Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

2422630 .. 2424470

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1034400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCGCAGTATTTTGTGTGATTCGTGCAGATACCGCCCAGCTTATATCCAGTGTTTGGATCACAAGATGTTTATGTGCTGTGCCTGTGAGAGTGCTTTGCACATGATCCCTTCCCAACATCAGAAAAGGGCAATCAGCTGTTACACAGGTTCACCGCTTGCTAAGGACTTGTCCAATTCTTGTGGCTCTTCTTGTGACTCAAGTGCAGTAAACTTGGATGGTCTAGAACAGTCTTGCTCTCGAGCCGAAAGCCTTCCGGCAGTAAATTCTCTCACCTGGATTCCAGGTGCTGAATCTGAAGCAGTCAACAATACAAGGTATGCAGGAACTATTTATATGTTATCTTTAAACTTGGCTGAGAATATATCTCATGAAGGTCAGGAGCATAATTTCATTCTGCACCAGATTCTTGACTTGAAAAGGCTTCAGCTTGCTGAGGGGAATACACCTTCGCTGCTGATACGCGGTACAGAACAAATTGACCTATCTTCCTCAGTACTTCAGACATCAAAGCGGCTCAATGTTCATCTTGATCGGCTTTTACAACATTCCCAGAATTCCGGCACTAAATTTAGGCAAAGGGACAGTCTAGTTCAGGAGCTGAAAGTTGATCATTTATCATTTCCATTTTCTCAAATGGAGCTTATGCAACCATCTTCAACTGCTGGACTTCCATTGCATACAGAATCCTTTTGGCAATGCAGAAGTACGGTTCAAAGTAATCAGTTGTGGCCTCAAAATATGCAAGACATAGGAGTTTGTGAAGAACTTGTTTGTCCCGATGATTTCAATATACCTGATGTTGATATGACATTTCAAAACTTCGAAGAACTATTCGGAGGTGATCAAGATCCTATCAGAGCTGCAGTGCTTCATGATAAAGATGTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

298

Amino Acids

33.28

Weight (kDa)

5.13

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	892
Acc16I	TGCGCA	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccII	CGCG	1 cut(s)	465
AciI	CCGC	4 cut(s)	34, 155, 465, 514
AclWI	GGATC	3 cut(s)	66, 100, 845
AcsI	RAATTY	3 cut(s)	265, 556, 569
AcuI	CTGAAG	3 cut(s)	318, 410, 485
AfaI	GTAC	3 cut(s)	469, 498, 709
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	418, 660, 716, 790, 818
AjnI	CCWGG	2 cut(s)	275, 283
AluBI	AGCT	6 cut(s)	41, 138, 430, 601, 643, 863
AluI	AGCT	6 cut(s)	41, 138, 430, 601, 643, 863
AlwI	GGATC	3 cut(s)	66, 100, 845
AlwNI	CAGNNNCTG	2 cut(s)	290, 601
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	731
ApeKI	GCWGC	2 cut(s)	454, 863
ApoI	RAATTY	3 cut(s)	265, 556, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	144, 265, 854
AsuII	TTCGAA	1 cut(s)	825
AvaI	CYCGRG	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	441, 850
BccI	CCATC	2 cut(s)	212, 661
BciT130I	CCWGG	2 cut(s)	277, 285
BclI	TGATCA	2 cut(s)	610, 844
BfaI	CTAG	2 cut(s)	224, 590
BfmI	CTRYAG	1 cut(s)	864
BisI	GCNGC	3 cut(s)	455, 515, 864
BlsI	GCNGC	3 cut(s)	456, 516, 865
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	277, 285
BmeT110I	CYCGRG	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	277, 285
Bpu10I	CCTNAGC	2 cut(s)	162, 435
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	849
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	2 cut(s)	674, 704
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	277, 285
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	674, 704
BseMII	CTCAG	3 cut(s)	348, 426, 507
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	441, 850
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	3 cut(s)	46, 225, 383
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	257, 561
BslFI	GGGAC	2 cut(s)	596, 762
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	596, 762
BsnI	GGCC	1 cut(s)	733
BsoBI	CYCGRG	1 cut(s)	240
Bsp119I	TTCGAA	1 cut(s)	825
Bsp143I	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
BspACI	CCGC	4 cut(s)	34, 155, 465, 514
BspANI	GGCC	1 cut(s)	733
BspCNI	CTCAG	3 cut(s)	349, 427, 506
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	2 cut(s)	370, 874
BspMAI	CTGCAG	1 cut(s)	868
BspPI	GGATC	3 cut(s)	66, 100, 845
BspQI	GCTCTTC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	825
BsrDI	GCAATG	2 cut(s)	674, 704
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
Bst2UI	CCWGG	2 cut(s)	277, 285
Bst4CI	ACNGT	3 cut(s)	231, 587, 712
Bst6I	CTCTTC	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	159, 432
BstDEI	CTNAG	4 cut(s)	162, 357, 435, 493
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	6 cut(s)	61, 108, 535, 613, 847, 853
BstMBI	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	277, 285
BstSCI	CCNGG	2 cut(s)	275, 283
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	441, 850
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	2 cut(s)	56, 873
Cac8I	GCNNGC	2 cut(s)	159, 432
CaiI	CAGNNNCTG	2 cut(s)	290, 601
CciI	TCATGA	2 cut(s)	370, 874
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	468, 497, 708
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	3 cut(s)	103, 371, 875
CviQI	GTAC	3 cut(s)	468, 497, 708
DdeI	CTNAG	4 cut(s)	162, 357, 435, 493
DpnI	GATC	6 cut(s)	60, 107, 534, 612, 846, 852
DpnII	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	318, 410, 485
Eco88I	CYCGRG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	275, 283
FaeI	CATG	3 cut(s)	106, 374, 878
FaqI	GGGAC	2 cut(s)	596, 762
FatI	CATG	3 cut(s)	102, 370, 874
FbaI	TGATCA	2 cut(s)	610, 844
Fnu4HI	GCNGC	3 cut(s)	455, 515, 864
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	455, 515, 864
FspBI	CTAG	2 cut(s)	224, 590
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	455, 515, 864
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	733
HapII	CCGG	2 cut(s)	257, 561
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	106, 374, 878
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	6 cut(s)	20, 197, 280, 293, 406, 686
HpaII	CCGG	2 cut(s)	257, 561
HphI	GGTGA	3 cut(s)	144, 265, 854
Hpy166II	GTNNAC	3 cut(s)	152, 211, 307
Hpy188I	TCNGA	5 cut(s)	123, 298, 504, 839, 860
Hpy8I	GTNNAC	3 cut(s)	152, 211, 307
HpyAV	CCTTC	4 cut(s)	120, 263, 368, 459
HpyCH4III	ACNGT	3 cut(s)	231, 587, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	4 cut(s)	162, 357, 435, 493
Hsp92II	CATG	3 cut(s)	106, 374, 878
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	2 cut(s)	610, 844
Kzo9I	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	3 cut(s)	382, 598, 640
Lsp1109I	GCAGC	2 cut(s)	441, 850
MaeI	CTAG	2 cut(s)	224, 590
MaeIII	GTNAC	2 cut(s)	140, 194
MalI	GATC	6 cut(s)	60, 107, 534, 612, 846, 852
MboI	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
MboII	GAAGA	5 cut(s)	180, 480, 648, 776, 839
MflI	RGATCY	1 cut(s)	850
MluCI	AATT	6 cut(s)	175, 265, 388, 477, 556, 569
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	430, 502, 744, 833
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	2 cut(s)	257, 561
MspR9I	CCNGG	2 cut(s)	277, 285
MvaI	CCWGG	2 cut(s)	277, 285
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
NlaIII	CATG	3 cut(s)	106, 374, 878
NmuCI	GTSAC	1 cut(s)	194
NsbI	TGCGCA	1 cut(s)	5
NspV	TTCGAA	1 cut(s)	825
PaeR7I	CTCGAG	1 cut(s)	240
PagI	TCATGA	2 cut(s)	370, 874
PciSI	GCTCTTC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	5 cut(s)	20, 280, 293, 406, 686
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	456, 516, 865
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	892
Psp6I	CCWGG	2 cut(s)	275, 283
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	2 cut(s)	275, 283
PstI	CTGCAG	1 cut(s)	868
PstNI	CAGNNNCTG	2 cut(s)	290, 601
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	138
RsaI	GTAC	3 cut(s)	469, 498, 709
RsaNI	GTAC	3 cut(s)	468, 497, 708
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	3 cut(s)	455, 515, 864
Sau3AI	GATC	6 cut(s)	58, 105, 532, 610, 844, 850
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	277, 285
SfcI	CTRYAG	1 cut(s)	864
Sfr274I	CTCGAG	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	825
SlaI	CTCGAG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	199, 240
SmoI	CTYRAG	2 cut(s)	199, 240
Sse9I	AATT	6 cut(s)	175, 265, 388, 477, 556, 569
SsiI	CCGC	4 cut(s)	34, 155, 465, 514
SspMI	CTAG	2 cut(s)	224, 590
StyD4I	CCNGG	2 cut(s)	275, 283
TaaI	ACNGT	3 cut(s)	231, 587, 712
TaqI	TCGA	2 cut(s)	241, 825
TasI	AATT	6 cut(s)	175, 265, 388, 477, 556, 569
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	5 cut(s)	20, 280, 293, 406, 686
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	2 cut(s)	56, 873
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	454, 863
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	382, 387, 515, 863
TspRI	CASTG	2 cut(s)	56, 873
Van91I	CCANNNNNTGG	1 cut(s)	55
XapI	RAATTY	3 cut(s)	265, 556, 569
XbaI	TCTAGA	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	224, 590
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.