Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

2416243 .. 2418694

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1034200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAAAAGTTGTGATTTGTGCTTGGATTTAAGGCCAGTTGTGTACTGTAAAGCCGACGCTGCACATCTTTGCCTTCCCTGCGATGCAAAAGTCCATTCTGCTAACCCAATTGTCGACTCCCATCAGCGAACCCTCTTATGCGATTCGTGCAAATACCGTTCAGCCGACGATCAGTGTTTGGATCACCGGATGTTTATGTGCCGCGTATGCGACCAGAGCCTGCACCGGCACTCTTCACGGCCGCATCAGAAACGGACCATGATCAGCAGTTATACCGGTTGCCCATCCGCCAAGGAATTTGCAGCATTTTGGGGGTTCCAACTGAATGAGAATCTGTCCACCAGTACTGGCAGAAATGTGATTCTTGATTTGAAAAGGCTTCAGCTGAGTGAGGAGAATAACCCTAATTCATTTCTGGTATCTGCTCATGATCAACAAAGTCATGATAAACGTTCTTCAGTGCATCATCACAACAGTGCTACTTCAAGCCGGAAATTCGAATGTAATGAAGAACTTCCATTTTATACAGAATCATCTTGGCATTGCAGAAGTCCAGTGCAAAATAGTCAGCTGTGGTCTCAGAATATGCAAGATCTCGGGGTTTGTGAAGAACAAACTTACGATCATGCTGATCTCAATACGCCTGACGTTGATTCGACGTTCCGAAACTTCGAGGAGTCATTTGGAGCTGATCAATATGTATCATATGAGGGCCATGCTAGAGCAAAGGAGAAGTACGATTACAAATGCAGAGCCGCAATTCATGAAAGTTATGCTGCAAATTCAAAGGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

267

Amino Acids

30.48

Weight (kDa)

6.45

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	207
AciI	CCGC	4 cut(s)	205, 245, 291, 759
AclI	AACGTT	1 cut(s)	454
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	3 cut(s)	299, 497, 784
AcuI	CTGAAG	2 cut(s)	368, 444
AfaI	GTAC	3 cut(s)	47, 349, 740
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	376, 489, 789
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	3 cut(s)	388, 574, 692
AluI	AGCT	3 cut(s)	388, 574, 692
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	35, 242, 715
ApeKI	GCWGC	3 cut(s)	62, 305, 779
ApoI	RAATTY	3 cut(s)	299, 497, 784
AsiGI	ACCGGT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	258, 715
AsuHPI	GGTGA	1 cut(s)	179
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
BbvI	GCAGC	3 cut(s)	49, 317, 766
BccI	CCATC	2 cut(s)	132, 295
BceAI	ACGGC	1 cut(s)	257
BclI	TGATCA	3 cut(s)	264, 433, 694
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	723
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	6 cut(s)	63, 205, 245, 306, 759, 780
BlsI	GCNGC	6 cut(s)	64, 206, 246, 307, 760, 781
BmcAI	AGTACT	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	258, 715
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	3 cut(s)	76, 256, 475
Bpu14I	TTCGAA	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	2 cut(s)	189, 278
Bse118I	RCCGGY	2 cut(s)	228, 278
Bse1I	ACTGG	4 cut(s)	38, 345, 355, 557
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	198, 287
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	2 cut(s)	380, 596
BseNI	ACTGG	4 cut(s)	38, 345, 355, 557
BseRI	GAGGAG	2 cut(s)	410, 692
BseX3I	CGGCCG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	49, 317, 766
BsgI	GTGCAG	2 cut(s)	48, 209
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	37, 244, 717
BshTI	ACCGGT	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	4 cut(s)	190, 229, 279, 493
BsmAI	GTCTC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	37, 244, 717
Bso31I	GGTCTC	1 cut(s)	585
BsoBI	CYCGRG	1 cut(s)	599
Bsp119I	TTCGAA	1 cut(s)	501
Bsp143I	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
BspACI	CCGC	4 cut(s)	205, 245, 291, 759
BspANI	GGCC	3 cut(s)	37, 244, 717
BspCNI	CTCAG	2 cut(s)	381, 595
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	3 cut(s)	430, 445, 766
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	192
BspT104I	TTCGAA	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	544
BsrFI	RCCGGY	2 cut(s)	228, 278
BsrI	ACTGG	4 cut(s)	38, 345, 355, 557
BssAI	RCCGGY	2 cut(s)	228, 278
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	50, 161, 479
Bst6I	CTCTTC	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	389, 582
BstF5I	GGATG	2 cut(s)	198, 287
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	8 cut(s)	175, 187, 267, 436, 598, 628, 637, 697
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
BstMCI	CGRYCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 81, 150, 210, 219
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	49, 317, 766
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BstZI	CGGCCG	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	37, 244, 717
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	198, 287
BtsIMutI	CAGTG	4 cut(s)	182, 468, 484, 564
Cac8I	GCNNGC	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	3 cut(s)	430, 445, 766
Cfr10I	RCCGGY	2 cut(s)	228, 278
Cfr13I	GGNCC	2 cut(s)	258, 715
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	46, 348, 739
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	6 cut(s)	262, 431, 446, 629, 719, 767
CviQI	GTAC	3 cut(s)	46, 348, 739
DdeI	CTNAG	2 cut(s)	389, 582
DpnI	GATC	8 cut(s)	174, 186, 266, 435, 597, 627, 636, 696
DpnII	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
EaeI	YGGCCR	1 cut(s)	242
EagI	CGGCCG	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	258
Eco52I	CGGCCG	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	368, 444
Eco88I	CYCGRG	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	6 cut(s)	265, 434, 449, 632, 722, 770
FatI	CATG	6 cut(s)	261, 430, 445, 628, 718, 766
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	3 cut(s)	264, 433, 694
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	6 cut(s)	63, 205, 245, 306, 759, 780
FokI	GGATG	2 cut(s)	205, 274
Fsp4HI	GCNGC	6 cut(s)	63, 205, 245, 306, 759, 780
FspBI	CTAG	1 cut(s)	723
GluI	GCNGC	6 cut(s)	63, 205, 245, 306, 759, 780
HaeIII	GGCC	3 cut(s)	37, 244, 717
HapII	CCGG	4 cut(s)	190, 229, 279, 493
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	6 cut(s)	265, 434, 449, 632, 722, 770
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	7 cut(s)	119, 146, 334, 364, 533, 656, 680
HpaII	CCGG	4 cut(s)	190, 229, 279, 493
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	46, 118, 342
Hpy188I	TCNGA	3 cut(s)	252, 585, 668
Hpy188III	TCNNGA	4 cut(s)	368, 431, 446, 767
Hpy8I	GTNNAC	3 cut(s)	46, 118, 342
Hpy99I	CGWCG	3 cut(s)	62, 173, 664
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	50, 161, 479
HpyCH4IV	ACGT	3 cut(s)	454, 651, 662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 81, 150, 210, 219
HpyF3I	CTNAG	2 cut(s)	389, 582
HpySE526I	ACGT	3 cut(s)	454, 651, 662
Hsp92II	CATG	6 cut(s)	265, 434, 449, 632, 722, 770
Ksp22I	TGATCA	3 cut(s)	264, 433, 694
Kzo9I	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
LmnI	GCTCC	1 cut(s)	689
Lsp1109I	GCAGC	3 cut(s)	49, 317, 766
LweI	GCATC	3 cut(s)	76, 256, 475
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	3 cut(s)	454, 651, 662
MalI	GATC	8 cut(s)	174, 186, 266, 435, 597, 627, 636, 696
MboI	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
MboII	GAAGA	5 cut(s)	16, 228, 450, 524, 623
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	6 cut(s)	111, 299, 409, 497, 762, 784
MlyI	GAGTC	2 cut(s)	113, 689
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	4 cut(s)	146, 388, 670, 706
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	388, 574
MspI	CCGG	4 cut(s)	190, 229, 279, 493
MunI	CAATTG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	62, 81, 150, 210, 219
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
NlaIII	CATG	6 cut(s)	265, 434, 449, 632, 722, 770
NlaIV	GGNNCC	1 cut(s)	320
NspV	TTCGAA	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	477
PagI	TCATGA	3 cut(s)	430, 445, 766
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	5 cut(s)	146, 334, 364, 533, 656
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	6 cut(s)	64, 206, 246, 307, 760, 781
PleI	GAGTC	2 cut(s)	113, 688
PpsI	GAGTC	2 cut(s)	113, 688
Psp1406I	AACGTT	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	258, 715
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	2 cut(s)	388, 574
RsaI	GTAC	3 cut(s)	47, 349, 740
RsaNI	GTAC	3 cut(s)	46, 348, 739
RseI	CAYNNNNRTG	1 cut(s)	477
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	63, 205, 245, 306, 759, 780
Sau3AI	GATC	8 cut(s)	172, 184, 264, 433, 595, 625, 634, 694
Sau96I	GGNCC	2 cut(s)	258, 715
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	2 cut(s)	113, 689
SetI	ASST	6 cut(s)	390, 457, 576, 654, 665, 694
SfaNI	GCATC	3 cut(s)	76, 256, 475
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	6 cut(s)	111, 299, 409, 497, 762, 784
SsiI	CCGC	4 cut(s)	205, 245, 291, 759
SspMI	CTAG	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	50, 161, 479
TaiI	ACGT	3 cut(s)	457, 654, 665
TaqI	TCGA	4 cut(s)	117, 501, 659, 675
TasI	AATT	6 cut(s)	111, 299, 409, 497, 762, 784
TatI	WGTACW	2 cut(s)	45, 347
TauI	GCSGC	3 cut(s)	207, 247, 761
TfiI	GAWTC	5 cut(s)	146, 334, 364, 533, 656
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	4 cut(s)	182, 468, 484, 564
TseI	GCWGC	3 cut(s)	62, 305, 779
TspDTI	ATGAA	5 cut(s)	17, 402, 525, 755, 783
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	4 cut(s)	182, 468, 484, 564
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	3 cut(s)	299, 497, 784
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	1 cut(s)	723
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.