Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

60946660 .. 60947457

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCAAGACCAGCTTGGGGTTTGTGATGATGATTCAGATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAGATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAGCGGCAATTATCACAATCTAGATACGGCGGCAGCCTCCATGGACGGTCCGAGGGAAAGTTCTTCTATTCCTGTCAATGGATCTTTATGTTCGCCCTGCTCGTCAGTACTCTACAATACTTTAAGCAGTAGTGTCGTTTCACATGGTGTCAAGGGTGAACAAGTCTTTGACGCCAGAGCAAATGCCGTGATGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTATGAAAGGAAAATTCGATATCAAAAGAGGAAAGCCATAGCTGATACACGTAAGCGGGTGAGAGGTCGATTTGCAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

6.07

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	108 - 150	1.1e-14	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	3 cut(s)	150, 176, 424
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	255, 344
AfiI	CCNNNNNNNGG	4 cut(s)	16, 73, 224, 339
AflIII	ACRYGT	1 cut(s)	416
AluBI	AGCT	3 cut(s)	13, 130, 410
AluI	AGCT	3 cut(s)	13, 130, 410
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	130, 179
ApoI	RAATTY	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	314, 439
AvaII	GGWCC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	117, 191
BceAI	ACGGC	2 cut(s)	189, 317
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	2 cut(s)	100, 139
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	59, 167
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	4 cut(s)	131, 151, 177, 180
BlsI	GCNGC	4 cut(s)	132, 152, 178, 181
BmcAI	AGTACT	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	419
BsaBI	GATNNNNATC	2 cut(s)	54, 105
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	186, 197
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 73, 224, 339
Bse8I	GATNNNNATC	2 cut(s)	54, 105
BseDI	CCNNGG	2 cut(s)	186, 197
BseJI	GATNNNNATC	2 cut(s)	54, 105
BseLI	CCNNNNNNNGG	4 cut(s)	16, 73, 224, 339
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	117, 191
BslI	CCNNNNNNNGG	4 cut(s)	16, 73, 224, 339
BsmAI	GTCTC	1 cut(s)	84
BsmBI	CGTCTC	1 cut(s)	84
BsmI	GAATGC	2 cut(s)	62, 358
Bsp143I	GATC	4 cut(s)	100, 106, 139, 227
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	3 cut(s)	150, 176, 424
BspCNI	CTCAG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	186, 197
BssMI	GATC	4 cut(s)	100, 106, 139, 227
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	186
BstKTI	GATC	4 cut(s)	103, 109, 142, 230
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	100, 106, 139, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 355
BstV1I	GCAGC	2 cut(s)	117, 191
BstX2I	RGATCY	2 cut(s)	106, 227
BstYI	RGATCY	2 cut(s)	106, 227
BtgI	CCRYGG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	194
CpoI	CGGWCCG	1 cut(s)	194
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	254, 343
CspI	CGGWCCG	1 cut(s)	194
CviAII	CATG	2 cut(s)	187, 290
CviJI	RGCY	5 cut(s)	13, 130, 182, 404, 410
CviKI_1	RGCY	5 cut(s)	13, 130, 182, 404, 410
CviQI	GTAC	2 cut(s)	254, 343
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	4 cut(s)	102, 108, 141, 229
DpnII	GATC	4 cut(s)	100, 106, 139, 227
DraIII	CACNNNGTG	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	2 cut(s)	190, 293
FaiI	YATR	6 cut(s)	41, 188, 235, 291, 372, 407
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	2 cut(s)	186, 289
FauI	CCCGC	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	100, 139
Fnu4HI	GCNGC	4 cut(s)	131, 151, 177, 180
Fsp4HI	GCNGC	4 cut(s)	131, 151, 177, 180
FspBI	CTAG	2 cut(s)	59, 167
GluI	GCNGC	4 cut(s)	131, 151, 177, 180
HgaI	GACGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	190, 293
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	2 cut(s)	314, 439
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	4 cut(s)	37, 89, 117, 198
Hpy188III	TCNNGA	3 cut(s)	67, 104, 167
Hpy8I	GTNNAC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	4, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 355
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	418
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	190, 293
Ksp22I	TGATCA	2 cut(s)	100, 139
Kzo9I	GATC	4 cut(s)	100, 106, 139, 227
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	7 cut(s)	23, 57, 80, 137, 231, 256, 334
Lsp1109I	GCAGC	2 cut(s)	117, 191
MaeI	CTAG	2 cut(s)	59, 167
MaeII	ACGT	1 cut(s)	418
MalI	GATC	4 cut(s)	102, 108, 141, 229
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	4 cut(s)	100, 106, 139, 227
MboII	GAAGA	4 cut(s)	89, 107, 201, 364
MflI	RGATCY	2 cut(s)	106, 227
MluCI	AATT	3 cut(s)	154, 381, 448
MnlI	CCTC	5 cut(s)	192, 193, 333, 390, 425
MseI	TTAA	2 cut(s)	269, 451
MslI	CAYNNNNRTG	1 cut(s)	363
Mva1269I	GAATGC	2 cut(s)	62, 358
MwoI	GCNNNNNNNGC	2 cut(s)	10, 355
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	100, 106, 139, 227
NlaIII	CATG	2 cut(s)	190, 293
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PctI	GAATGC	2 cut(s)	62, 358
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	132, 152, 178, 181
Ppu21I	YACGTR	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	2 cut(s)	106, 227
RsaI	GTAC	2 cut(s)	255, 344
RsaNI	GTAC	2 cut(s)	254, 343
RseI	CAYNNNNRTG	1 cut(s)	363
Rsr2I	CGGWCCG	1 cut(s)	194
RsrII	CGGWCCG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	269, 451
SatI	GCNGC	4 cut(s)	131, 151, 177, 180
Sau3AI	GATC	4 cut(s)	100, 106, 139, 227
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	255
SetI	ASST	7 cut(s)	15, 46, 132, 344, 412, 421, 436
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	154, 381, 448
SsiI	CCGC	3 cut(s)	150, 176, 424
SspMI	CTAG	2 cut(s)	59, 167
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	385, 436
TasI	AATT	3 cut(s)	154, 381, 448
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	2 cut(s)	153, 179
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	269, 451
Tru9I	TTAA	2 cut(s)	269, 451
TseI	GCWGC	2 cut(s)	130, 179
TspDTI	ATGAA	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	381
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	2 cut(s)	59, 167
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.