Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

60950793 .. 60952600

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG352900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTAGTTCCCGATTACACCCAAAAAGGCAATTCTCCGGTTACACAGGTTGCCCTTCTGCTGGGCAGTTTGCAGCAATGTGGGGTTTCCAGCTGAATGATGACATCACTCTCTCTATAACCAGTAGTTATTGTGTGGAACACTTAAATACTCTTGGCCAAAAGATTCTTCACTTGAAAAGGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATTCAGTACATCAGCTTATATATGGCCAAGAACAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCATACAGAATCAATTTGGCAAAGGACGAGTCCGGTTCAAAGTACTAGTCAGGATGACATGGGGCAATTAAGACTTGGTACTCTTCCGCCAAGCAGCCTCCTCATGGGAAAGGAAACCCTGGATATTGGAGGTAACATTATTTCTCCCATCAAACTCGGCACCAAAATTCGTGGCCGAGAAACTCCCACACTCTGGGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

182

Amino Acids

20.12

Weight (kDa)

6.48

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	537
AciI	CCGC	1 cut(s)	431
AcoI	YGGCCR	3 cut(s)	190, 283, 517
AcsI	RAATTY	2 cut(s)	259, 510
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	3 cut(s)	267, 388, 424
AfiI	CCNNNNNNNGG	3 cut(s)	95, 448, 537
AgsI	TTSAA	3 cut(s)	211, 258, 383
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	127, 223, 274
AluI	AGCT	3 cut(s)	127, 223, 274
AoxI	GGCC	3 cut(s)	190, 283, 517
ApeKI	GCWGC	2 cut(s)	107, 438
ApoI	RAATTY	2 cut(s)	259, 510
ArsI	GACNNNNNNTTYG	4 cut(s)	358, 376, 390, 408
AsuHPI	GGTGA	1 cut(s)	296
BalI	TGGCCA	2 cut(s)	192, 285
BanI	GGYRCC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	119, 450
BccI	CCATC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	1 cut(s)	229
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	39, 390
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	2 cut(s)	108, 439
BlsI	GCNGC	2 cut(s)	109, 440
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	2 cut(s)	71, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 448, 537
Bse1I	ACTGG	2 cut(s)	156, 240
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	464
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	95, 448, 537
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	156, 240
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	119, 450
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	3 cut(s)	192, 285, 519
BshNI	GGYRCC	1 cut(s)	503
BshVI	ATCGAT	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	72, 377
BslI	CCNNNNNNNGG	3 cut(s)	95, 448, 537
BsnI	GGCC	3 cut(s)	192, 285, 519
Bsp143I	GATC	2 cut(s)	33, 229
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	3 cut(s)	192, 285, 519
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	156, 240
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	2 cut(s)	33, 229
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	36, 232
BstMBI	GATC	2 cut(s)	33, 229
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	119, 450
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	192, 285, 519
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	266, 387, 423
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	3 cut(s)	29, 403, 448
CviJI	RGCY	9 cut(s)	24, 127, 192, 217, 223, 274, 285, 441, 519
CviKI_1	RGCY	9 cut(s)	24, 127, 192, 217, 223, 274, 285, 441, 519
CviQI	GTAC	3 cut(s)	266, 387, 423
DpnI	GATC	2 cut(s)	35, 231
DpnII	GATC	2 cut(s)	33, 229
EaeI	YGGCCR	3 cut(s)	190, 283, 517
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	3 cut(s)	32, 406, 451
FaiI	YATR	9 cut(s)	30, 152, 245, 278, 280, 282, 348, 404, 449
FatI	CATG	3 cut(s)	28, 402, 447
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	108, 439
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	108, 439
FspBI	CTAG	2 cut(s)	39, 390
GluI	GCNGC	2 cut(s)	108, 439
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	192, 285, 519
HapII	CCGG	2 cut(s)	72, 377
Hin1II	CATG	3 cut(s)	32, 406, 451
HinfI	GANTC	5 cut(s)	199, 254, 298, 353, 373
HpaII	CCGG	2 cut(s)	72, 377
HphI	GGTGA	1 cut(s)	296
Hpy188III	TCNNGA	3 cut(s)	45, 233, 395
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	107, 346
Hsp92II	CATG	3 cut(s)	32, 406, 451
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	33, 229
Lsp1109I	GCAGC	2 cut(s)	119, 450
MaeI	CTAG	2 cut(s)	39, 390
MaeIII	GTNAC	3 cut(s)	14, 74, 476
MalI	GATC	2 cut(s)	35, 231
MboI	GATC	2 cut(s)	33, 229
MboII	GAAGA	3 cut(s)	194, 303, 419
MflI	RGATCY	1 cut(s)	33
MlsI	TGGCCA	2 cut(s)	192, 285
MluCI	AATT	6 cut(s)	65, 259, 357, 410, 510, 544
MluNI	TGGCCA	2 cut(s)	192, 285
MlyI	GAGTC	2 cut(s)	307, 382
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	452, 455, 467
Mox20I	TGGCCA	2 cut(s)	192, 285
MscI	TGGCCA	2 cut(s)	192, 285
MseI	TTAA	3 cut(s)	179, 413, 547
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	2 cut(s)	192, 285
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	2 cut(s)	72, 377
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
NdeII	GATC	2 cut(s)	33, 229
NlaIII	CATG	3 cut(s)	32, 406, 451
NlaIV	GGNNCC	1 cut(s)	505
NmeAIII	GCCGAG	2 cut(s)	480, 545
NmuCI	GTSAC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	199, 254, 353
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	109, 440
PleI	GAGTC	2 cut(s)	306, 381
PpsI	GAGTC	2 cut(s)	306, 381
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	3 cut(s)	267, 388, 424
RsaNI	GTAC	3 cut(s)	266, 387, 423
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	179, 413, 547
SatI	GCNGC	2 cut(s)	108, 439
Sau3AI	GATC	2 cut(s)	33, 229
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	2 cut(s)	307, 382
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	6 cut(s)	85, 129, 225, 276, 309, 478
SmiMI	CAYNNNNRTG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	6 cut(s)	65, 259, 357, 410, 510, 544
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	2 cut(s)	39, 390
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	252
TasI	AATT	6 cut(s)	65, 259, 357, 410, 510, 544
TatI	WGTACW	2 cut(s)	265, 386
TfiI	GAWTC	3 cut(s)	199, 254, 353
Tru1I	TTAA	3 cut(s)	179, 413, 547
Tru9I	TTAA	3 cut(s)	179, 413, 547
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	107, 438
Tsp45I	GTSAC	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	537
XapI	RAATTY	2 cut(s)	259, 510
XspI	CTAG	2 cut(s)	39, 390
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.