Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00262

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

8514 .. 9547

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGAAAATTTGCGAGTTCTGCTTGGCATCAAGGCCAGTGGTACACTGTAAAGCCGATGCAGCACATCTTTGCCTTTCCTGCGATGCCAAAATCCACTCAGCTAACGCAATTGTAAACCGGCACCACCGTACAGTCTTATGTGATTCATGCAACTATCTCTCAGCCTATGTTCGGTGTCTAGATCACAACGATCACCGCATCAGGCTCATGTGTCATTTCTGTGACCAGAGCCAGCATGAGATCTCTTGTTCCCGATTACACCCAAAAAGGCAATTCTCCGGTTACACAGGTTGCCCTTCTGCTGAGCAGTTTGCAGCAATTCTCCGGTTACATCACTCTCTCTATAACCAGCTTCAGCTCACTGATCAGGAAACCAGTATAAATATCGATTCAAATTCAGTACATCAGCTTATATATGGCCAAGAACAAACGAGTCATCACCTATCTTCTAACACATCAAGCACCGTTGGAGTTCCGTTGCATACAGAATCAATTTGGCAGTGGACGAGTCCGGTTCAAAGTACTAGTCAGGTTGATTCTCAAAATGTGCAAGATCGGATCCAGGTCTGCAAGAAACTCACTTGTCCTGATGATTCCAATTTATCGAATGCTGAATGTTTGGCAGTCCTAAACTTTGAATTAGGATTACTCGTAGATGATGATAATAATCATGATGATGTACCGTTGTCTTATGCCTCCTCCCCATGGACCAATCAAGAGCAGAAGCGTCTATTCACATCAATGGGTCTTCATCTTCGTCGACCTCTTCGTCCGTATTCTGTACAATTCCAGGCAATGTTAGTTCCTGCGGCCTCAAGGGTGAAGAACATTTGGAAGCGAGAGAGCAAAGGCCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

287

Amino Acids

32.56

Weight (kDa)

6.66

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	771
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	763
AciI	CCGC	2 cut(s)	199, 812
AclWI	GGATC	2 cut(s)	556, 569
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	9, 397
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	6 cut(s)	45, 133, 405, 526, 684, 786
AfiI	CCNNNNNNNGG	2 cut(s)	174, 708
AgsI	TTSAA	3 cut(s)	396, 521, 641
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	564, 792
AluBI	AGCT	4 cut(s)	104, 355, 361, 412
AluI	AGCT	4 cut(s)	104, 355, 361, 412
AlwI	GGATC	2 cut(s)	556, 569
AoxI	GGCC	4 cut(s)	35, 421, 813, 853
ApeKI	GCWGC	2 cut(s)	62, 317
ApoI	RAATTY	2 cut(s)	9, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspS9I	GGNCC	1 cut(s)	711
AsuHPI	GGTGA	3 cut(s)	188, 434, 835
AvaII	GGWCC	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	74, 329
BciT130I	CCWGG	2 cut(s)	566, 794
BclI	TGATCA	1 cut(s)	367
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	2 cut(s)	182, 528
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	3 cut(s)	63, 318, 813
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	64, 319, 814
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	566, 794
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	711
BmiI	GGNNCC	2 cut(s)	125, 563
BmrFI	CCNGG	2 cut(s)	566, 794
BmsI	GCATC	4 cut(s)	38, 49, 76, 210
BpiI	GAAGAC	1 cut(s)	743
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	802
Bsa29I	ATCGAT	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	707
BsaWI	WCCGGW	3 cut(s)	281, 327, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 708
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	38, 378
Bse3DI	GCAATG	1 cut(s)	804
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	566, 794
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	707
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	174, 708
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	114, 177, 297
BseNI	ACTGG	2 cut(s)	38, 378
BseRI	GAGGAG	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	74, 329
BshFI	GGCC	4 cut(s)	37, 423, 815, 855
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	390
BsiSI	CCGG	4 cut(s)	121, 282, 328, 515
BslI	CCNNNNNNNGG	2 cut(s)	174, 708
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	4 cut(s)	37, 423, 815, 855
Bsp1407I	TGTACA	1 cut(s)	784
Bsp143I	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	707
BspACI	CCGC	2 cut(s)	199, 812
BspANI	GGCC	4 cut(s)	37, 423, 815, 855
BspCNI	CTCAG	3 cut(s)	113, 176, 298
BspDI	ATCGAT	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	2 cut(s)	125, 563
BspPI	GGATC	2 cut(s)	556, 569
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	804
BsrFI	RCCGGY	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	784
BsrI	ACTGG	2 cut(s)	38, 378
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	2 cut(s)	566, 794
Bst4CI	ACNGT	5 cut(s)	50, 131, 136, 469, 687
Bst6I	CTCTTC	1 cut(s)	774
BstAUI	TGTACA	1 cut(s)	784
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	3 cut(s)	100, 163, 306
BstDSI	CCRYGG	1 cut(s)	707
BstKTI	GATC	6 cut(s)	187, 196, 246, 370, 559, 564
BstMBI	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
BstNI	CCWGG	2 cut(s)	566, 794
BstSCI	CCNGG	2 cut(s)	564, 792
BstV1I	GCAGC	2 cut(s)	74, 329
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	2 cut(s)	243, 561
BstYI	RGATCY	2 cut(s)	243, 561
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	4 cut(s)	37, 423, 815, 855
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	707
BtgZI	GCGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	4 cut(s)	45, 46, 363, 509
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	711
ClaI	ATCGAT	1 cut(s)	390
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	6 cut(s)	44, 132, 404, 525, 683, 785
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	6 cut(s)	150, 211, 239, 674, 708, 857
CviQI	GTAC	6 cut(s)	44, 132, 404, 525, 683, 785
DdeI	CTNAG	3 cut(s)	100, 163, 306
DpnI	GATC	6 cut(s)	186, 195, 245, 369, 558, 563
DpnII	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
DrdI	GACNNNNNNGTC	1 cut(s)	771
DseDI	GACNNNNNNGTC	1 cut(s)	771
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	564, 792
EcoT14I	CCWWGG	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	6 cut(s)	153, 214, 242, 677, 711, 860
FatI	CATG	6 cut(s)	149, 210, 238, 673, 707, 856
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	63, 318, 813
Fsp4HI	GCNGC	3 cut(s)	63, 318, 813
FspBI	CTAG	2 cut(s)	182, 528
GluI	GCNGC	3 cut(s)	63, 318, 813
HaeIII	GGCC	4 cut(s)	37, 423, 815, 855
HapII	CCGG	4 cut(s)	121, 282, 328, 515
HgaI	GACGC	1 cut(s)	719
Hin1II	CATG	6 cut(s)	153, 214, 242, 677, 711, 860
HincII	GTYRAC	1 cut(s)	764
HindII	GTYRAC	1 cut(s)	764
HinfI	GANTC	7 cut(s)	146, 392, 436, 491, 511, 539, 596
HpaII	CCGG	4 cut(s)	121, 282, 328, 515
HphI	GGTGA	3 cut(s)	188, 434, 835
Hpy166II	GTNNAC	4 cut(s)	46, 118, 507, 764
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	6 cut(s)	182, 255, 371, 590, 674, 719
Hpy8I	GTNNAC	4 cut(s)	46, 118, 507, 764
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	5 cut(s)	50, 131, 136, 469, 687
HpyCH4V	TGCA	6 cut(s)	62, 153, 317, 484, 553, 573
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
HpyF3I	CTNAG	3 cut(s)	100, 163, 306
Hsp92II	CATG	6 cut(s)	153, 214, 242, 677, 711, 860
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
Lsp1109I	GCAGC	2 cut(s)	74, 329
LweI	GCATC	4 cut(s)	38, 49, 76, 210
MaeI	CTAG	2 cut(s)	182, 528
MaeIII	GTNAC	3 cut(s)	224, 284, 330
MalI	GATC	6 cut(s)	186, 195, 245, 369, 558, 563
MboI	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
MboII	GAAGA	5 cut(s)	441, 743, 749, 761, 838
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	2 cut(s)	243, 561
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	9 cut(s)	9, 111, 275, 321, 397, 495, 601, 641, 788
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	445, 520
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	4 cut(s)	709, 712, 777, 826
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MslI	CAYNNNNRTG	3 cut(s)	222, 678, 743
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	4 cut(s)	121, 282, 328, 515
MspR9I	CCNGG	2 cut(s)	566, 794
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	566, 794
MwoI	GCNNNNNNNGC	3 cut(s)	21, 62, 81
NcoI	CCATGG	1 cut(s)	707
NdeII	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
NlaIII	CATG	6 cut(s)	153, 214, 242, 677, 711, 860
NlaIV	GGNNCC	2 cut(s)	125, 563
NmuCI	GTSAC	1 cut(s)	224
PagI	TCATGA	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	5 cut(s)	146, 392, 491, 539, 596
PkrI	GCNGC	3 cut(s)	64, 319, 814
PleI	GAGTC	2 cut(s)	444, 519
PpsI	GAGTC	2 cut(s)	444, 519
Psp6I	CCWGG	2 cut(s)	564, 792
PspGI	CCWGG	2 cut(s)	564, 792
PspN4I	GGNNCC	2 cut(s)	125, 563
PspPI	GGNCC	1 cut(s)	711
PsuI	RGATCY	2 cut(s)	243, 561
RsaI	GTAC	6 cut(s)	45, 133, 405, 526, 684, 786
RsaNI	GTAC	6 cut(s)	44, 132, 404, 525, 683, 785
RseI	CAYNNNNRTG	3 cut(s)	222, 678, 743
SalI	GTCGAC	1 cut(s)	762
SatI	GCNGC	3 cut(s)	63, 318, 813
Sau3AI	GATC	6 cut(s)	184, 193, 243, 367, 556, 561
Sau96I	GGNCC	1 cut(s)	711
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	445, 520
ScrFI	CCNGG	2 cut(s)	566, 794
SetI	ASST	9 cut(s)	106, 295, 357, 363, 414, 447, 537, 570, 769
SfaNI	GCATC	4 cut(s)	38, 49, 76, 210
SinI	GGWCC	1 cut(s)	711
SmiMI	CAYNNNNRTG	3 cut(s)	222, 678, 743
SmlI	CTYRAG	1 cut(s)	817
SmoI	CTYRAG	1 cut(s)	817
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	9 cut(s)	9, 111, 275, 321, 397, 495, 601, 641, 788
SsiI	CCGC	2 cut(s)	199, 812
SspMI	CTAG	2 cut(s)	182, 528
StyD4I	CCNGG	2 cut(s)	564, 792
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	5 cut(s)	50, 131, 136, 469, 687
TaqI	TCGA	3 cut(s)	390, 608, 763
TasI	AATT	9 cut(s)	9, 111, 275, 321, 397, 495, 601, 641, 788
TatI	WGTACW	3 cut(s)	403, 524, 784
TauI	GCSGC	1 cut(s)	815
TfiI	GAWTC	5 cut(s)	146, 392, 491, 539, 596
TscAI	CASTG	4 cut(s)	45, 53, 370, 509
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	62, 317
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	138, 743
TspGWI	ACGGA	2 cut(s)	468, 765
TspRI	CASTG	4 cut(s)	45, 53, 370, 509
VpaK11BI	GGWCC	1 cut(s)	711
XapI	RAATTY	2 cut(s)	9, 397
XbaI	TCTAGA	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	763
XspI	CTAG	2 cut(s)	182, 528
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.