Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

56348562 .. 56351056

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGAAAATTTGTGACTTTTGCTCGACCTCAAGCGCAGCTGTACACTGTAAAGCCGATGCGGCACATCTCTGCCTGTCTTGCGATGCAAAACTTCATTCTGCTAACCAAGCAGTGAACCGGCATCCCCATACCATCTTATACGACTCCTGCAACTACCTCTCAGCTTATGTTGGCTGTTTGGATCACGGCAGCGGCGACGGTGGCATCGAGCTTATGTGCCACTTGTGTGACCGGAACCACCATGTGACGACATCCCAAGTGCATCAGAGACTTTCAATCAACAGTTACAAGGGTTGCCCGGATGCCGAGGACTTCGCAGCAATTTGGGGTTTGCAAGTGAATCATGATCACACTAGTAGTACAAGTCATGTGGGGAGCTTGGATATTTTGGGCCAGATTCTCGACTTGCAAATGATTCAGACTACTGTTCCTCTTGGACTGTACAGCAATACAACTAGTCAGGTGATTTGGTTAAAGTTGACTGTGACTTTTTCCAATGAAAATGCGATAGATTCTGTTATTTCATTTGTTGGGTCCTCCCATATTCCATTCAAATTTTCTTGGTTCCATTTTTGCCTTGATCACGAATTCATGATTGTCAATCTCAATGTCAACAACGCCCACCATCAGCTGCGATCTGAAAAGGTGCAAGACCAGCTTGGGGTTTGTGATGATGATTCAAATATACCTGATGATGAGTATCTAGCATTCCTGAACTTGGAAGAACTAATCGGAGACGAAGATGATCAAGATCTTATTCTGAGAACCCAGAAGCTGCTTGATGATCACGGGAACGGCAATTATCACAATCTAGATACGGCGGCAGCCTCCATGGACGGTCCGAGGGAAAGTTCTTCTATTCCTGTCAATGGATCCTTATGTTTGCCCTGCTCAGCAAATGCCGTGACGAGGTACAAGCAGAAGAAGCATTCTCGTGTGTATGAAAGGAAAATTCGATATCAAAAGAGGAAAGCCATAGCTGATACACGTAAGCGGGTGGGAGGTCGATTTGCAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

341

Amino Acids

38.04

Weight (kDa)

5.99

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	301 - 341	2.1e-13	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	62, 195, 824, 997
AclWI	GGATC	3 cut(s)	192, 870, 883
AcsI	RAATTY	4 cut(s)	9, 557, 590, 954
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	4 cut(s)	45, 364, 446, 917
AfiI	CCNNNNNNNGG	4 cut(s)	664, 721, 872, 912
AflIII	ACRYGT	1 cut(s)	989
AgsI	TTSAA	3 cut(s)	279, 556, 684
AhlI	ACTAGT	2 cut(s)	356, 458
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	8 cut(s)	41, 167, 214, 381, 634, 661, 778, 983
AluI	AGCT	8 cut(s)	41, 167, 214, 381, 634, 661, 778, 983
Alw26I	GTCTC	2 cut(s)	265, 732
AlwI	GGATC	3 cut(s)	192, 870, 883
AlwNI	CAGNNNCTG	1 cut(s)	778
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	6 cut(s)	38, 192, 320, 634, 778, 827
ApoI	RAATTY	4 cut(s)	9, 557, 590, 954
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	394, 537, 842
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	537, 842
BamHI	GGATCC	1 cut(s)	875
BauI	CACGAG	1 cut(s)	936
BbvI	GCAGC	6 cut(s)	50, 204, 332, 621, 765, 839
BccI	CCATC	2 cut(s)	143, 636
BceAI	ACGGC	4 cut(s)	205, 814, 837, 890
BclI	TGATCA	4 cut(s)	349, 583, 748, 787
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	265, 732
BcuI	ACTAGT	2 cut(s)	356, 458
BfaI	CTAG	4 cut(s)	357, 459, 707, 815
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	9 cut(s)	39, 63, 193, 196, 321, 635, 779, 825, 828
BlpI	GCTNAGC	1 cut(s)	895
BlsI	GCNGC	9 cut(s)	40, 64, 194, 197, 322, 636, 780, 826, 829
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	537, 842
BmgT120I	GGNCC	3 cut(s)	394, 537, 842
BmiI	GGNNCC	4 cut(s)	239, 538, 569, 877
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	6 cut(s)	49, 76, 133, 216, 274, 295
Bpu1102I	GCTNAGC	1 cut(s)	895
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	992
BsaBI	GATNNNNATC	2 cut(s)	702, 753
BsaJI	CCNNGG	3 cut(s)	309, 834, 845
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	4 cut(s)	664, 721, 872, 912
Bse118I	RCCGGY	1 cut(s)	120
Bse8I	GATNNNNATC	2 cut(s)	702, 753
BseDI	CCNNGG	3 cut(s)	309, 834, 845
BseGI	GGATG	3 cut(s)	124, 254, 310
BseJI	GATNNNNATC	2 cut(s)	702, 753
BseLI	CCNNNNNNNGG	4 cut(s)	664, 721, 872, 912
BseMII	CTCAG	3 cut(s)	177, 755, 909
BseXI	GCAGC	6 cut(s)	50, 204, 332, 621, 765, 839
BshFI	GGCC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	121, 235, 302
BslI	CCNNNNNNNGG	4 cut(s)	664, 721, 872, 912
BsmAI	GTCTC	2 cut(s)	265, 732
BsmBI	CGTCTC	1 cut(s)	732
BsmI	GAATGC	2 cut(s)	710, 931
BsnI	GGCC	1 cut(s)	396
Bsp1407I	TGTACA	2 cut(s)	43, 444
Bsp143I	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
Bsp1720I	GCTNAGC	1 cut(s)	895
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	4 cut(s)	62, 195, 824, 997
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	176, 756, 908
BspHI	TCATGA	2 cut(s)	346, 594
BspLI	GGNNCC	4 cut(s)	239, 538, 569, 877
BspPI	GGATC	3 cut(s)	192, 870, 883
BsrFI	RCCGGY	1 cut(s)	120
BsrGI	TGTACA	2 cut(s)	43, 444
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	309, 834, 845
BssMI	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
BssSI	CACGAG	1 cut(s)	936
BssT1I	CCWWGG	1 cut(s)	834
Bst2BI	CACGAG	1 cut(s)	936
Bst4CI	ACNGT	7 cut(s)	50, 203, 287, 430, 444, 487, 842
BstAUI	TGTACA	2 cut(s)	43, 444
BstBAI	YACGTR	1 cut(s)	992
BstDEI	CTNAG	3 cut(s)	163, 764, 895
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	3 cut(s)	124, 254, 310
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	8 cut(s)	187, 352, 586, 641, 751, 757, 790, 878
BstMAI	GTCTC	2 cut(s)	265, 732
BstMBI	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 81, 110, 204, 658, 928
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	6 cut(s)	50, 204, 332, 621, 765, 839
BstX2I	RGATCY	2 cut(s)	754, 875
BstYI	RGATCY	2 cut(s)	754, 875
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	124, 254, 310
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	46, 120
CaiI	CAGNNNCTG	1 cut(s)	778
CciI	TCATGA	2 cut(s)	346, 594
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	394, 537, 842
CpoI	CGGWCCG	1 cut(s)	842
Csp6I	GTAC	4 cut(s)	44, 363, 445, 916
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CspI	CGGWCCG	1 cut(s)	842
CviAII	CATG	5 cut(s)	245, 347, 371, 595, 835
CviQI	GTAC	4 cut(s)	44, 363, 445, 916
DdeI	CTNAG	3 cut(s)	163, 764, 895
DpnI	GATC	8 cut(s)	186, 351, 585, 640, 750, 756, 789, 877
DpnII	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
DraIII	CACNNNGTG	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	834
Eco32I	GATATC	1 cut(s)	962
Eco47I	GGWCC	2 cut(s)	537, 842
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	590
EcoRV	GATATC	1 cut(s)	962
EcoT14I	CCWWGG	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	834
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	5 cut(s)	248, 350, 374, 598, 838
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FatI	CATG	5 cut(s)	244, 346, 370, 594, 834
FauI	CCCGC	1 cut(s)	990
FbaI	TGATCA	4 cut(s)	349, 583, 748, 787
Fnu4HI	GCNGC	9 cut(s)	39, 63, 193, 196, 321, 635, 779, 825, 828
FokI	GGATG	3 cut(s)	111, 241, 317
Fsp4HI	GCNGC	9 cut(s)	39, 63, 193, 196, 321, 635, 779, 825, 828
FspBI	CTAG	4 cut(s)	357, 459, 707, 815
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	9 cut(s)	39, 63, 193, 196, 321, 635, 779, 825, 828
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	3 cut(s)	121, 235, 302
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	248, 350, 374, 598, 838
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	2 cut(s)	483, 616
HindII	GTYRAC	2 cut(s)	483, 616
HinfI	GANTC	6 cut(s)	146, 343, 400, 418, 515, 680
HpaII	CCGG	3 cut(s)	121, 235, 302
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	4 cut(s)	46, 118, 483, 616
Hpy188I	TCNGA	6 cut(s)	270, 423, 643, 737, 765, 846
Hpy188III	TCNNGA	7 cut(s)	347, 404, 587, 595, 715, 752, 815
Hpy8I	GTNNAC	4 cut(s)	46, 118, 483, 616
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	7 cut(s)	50, 203, 287, 430, 444, 487, 842
HpyCH4IV	ACGT	1 cut(s)	991
HpyCH4V	TGCA	7 cut(s)	89, 153, 265, 337, 412, 652, 1016
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 81, 110, 204, 658, 928
HpyF3I	CTNAG	3 cut(s)	163, 764, 895
HpySE526I	ACGT	1 cut(s)	991
Hsp92II	CATG	5 cut(s)	248, 350, 374, 598, 838
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	4 cut(s)	349, 583, 748, 787
Kzo9I	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	6 cut(s)	50, 204, 332, 621, 765, 839
LweI	GCATC	6 cut(s)	49, 76, 133, 216, 274, 295
MaeI	CTAG	4 cut(s)	357, 459, 707, 815
MaeII	ACGT	1 cut(s)	991
MaeIII	GTNAC	6 cut(s)	14, 230, 247, 287, 487, 907
MalI	GATC	8 cut(s)	186, 351, 585, 640, 750, 756, 789, 877
MboI	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
MboII	GAAGA	4 cut(s)	737, 755, 849, 937
MflI	RGATCY	2 cut(s)	754, 875
MluCI	AATT	7 cut(s)	9, 324, 557, 590, 802, 954, 1021
MlyI	GAGTC	1 cut(s)	140
MseI	TTAA	2 cut(s)	476, 1024
MslI	CAYNNNNRTG	2 cut(s)	228, 936
MspA1I	CMGCKG	3 cut(s)	41, 195, 634
MspI	CCGG	3 cut(s)	121, 235, 302
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	2 cut(s)	710, 931
MwoI	GCNNNNNNNGC	6 cut(s)	62, 81, 110, 204, 658, 928
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
NlaIII	CATG	5 cut(s)	248, 350, 374, 598, 838
NlaIV	GGNNCC	4 cut(s)	239, 538, 569, 877
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	5 cut(s)	14, 230, 247, 487, 907
OliI	CACNNNNGTG	1 cut(s)	228
PagI	TCATGA	2 cut(s)	346, 594
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 207
PctI	GAATGC	2 cut(s)	710, 931
PfeI	GAWTC	5 cut(s)	343, 400, 418, 515, 680
PkrI	GCNGC	9 cut(s)	40, 64, 194, 197, 322, 636, 780, 826, 829
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	992
PpuMI	RGGWCCY	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	537
PspN4I	GGNNCC	4 cut(s)	239, 538, 569, 877
PspPI	GGNCC	3 cut(s)	394, 537, 842
PspPPI	RGGWCCY	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	754, 875
PvuII	CAGCTG	2 cut(s)	41, 634
RsaI	GTAC	4 cut(s)	45, 364, 446, 917
RsaNI	GTAC	4 cut(s)	44, 363, 445, 916
RseI	CAYNNNNRTG	2 cut(s)	228, 936
Rsr2I	CGGWCCG	1 cut(s)	842
RsrII	CGGWCCG	1 cut(s)	842
SaqAI	TTAA	2 cut(s)	476, 1024
SatI	GCNGC	9 cut(s)	39, 63, 193, 196, 321, 635, 779, 825, 828
Sau3AI	GATC	8 cut(s)	184, 349, 583, 638, 748, 754, 787, 875
Sau96I	GGNCC	3 cut(s)	394, 537, 842
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	302
SfaNI	GCATC	6 cut(s)	49, 76, 133, 216, 274, 295
SinI	GGWCC	2 cut(s)	537, 842
SmiMI	CAYNNNNRTG	2 cut(s)	228, 936
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SpeI	ACTAGT	2 cut(s)	356, 458
Sse9I	AATT	7 cut(s)	9, 324, 557, 590, 802, 954, 1021
SsiI	CCGC	4 cut(s)	62, 195, 824, 997
SspMI	CTAG	4 cut(s)	357, 459, 707, 815
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	7 cut(s)	50, 203, 287, 430, 444, 487, 842
TaiI	ACGT	1 cut(s)	994
TaqI	TCGA	5 cut(s)	26, 210, 405, 958, 1009
TasI	AATT	7 cut(s)	9, 324, 557, 590, 802, 954, 1021
TatI	WGTACW	3 cut(s)	43, 362, 444
TauI	GCSGC	3 cut(s)	65, 198, 827
TfiI	GAWTC	5 cut(s)	343, 400, 418, 515, 680
Tru1I	TTAA	2 cut(s)	476, 1024
Tru9I	TTAA	2 cut(s)	476, 1024
TscAI	CASTG	2 cut(s)	53, 120
TseFI	GTSAC	5 cut(s)	14, 230, 247, 487, 907
TseI	GCWGC	6 cut(s)	38, 192, 320, 634, 778, 827
Tsp45I	GTSAC	5 cut(s)	14, 230, 247, 487, 907
TspDTI	ATGAA	5 cut(s)	86, 516, 516, 583, 960
TspRI	CASTG	2 cut(s)	53, 120
VpaK11BI	GGWCC	2 cut(s)	537, 842
XapI	RAATTY	4 cut(s)	9, 557, 590, 954
XbaI	TCTAGA	1 cut(s)	814
XspI	CTAG	4 cut(s)	357, 459, 707, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.