Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001104

Physical Location & Seq

Genomic Coordinates Reverse (-)

27899275 .. 27901406

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGAGAAATGTTGTGAGTTCTGCAGAGCAATAAGGCCGGTTGTGTACTGTAAAGCTGATGCAGCACATCTTTGCCTATCTTGTGATGCAAAGATCCATTCGGCTAACACAGTTTTCAACCGTCATCAGCACACTGTCTTATGCGAAACCTGCCAAGGCCGCCCTGCTTATGTTCAGTGTTTGGATCACAGAATGTTTGTGTGCAATGACTGTGACAGGAGCCAGCACATATCATCTTCCCAACATCATCATAAACGCACTCTCCAGAGTTACACAGGTTGCCCATCTGCCAAGGATTTTGCAGCATTGTGGGGTTTCCAATCAGATGGGATAGATAACAAGACTCTATCCACTTCTTGTGGTTCTTGTGACTCGAGTGTGGTAAACTATGATATTCATGGGCAGTCTTGCTCACAAATTGAATGTCTTTCAGGTGGTGCTCAGTTTGAAATGGGATCGACCAGTAAACAGAAGATATTTTGTGAAGGTGAAGAGCATAAGAAGACTAGTTTTATTCTGCATCAGATACTTGACTTGGAAAGGATGCAGCTAGCCGAAGGGAATACCCCTTCAACACAAAGTGACCTATCTTCTTCAGCACATAATACTTGGAAGAGCTTTGATGAGAACCTTGATCGGCATTTACAACGTTGTGAGACTACTGATACTAACTTTCAGCTAAAGGAGAGTCCGCTTCAGAATCTGAAAGATGATCCTTTGCCATTTCCATTTTCTCAGTCGGATCATTTAGCATCAAATTCAACTATTGGAATTCCGTTGCAGACAGATTCCATTTGGCAGTACAGAAGTCCGGTCCAAAATAGTCAGCTGTGGTCTCAAAATATGCAAGACCTTGGGGTTTGTGAAGAGCTTGTTTGTCGTGATGATTTCAATATACCTGATGTTGATTTAACATTCCGAAATTTTGAGGAAATATTTGGTGGTGATCAAGATCCTACCAGAGTGCTGCATGATGATAAAGATGTCTCGTATTCCTCAGTAGAGAGGAACATGTCCCTCGATAAATCAGACGACTGCAATTCAAGAGTAATGGTGGATGCATCAGTGGCTTCATCTATGTACCTTACTCAGCCTGCAAACTTTGACAAAGCATGTAACAAAGTTGAAAACGTCTCGGGAAGCATGGATATTCCACCATCTTCTTCAACTTTATCATTCTCTGTGTCAAGGAACTTCACCATTAACAACGAAGCAGATTGCCATGATACAGTACCTTCAAGCACTTCACCTGATGTGGATGCTGGACAGCTGCAAGTCAGAGCAAATTCACTGATGAGGTACAAAGAGAAGAAGCAATCTCGACTAACTGAGAAGAAATTTCCATATTCACCACGAAAAGCTACAGTTGATGTACATAGGCGGGGAAGAGGCCGCATTGTTAAGACAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

472

Amino Acids

52.96

Weight (kDa)

5.63

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	427 - 469	2.9e-07	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68190 AT1G68190 AT1G68190
fragaria_vesca	FvH4_4g26540 FvH4_4g26540 FvH4_4g26550
malus_domestica	MD13G1034200.v1.1 MD13G1034400.v1.1 MD16G1035900.v1.1
prunus_persica	Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318100_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1 Prupe.1G318400_v2.0.a1
pyrus_communis	pycom13g02950 pycom13g02960 pycom16g03080
rosa_chinensis	RchiOBHm_Chr4g0434171 RchiOBHm_Chr4g0434181 RchiOBHm_Chr4g0434191 RchiOBHm_Chr4g0434201
rosa_laevigata	RLG00000006693 RLG00000006694 RLG00000006695
rosa_multiflora	Rmu_sc0000459.1_g000002 Rmu_sc0000459.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375560 Rroxscaffold_5G00375570 Rroxscaffold_5G00375580
rosa_rugosa	Rorug04G0274800 Rorug04G0274900 Rorug04G0275000.1 Rorug04G0275100 Rorug04G0275200 Rorug04G0275300 Rorug04G0275400
rosa_samantha	Rh4AG329700 Rh4AG329800 Rh4AG329900 Rh4AG330000 Rh4BG337300 Rh4BG337400 Rh4BG337500 Rh4BG337600 Rh4CG352700 Rh4CG352800 Rh4CG352900 Rh4CG353000 Rh4DG333300 Rh4DG333400 Rh4DG333500 Rh4DG333600
rosa_wichuraiana	Rw0G007010 Rw0G007020 Rw4G028590 Rw4G028600 Rw4G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	4 cut(s)	160, 692, 1381, 1393
AclI	AACGTT	1 cut(s)	649
AclWI	GGATC	6 cut(s)	88, 192, 463, 707, 750, 947
AcsI	RAATTY	5 cut(s)	757, 771, 922, 1285, 1337
AcuI	CTGAAG	2 cut(s)	579, 680
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	6 cut(s)	47, 803, 1082, 1233, 1301, 1374
AflIII	ACRYGT	1 cut(s)	1011
AhlI	ACTAGT	1 cut(s)	506
AluBI	AGCT	8 cut(s)	56, 550, 618, 679, 829, 871, 1270, 1361
AluI	AGCT	8 cut(s)	56, 550, 618, 679, 829, 871, 1270, 1361
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	4 cut(s)	650, 840, 991, 1138
AlwI	GGATC	6 cut(s)	88, 192, 463, 707, 750, 947
AlwNI	CAGNNNCTG	1 cut(s)	703
Ama87I	CYCGRG	2 cut(s)	373, 1135
AoxI	GGCC	3 cut(s)	35, 157, 1390
ApeKI	GCWGC	5 cut(s)	62, 302, 547, 967, 1270
ApoI	RAATTY	5 cut(s)	757, 771, 922, 1285, 1337
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AspS9I	GGNCC	1 cut(s)	814
AsuHPI	GGTGA	5 cut(s)	500, 956, 1189, 1239, 1341
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	2 cut(s)	373, 1135
AvaII	GGWCC	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	74, 314, 559, 954, 1257
BccI	CCATC	3 cut(s)	292, 320, 1165
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	4 cut(s)	650, 840, 991, 1138
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	2 cut(s)	507, 551
BfmI	CTRYAG	2 cut(s)	22, 1362
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	7 cut(s)	63, 160, 303, 548, 968, 1271, 1393
BlsI	GCNGC	7 cut(s)	64, 161, 304, 549, 969, 1272, 1394
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	2 cut(s)	373, 1135
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	1 cut(s)	221
BmsI	GCATC	8 cut(s)	49, 76, 529, 534, 761, 1048, 1070, 1249
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	154, 291, 853
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	951
BseDI	CCNNGG	3 cut(s)	154, 291, 853
BseGI	GGATG	3 cut(s)	549, 1063, 1264
BseJI	GATNNNNATC	1 cut(s)	951
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	5 cut(s)	455, 749, 1011, 1103, 1320
BseNI	ACTGG	1 cut(s)	462
BseXI	GCAGC	5 cut(s)	74, 314, 559, 954, 1257
BshFI	GGCC	3 cut(s)	37, 159, 1392
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	2 cut(s)	373, 1135
BsiSI	CCGG	2 cut(s)	38, 812
BslFI	GGGAC	1 cut(s)	1000
BsmAI	GTCTC	4 cut(s)	650, 840, 991, 1138
BsmBI	CGTCTC	1 cut(s)	1138
BsmFI	GGGAC	1 cut(s)	1000
BsnI	GGCC	3 cut(s)	37, 159, 1392
Bso31I	GGTCTC	1 cut(s)	840
BsoBI	CYCGRG	2 cut(s)	373, 1135
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	1372
Bsp143I	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
BspACI	CCGC	4 cut(s)	160, 692, 1381, 1393
BspANI	GGCC	3 cut(s)	37, 159, 1392
BspCNI	CTCAG	5 cut(s)	454, 748, 1010, 1102, 1321
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	6 cut(s)	88, 192, 463, 707, 750, 947
BspQI	GCTCTTC	3 cut(s)	486, 608, 861
BspTNI	GGTCTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	1372
BsrI	ACTGG	1 cut(s)	462
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	154, 291, 853
BssMI	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
BssT1I	CCWWGG	3 cut(s)	154, 291, 853
Bst4CI	ACNGT	7 cut(s)	50, 112, 122, 136, 212, 1231, 1366
Bst6I	CTCTTC	4 cut(s)	486, 608, 861, 1381
BstAUI	TGTACA	1 cut(s)	1372
BstC8I	GCNNGC	3 cut(s)	224, 552, 1095
BstDEI	CTNAG	5 cut(s)	441, 735, 997, 1089, 1329
BstF5I	GGATG	3 cut(s)	549, 1063, 1264
BstKTI	GATC	8 cut(s)	96, 187, 458, 637, 715, 745, 949, 955
BstMAI	GTCTC	4 cut(s)	650, 840, 991, 1138
BstMBI	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 150, 159, 1067
BstNSI	RCATGY	2 cut(s)	1015, 1116
BstSFI	CTRYAG	2 cut(s)	22, 1362
BstV1I	GCAGC	5 cut(s)	74, 314, 559, 954, 1257
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	93, 952
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	2 cut(s)	93, 952
BsuRI	GGCC	3 cut(s)	37, 159, 1392
BtsCI	GGATG	3 cut(s)	549, 1063, 1264
BtsIMutI	CAGTG	4 cut(s)	132, 182, 1071, 1289
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	224, 552, 1095
CaiI	CAGNNNCTG	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	814
Csp6I	GTAC	6 cut(s)	46, 802, 1081, 1232, 1300, 1373
CviAII	CATG	6 cut(s)	398, 971, 1012, 1113, 1144, 1223
CviQI	GTAC	6 cut(s)	46, 802, 1081, 1232, 1300, 1373
DdeI	CTNAG	5 cut(s)	441, 735, 997, 1089, 1329
DpnI	GATC	8 cut(s)	95, 186, 457, 636, 714, 744, 948, 954
DpnII	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
DraIII	CACNNNGTG	1 cut(s)	581
Eam1104I	CTCTTC	4 cut(s)	486, 608, 861, 1381
EarI	CTCTTC	4 cut(s)	486, 608, 861, 1381
Eco130I	CCWWGG	3 cut(s)	154, 291, 853
Eco31I	GGTCTC	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	579, 680
Eco88I	CYCGRG	2 cut(s)	373, 1135
EcoRI	GAATTC	1 cut(s)	771
EcoT14I	CCWWGG	3 cut(s)	154, 291, 853
EcoT22I	ATGCAT	1 cut(s)	1063
ErhI	CCWWGG	3 cut(s)	154, 291, 853
Esp3I	CGTCTC	1 cut(s)	1138
FaeI	CATG	6 cut(s)	401, 974, 1015, 1116, 1147, 1226
FaqI	GGGAC	1 cut(s)	1000
FatI	CATG	6 cut(s)	397, 970, 1011, 1112, 1143, 1222
FauI	CCCGC	1 cut(s)	1374
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	7 cut(s)	63, 160, 303, 548, 968, 1271, 1393
FokI	GGATG	3 cut(s)	556, 1070, 1271
Fsp4HI	GCNGC	7 cut(s)	63, 160, 303, 548, 968, 1271, 1393
FspBI	CTAG	2 cut(s)	507, 551
GluI	GCNGC	7 cut(s)	63, 160, 303, 548, 968, 1271, 1393
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	37, 159, 1392
HapII	CCGG	2 cut(s)	38, 812
Hin1II	CATG	6 cut(s)	401, 974, 1015, 1116, 1147, 1226
HinfI	GANTC	5 cut(s)	343, 371, 688, 700, 788
HpaII	CCGG	2 cut(s)	38, 812
HphI	GGTGA	5 cut(s)	500, 956, 1189, 1239, 1341
Hpy166II	GTNNAC	3 cut(s)	46, 385, 467
Hpy188I	TCNGA	8 cut(s)	325, 525, 699, 705, 742, 920, 1030, 1280
Hpy188III	TCNNGA	6 cut(s)	265, 881, 950, 1044, 1137, 1320
Hpy8I	GTNNAC	3 cut(s)	46, 385, 467
HpyAV	CCTTC	4 cut(s)	479, 551, 579, 1245
HpyCH4III	ACNGT	7 cut(s)	50, 112, 122, 136, 212, 1231, 1366
HpyCH4IV	ACGT	2 cut(s)	649, 1131
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 150, 159, 1067
HpyF3I	CTNAG	5 cut(s)	441, 735, 997, 1089, 1329
HpySE526I	ACGT	2 cut(s)	649, 1131
Hsp92II	CATG	6 cut(s)	401, 974, 1015, 1116, 1147, 1226
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
LguI	GCTCTTC	3 cut(s)	486, 608, 861
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	5 cut(s)	74, 314, 559, 954, 1257
LweI	GCATC	8 cut(s)	49, 76, 529, 534, 761, 1048, 1070, 1249
MaeI	CTAG	2 cut(s)	507, 551
MaeII	ACGT	2 cut(s)	649, 1131
MaeIII	GTNAC	5 cut(s)	212, 269, 368, 581, 1115
MalI	GATC	8 cut(s)	95, 186, 457, 636, 714, 744, 948, 954
MboI	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
MflI	RGATCY	2 cut(s)	93, 952
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	7 cut(s)	417, 757, 771, 922, 1039, 1285, 1337
MlyI	GAGTC	3 cut(s)	337, 365, 697
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	6 cut(s)	922, 999, 1006, 1028, 1290, 1382
Mph1103I	ATGCAT	1 cut(s)	1063
MseI	TTAA	3 cut(s)	911, 1203, 1401
MspA1I	CMGCKG	2 cut(s)	829, 1270
MspI	CCGG	2 cut(s)	38, 812
MwoI	GCNNNNNNNGC	4 cut(s)	62, 150, 159, 1067
NdeII	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	6 cut(s)	401, 974, 1015, 1116, 1147, 1226
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	3 cut(s)	212, 368, 581
NsiI	ATGCAT	1 cut(s)	1063
NspI	RCATGY	2 cut(s)	1015, 1116
PaeR7I	CTCGAG	1 cut(s)	373
PciI	ACATGT	1 cut(s)	1011
PciSI	GCTCTTC	3 cut(s)	486, 608, 861
PfeI	GAWTC	2 cut(s)	700, 788
PkrI	GCNGC	7 cut(s)	64, 161, 304, 549, 969, 1272, 1394
PleI	GAGTC	3 cut(s)	337, 365, 696
PpsI	GAGTC	3 cut(s)	337, 365, 696
PscI	ACATGT	1 cut(s)	1011
Psp1406I	AACGTT	1 cut(s)	649
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	814
PspXI	VCTCGAGB	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	2 cut(s)	93, 952
PvuII	CAGCTG	2 cut(s)	829, 1270
RsaI	GTAC	6 cut(s)	47, 803, 1082, 1233, 1301, 1374
RsaNI	GTAC	6 cut(s)	46, 802, 1081, 1232, 1300, 1373
SapI	GCTCTTC	3 cut(s)	486, 608, 861
SaqAI	TTAA	3 cut(s)	911, 1203, 1401
SatI	GCNGC	7 cut(s)	63, 160, 303, 548, 968, 1271, 1393
Sau3AI	GATC	8 cut(s)	93, 184, 455, 634, 712, 742, 946, 952
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	3 cut(s)	337, 365, 697
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	8 cut(s)	49, 76, 529, 534, 761, 1048, 1070, 1249
SfcI	CTRYAG	2 cut(s)	22, 1362
Sfr274I	CTCGAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	814
SlaI	CTCGAG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	7 cut(s)	417, 757, 771, 922, 1039, 1285, 1337
SsiI	CCGC	4 cut(s)	160, 692, 1381, 1393
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	2 cut(s)	507, 551
StyI	CCWWGG	3 cut(s)	154, 291, 853
TaaI	ACNGT	7 cut(s)	50, 112, 122, 136, 212, 1231, 1366
TaiI	ACGT	2 cut(s)	652, 1134
TaqI	TCGA	4 cut(s)	374, 458, 1020, 1321
TasI	AATT	7 cut(s)	417, 757, 771, 922, 1039, 1285, 1337
TatI	WGTACW	3 cut(s)	45, 801, 1372
TauI	GCSGC	2 cut(s)	162, 1395
TfiI	GAWTC	2 cut(s)	700, 788
Tru1I	TTAA	3 cut(s)	911, 1203, 1401
Tru9I	TTAA	3 cut(s)	911, 1203, 1401
TscAI	CASTG	4 cut(s)	139, 182, 1071, 1296
TseFI	GTSAC	3 cut(s)	212, 368, 581
TseI	GCWGC	5 cut(s)	62, 302, 547, 967, 1270
Tsp45I	GTSAC	3 cut(s)	212, 368, 581
TspDTI	ATGAA	2 cut(s)	386, 1062
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	4 cut(s)	139, 182, 1071, 1296
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	5 cut(s)	757, 771, 922, 1285, 1337
XceI	RCATGY	2 cut(s)	1015, 1116
XhoI	CTCGAG	1 cut(s)	373
XspI	CTAG	2 cut(s)	507, 551
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.