru9I	TTAA	3 cut(s)	497, 938, 1120
TscAI	CASTG	2 cut(s)	53, 194
TseFI	GTSAC	5 cut(s)	14, 230, 247, 287, 508
TseI	GCWGC	7 cut(s)	38, 192, 305, 447, 655, 799, 848
Tsp45I	GTSAC	5 cut(s)	14, 230, 247, 287, 508
TspDTI	ATGAA	7 cut(s)	86, 335, 410, 537, 537, 604, 1056
TspRI	CASTG	2 cut(s)	53, 194
Van91I	CCANNNNNTGG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	4 cut(s)	9, 578, 611, 1050
XbaI	TCTAGA	1 cut(s)	835
XspI	CTAG	3 cut(s)	357, 728, 836
ZrmI	AGTACT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.