Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Forward (+)

30610424 .. 30613042

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGAAAGCTTGTGAGTTGTGCTTGGAGCTAAGGCCAGTTGTATACTGCAAAGCTGATTCAGCACATCTGTGCCTTCCCTGCGATGCAAAGGTTCATTCTGCTAACCCAATTGTTGGCTGCCATCACCGAACCATTCTATGTGATTCGTGCAAATACCGGTCCGTGGATATCGAGTGTTTGGATCACCTGATGTTTATGTGCCGTGTATGTGACGCGAGCCTGCACAGGAAGTGCTCTCCCCATGGCCAGCATCGGAAACGGACGTTGGCCAGCAGTTTCACAGGTTGCCCATCTGCCAAGGACTTTGCAGCATTTTGGGGTTTCAAATTGGATGAATCCGATGGAGTGGGATCAAACAGTCAAAGATTTAAGAAGATATCTCGTGGTAATGGTCATGGAGGTCACTATCAGAAAAGAAGTACTGGCAATAGTTTTATTCTGGACCAGATTCTTGACTTGAAAAGGCTTCAGCTGAGTCAAGATCAACCAAATCAAGAGAACCCTTCAAGGAGTTTGGAACATAGTCTTAATCATCATCGTTTACAACATTCCCAGGATGATCTCGGCCGTACTGGATCTCAGCAAAGGGACAGCTGTCTACCTGTTCAGGGTCTGATGGTCAAATTTGATCCTTTGCCCCTTCCATTTCCTGAACAGCTGGAGCAATATTTTCCATCATCTTCAAGCACTGCAGGATTTCCATTGCATACAGAATCATTTTGGCAGGGTAGAAGCACGGTGCAGAACAGTCGGCTGTGGTCTCAAAATATGCAAGACCTTGGGGTTTGTGAAGAACAAGCTTATGATCATCACGATCCCAATACACCTGATGTCGATTCGACATTCCGAAACTTCGAGGAATCATTTGGAGGTGATCAGCAAGATGTGCCATACTCCTTCATGGAGAAGAAGGGCCATGCAAGAACAGCCAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

314

Amino Acids

35.45

Weight (kDa)

6.8

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccI	GTMKAC	2 cut(s)	45, 601
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	5 cut(s)	192, 361, 586, 626, 812
AcoI	YGGCCR	3 cut(s)	247, 270, 568
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	424, 574
AfiI	CCNNNNNNNGG	3 cut(s)	116, 166, 611
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	328, 463, 510, 687
AjnI	CCWGG	1 cut(s)	555
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AleI	CACNNNNGTG	1 cut(s)	70
AluBI	AGCT	7 cut(s)	11, 31, 56, 475, 597, 661, 803
AluI	AGCT	7 cut(s)	11, 31, 56, 475, 597, 661, 803
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	5 cut(s)	192, 361, 586, 626, 812
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	5 cut(s)	35, 247, 270, 568, 916
ApeKI	GCWGC	2 cut(s)	120, 311
ApoI	RAATTY	1 cut(s)	626
AsiGI	ACCGGT	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	162, 445, 916
AsuHPI	GGTGA	3 cut(s)	119, 179, 887
AvaII	GGWCC	2 cut(s)	162, 445
BalI	TGGCCA	2 cut(s)	249, 272
BauI	CACGAG	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	107, 323
BccI	CCATC	5 cut(s)	132, 301, 338, 613, 685
BceAI	ACGGC	2 cut(s)	189, 555
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	1 cut(s)	557
BclI	TGATCA	2 cut(s)	808, 877
BcoDI	GTCTC	1 cut(s)	768
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	2 cut(s)	121, 312
BlsI	GCNGC	2 cut(s)	122, 313
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	2 cut(s)	162, 445
BmgT120I	GGNCC	3 cut(s)	162, 445, 916
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	2 cut(s)	76, 262
BoxI	GACNNNNGTC	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	5 cut(s)	165, 244, 300, 555, 781
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 166, 611
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	38, 430, 580
Bse3DI	GCAATG	1 cut(s)	704
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	5 cut(s)	165, 244, 300, 555, 781
BseGI	GGATG	2 cut(s)	340, 565
BseLI	CCNNNNNNNGG	3 cut(s)	116, 166, 611
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	2 cut(s)	467, 596
BseNI	ACTGG	3 cut(s)	38, 430, 580
BseX3I	CGGCCG	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	107, 323
BsgI	GTGCAG	2 cut(s)	209, 764
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	571
BshFI	GGCC	5 cut(s)	37, 249, 272, 570, 918
BshTI	ACCGGT	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	116, 166, 611
BsmAI	GTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	5 cut(s)	37, 249, 272, 570, 918
Bso31I	GGTCTC	1 cut(s)	768
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
Bsp19I	CCATGG	1 cut(s)	244
BspANI	GGCC	5 cut(s)	37, 249, 272, 570, 918
BspCNI	CTCAG	2 cut(s)	468, 595
BspFNI	CGCG	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	5 cut(s)	192, 361, 586, 626, 812
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	38, 430, 580
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	5 cut(s)	165, 244, 300, 555, 781
BssMI	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
BssNAI	GTATAC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	3 cut(s)	244, 300, 781
Bst1107I	GTATAC	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	3 cut(s)	362, 742, 752
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	4 cut(s)	220, 224, 251, 274
BstDEI	CTNAG	3 cut(s)	32, 476, 582
BstDSI	CCRYGG	2 cut(s)	165, 244
BstF5I	GGATG	2 cut(s)	340, 565
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	9 cut(s)	187, 356, 487, 565, 581, 634, 811, 820, 880
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 81, 889, 929
BstNI	CCWGG	1 cut(s)	557
BstPAI	GACNNNNGTC	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	107, 323
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BstZ17I	GTATAC	1 cut(s)	46
BstZI	CGGCCG	1 cut(s)	568
BsuRI	GGCC	5 cut(s)	37, 249, 272, 570, 918
BtgI	CCRYGG	2 cut(s)	165, 244
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	340, 565
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	4 cut(s)	220, 224, 251, 274
CaiI	CAGNNNCTG	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	162, 445, 916
CpoI	CGGWCCG	1 cut(s)	162
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	423, 573
CspAI	ACCGGT	1 cut(s)	159
CspI	CGGWCCG	1 cut(s)	162
CviAII	CATG	4 cut(s)	245, 398, 904, 920
CviQI	GTAC	2 cut(s)	423, 573
DdeI	CTNAG	3 cut(s)	32, 476, 582
DpnI	GATC	9 cut(s)	186, 355, 486, 564, 580, 633, 810, 819, 879
DpnII	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
EaeI	YGGCCR	3 cut(s)	247, 270, 568
EagI	CGGCCG	1 cut(s)	568
EclXI	CGGCCG	1 cut(s)	568
Eco130I	CCWWGG	3 cut(s)	244, 300, 781
Eco31I	GGTCTC	1 cut(s)	768
Eco32I	GATATC	2 cut(s)	172, 381
Eco47I	GGWCC	2 cut(s)	162, 445
Eco52I	CGGCCG	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	555
EcoRV	GATATC	2 cut(s)	172, 381
EcoT14I	CCWWGG	3 cut(s)	244, 300, 781
ErhI	CCWWGG	3 cut(s)	244, 300, 781
FaeI	CATG	4 cut(s)	248, 401, 907, 923
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	4 cut(s)	244, 397, 903, 919
FbaI	TGATCA	2 cut(s)	808, 877
FblI	GTMKAC	2 cut(s)	45, 601
Fnu4HI	GCNGC	2 cut(s)	121, 312
FokI	GGATG	2 cut(s)	347, 572
Fsp4HI	GCNGC	2 cut(s)	121, 312
GluI	GCNGC	2 cut(s)	121, 312
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	5 cut(s)	37, 249, 272, 570, 918
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	4 cut(s)	248, 401, 907, 923
HindIII	AAGCTT	2 cut(s)	9, 801
HinfI	GANTC	8 cut(s)	59, 146, 338, 451, 478, 716, 839, 863
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	3 cut(s)	119, 179, 887
Hpy166II	GTNNAC	3 cut(s)	46, 545, 602
Hpy188I	TCNGA	5 cut(s)	258, 343, 414, 618, 851
Hpy188III	TCNNGA	6 cut(s)	443, 455, 482, 497, 653, 815
Hpy8I	GTNNAC	3 cut(s)	46, 545, 602
HpyAV	CCTTC	5 cut(s)	86, 516, 653, 907, 910
HpyCH4III	ACNGT	3 cut(s)	362, 742, 752
HpyCH4IV	ACGT	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 81, 889, 929
HpyF3I	CTNAG	3 cut(s)	32, 476, 582
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	248, 401, 907, 923
Ksp22I	TGATCA	2 cut(s)	808, 877
Kzo9I	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
LmnI	GCTCC	2 cut(s)	28, 664
Lsp1109I	GCAGC	2 cut(s)	107, 323
LweI	GCATC	2 cut(s)	76, 262
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	212, 404
MalI	GATC	9 cut(s)	186, 355, 486, 564, 580, 633, 810, 819, 879
MboI	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
MboII	GAAGA	4 cut(s)	388, 675, 806, 922
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	239
MlsI	TGGCCA	2 cut(s)	249, 272
MluCI	AATT	3 cut(s)	111, 329, 626
MluNI	TGGCCA	2 cut(s)	249, 272
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	3 cut(s)	395, 853, 866
Mox20I	TGGCCA	2 cut(s)	249, 272
MscI	TGGCCA	2 cut(s)	249, 272
MseI	TTAA	2 cut(s)	372, 531
MslI	CAYNNNNRTG	1 cut(s)	70
Msp20I	TGGCCA	2 cut(s)	249, 272
MspA1I	CMGCKG	3 cut(s)	475, 597, 661
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	557
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	62, 81, 889, 929
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
NlaIII	CATG	4 cut(s)	248, 401, 907, 923
NmeAIII	GCCGAG	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	212, 404
OliI	CACNNNNGTG	1 cut(s)	70
PfeI	GAWTC	7 cut(s)	59, 146, 338, 451, 716, 839, 863
PflMI	CCANNNNNTGG	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	122, 313
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PshAI	GACNNNNGTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspPI	GGNCC	3 cut(s)	162, 445, 916
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	578
PvuII	CAGCTG	3 cut(s)	475, 597, 661
RsaI	GTAC	2 cut(s)	424, 574
RsaNI	GTAC	2 cut(s)	423, 573
RseI	CAYNNNNRTG	1 cut(s)	70
Rsr2I	CGGWCCG	1 cut(s)	162
RsrII	CGGWCCG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	372, 531
SatI	GCNGC	2 cut(s)	121, 312
Sau3AI	GATC	9 cut(s)	184, 353, 484, 562, 578, 631, 808, 817, 877
Sau96I	GGNCC	3 cut(s)	162, 445, 916
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	76, 262
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	2 cut(s)	162, 445
SmiMI	CAYNNNNRTG	1 cut(s)	70
Sse9I	AATT	3 cut(s)	111, 329, 626
SspI	AATATT	1 cut(s)	671
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	3 cut(s)	244, 300, 781
TaaI	ACNGT	3 cut(s)	362, 742, 752
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	4 cut(s)	174, 837, 842, 858
TasI	AATT	3 cut(s)	111, 329, 626
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	7 cut(s)	59, 146, 338, 451, 716, 839, 863
Tru1I	TTAA	2 cut(s)	372, 531
Tru9I	TTAA	2 cut(s)	372, 531
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	2 cut(s)	212, 404
TseI	GCWGC	2 cut(s)	120, 311
Tsp45I	GTSAC	2 cut(s)	212, 404
TspDTI	ATGAA	3 cut(s)	86, 351, 892
TspGWI	ACGGA	2 cut(s)	154, 277
TspRI	CASTG	1 cut(s)	697
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	162, 445
XapI	RAATTY	1 cut(s)	626
XmiI	GTMKAC	2 cut(s)	45, 601
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.