AT2G38780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000939
Physical Location & Seq
Forward (+)
16210816 .. 16215521
4706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38780.3

Sequence Viewer

Length: 1398 bp
ATGGGTGGTGATGTTGCATCCACGAGTCCACAAGTCTGTGAAAACATTGCACTCCAAAAATGGCTAACCAGCTCTTCTCTCCACCAAACCATGGCTTCTTTCAACCACTCTTGGCTCTCTTCTCCACTCACCGAAACTCCCGCTTTCTTTTTTTCTCCATCTCAACACCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAGCAACTCGTCCTCACCGGACCGCTCGTCAGAGGTTGAGCTCGATGTGGATCCGGTGAAGCTCGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCAGAGCAAAAAAAACCAGAGAAAAATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGCTATGCAAAAAGCCAATGATTATAAGAAAAGGAAAGGACTTGGAACTGATGCTGTCGCAAAAGCTAAACCCAGTAATACAGATCAAAGTTTCGTTAGATTAGCAAATAAGGTTGTTGAAGATAATGATGTTAAGAAGAAAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCACGAGGGGGCTTCCAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTACCTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTGAGCAAGAAGGAGATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTTTCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGGATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAAAAGACAAAAAAATTGCTCATAGCCTACAAGGAATCACTCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGAAGGCAATAGACGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCATACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATGAGAAGCTTATTTCCCATCCAAACCCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCAGTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTTTGCTGAAGGAAACACTGGTTATCAGGACTACTTTGAAGCCTTTGTTGAAGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGAAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGCTTCTCCGATTCTAATGGTCTTCATTGTAGCTGCACAGAGAGGGTATACACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

465

Amino Acids

51.87

Weight (kDa)

8.54

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 291, 390
AccB7I CCANNNNNTGG 1 cut(s) 91
AccBSI CCGCTC 2 cut(s) 228, 352
AccI GTMKAC 1 cut(s) 1388
AciI CCGC 7 cut(s) 141, 226, 350, 581, 665, 819, 1040
AclWI GGATC 3 cut(s) 248, 261, 893
AcuI CTGAAG 4 cut(s) 633, 843, 1208, 1233
AfiI CCNNNNNNNGG 3 cut(s) 91, 802, 1130
AgsI TTSAA 8 cut(s) 103, 181, 274, 485, 514, 1018, 1244, 1256
AhdI GACNNNNNGTC 1 cut(s) 229
Alw21I GWGCWC 2 cut(s) 246, 566
Alw26I GTCTC 4 cut(s) 523, 612, 809, 1310
AlwI GGATC 3 cut(s) 248, 261, 893
Ama87I CYCGRG 1 cut(s) 1129
ApeKI GCWGC 2 cut(s) 365, 1373
AspLEI GCGC 2 cut(s) 1098, 1279
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 3 cut(s) 801, 1130, 1131
AsuHPI GGTGA 5 cut(s) 20, 121, 210, 271, 659
AsuII TTCGAA 1 cut(s) 1075
AvaI CYCGRG 1 cut(s) 1129
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 627
BamHI GGATCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BauI CACGAG 2 cut(s) 22, 565
BbsI GAAGAC 1 cut(s) 1354
Bbv12I GWGCWC 2 cut(s) 246, 566
BbvI GCAGC 2 cut(s) 352, 1360
BccI CCATC 3 cut(s) 166, 692, 1128
BcnI CCSGG 3 cut(s) 801, 1130, 1131
BcoDI GTCTC 4 cut(s) 523, 612, 809, 1310
BfaI CTAG 2 cut(s) 756, 1037
BisI GCNGC 4 cut(s) 350, 366, 1041, 1374
BlsI GCNGC 4 cut(s) 351, 367, 1042, 1375
Bme1390I CCNGG 3 cut(s) 801, 1130, 1131
Bme18I GGWCC 1 cut(s) 223
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 1129
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 3 cut(s) 801, 1130, 1131
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 3 cut(s) 26, 406, 1173
BmuI ACTGGG 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 1354
BplI GAGNNNNNCTC 2 cut(s) 929, 961
BpmI CTGGAG 1 cut(s) 505
Bpu14I TTCGAA 1 cut(s) 1075
BpuEI CTTGAG 2 cut(s) 935, 953
BpuMI CCSGG 3 cut(s) 801, 1130, 1131
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 3 cut(s) 90, 800, 1129
BsaWI WCCGGW 2 cut(s) 220, 256
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 802, 1130
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 438, 1228
Bse21I CCTNAGG 1 cut(s) 627
Bse3DI GCAATG 2 cut(s) 45, 1182
Bse8I GATNNNNATC 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 90, 800, 1129
BseGI GGATG 2 cut(s) 17, 1120
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 3 cut(s) 91, 802, 1130
BseMI GCAATG 2 cut(s) 45, 1182
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 2 cut(s) 438, 1228
BseXI GCAGC 2 cut(s) 352, 1360
BsgI GTGCAG 1 cut(s) 1359
Bsh1285I CGRYCG 1 cut(s) 800
BsiEI CGRYCG 1 cut(s) 800
BsiHKAI GWGCWC 2 cut(s) 246, 566
BsiHKCI CYCGRG 1 cut(s) 1129
BsiSI CCGG 5 cut(s) 221, 257, 333, 800, 1130
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 3 cut(s) 91, 802, 1130
BsmAI GTCTC 4 cut(s) 523, 612, 809, 1310
BsmFI GGGAC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 1129
Bsp119I TTCGAA 1 cut(s) 1075
Bsp1286I GDGCHC 2 cut(s) 246, 566
Bsp143I GATC 3 cut(s) 253, 448, 898
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 7 cut(s) 141, 226, 350, 581, 665, 819, 1040
BspCNI CTCAG 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 3 cut(s) 248, 261, 893
BspQI GCTCTTC 2 cut(s) 79, 554
BspT104I TTCGAA 1 cut(s) 1075
BspTNI GGTCTC 1 cut(s) 809
BsrBI CCGCTC 2 cut(s) 228, 352
BsrDI GCAATG 2 cut(s) 45, 1182
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 2 cut(s) 438, 1228
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 3 cut(s) 90, 800, 1129
BssMI GATC 3 cut(s) 253, 448, 898
BssNAI GTATAC 1 cut(s) 1389
BssSI CACGAG 2 cut(s) 22, 565
BssT1I CCWWGG 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 1389
Bst2BI CACGAG 2 cut(s) 22, 565
Bst6I CTCTTC 4 cut(s) 79, 124, 554, 819
BstBI TTCGAA 1 cut(s) 1075
BstC8I GCNNGC 2 cut(s) 267, 334
BstDEI CTNAG 2 cut(s) 627, 768
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 17, 1120
BstHHI GCGC 2 cut(s) 1098, 1279
BstKTI GATC 3 cut(s) 256, 451, 901
BstMAI GTCTC 4 cut(s) 523, 612, 809, 1310
BstMBI GATC 3 cut(s) 253, 448, 898
BstMCI CGRYCG 1 cut(s) 800
BstNSI RCATGY 1 cut(s) 1102
BstSCI CCNGG 3 cut(s) 799, 1128, 1129
BstV1I GCAGC 2 cut(s) 352, 1360
BstV2I GAAGAC 1 cut(s) 1354
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 1389
Bsu36I CCTNAGG 1 cut(s) 627
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 17, 1120
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 3 cut(s) 1055, 1221, 1393
Cac8I GCNNGC 2 cut(s) 267, 334
CfoI GCGC 2 cut(s) 1098, 1279
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 223
Cfr9I CCCGGG 1 cut(s) 1129
CpoI CGGWCCG 1 cut(s) 223
CspI CGGWCCG 1 cut(s) 223
CviAII CATG 7 cut(s) 91, 535, 735, 1000, 1031, 1099, 1159
DdeI CTNAG 2 cut(s) 627, 768
DpnI GATC 3 cut(s) 255, 450, 900
DpnII GATC 3 cut(s) 253, 448, 898
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 4 cut(s) 79, 124, 554, 819
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 4 cut(s) 79, 124, 554, 819
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 809
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 4 cut(s) 633, 843, 1208, 1233
Eco81I CCTNAGG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 1129
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 7 cut(s) 94, 538, 738, 1003, 1034, 1102, 1162
FaqI GGGAC 1 cut(s) 597
FatI CATG 7 cut(s) 90, 534, 734, 999, 1030, 1098, 1158
FauI CCCGC 2 cut(s) 148, 574
FblI GTMKAC 1 cut(s) 1388
Fnu4HI GCNGC 4 cut(s) 350, 366, 1041, 1374
FokI GGATG 2 cut(s) 4, 1107
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 4 cut(s) 350, 366, 1041, 1374
FspBI CTAG 2 cut(s) 756, 1037
GlaI GCGC 2 cut(s) 1097, 1278
GluI GCNGC 4 cut(s) 350, 366, 1041, 1374
GsuI CTGGAG 1 cut(s) 505
HapII CCGG 5 cut(s) 221, 257, 333, 800, 1130
HhaI GCGC 2 cut(s) 1098, 1279
Hin1II CATG 7 cut(s) 94, 538, 738, 1003, 1034, 1102, 1162
Hin6I GCGC 2 cut(s) 1096, 1277
HinP1I GCGC 2 cut(s) 1096, 1277
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 3 cut(s) 285, 975, 1109
HinfI GANTC 7 cut(s) 25, 806, 878, 956, 1067, 1333, 1351
HpaII CCGG 5 cut(s) 221, 257, 333, 800, 1130
HphI GGTGA 5 cut(s) 20, 121, 210, 271, 659
Hpy166II GTNNAC 3 cut(s) 29, 601, 1389
Hpy188I TCNGA 8 cut(s) 197, 204, 235, 307, 709, 797, 887, 1350
Hpy188III TCNNGA 4 cut(s) 611, 1018, 1064, 1232
Hpy8I GTNNAC 3 cut(s) 29, 601, 1389
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 7 cut(s) 608, 686, 780, 919, 1183, 1208, 1286
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 5 cut(s) 17, 50, 373, 1048, 1376
HpyF3I CTNAG 2 cut(s) 627, 768
HpySE526I ACGT 1 cut(s) 773
Hsp92II CATG 7 cut(s) 94, 538, 738, 1003, 1034, 1102, 1162
HspAI GCGC 2 cut(s) 1096, 1277
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
Kzo9I GATC 3 cut(s) 253, 448, 898
LguI GCTCTTC 2 cut(s) 79, 554
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 2 cut(s) 352, 1360
LweI GCATC 3 cut(s) 26, 406, 1173
MaeI CTAG 2 cut(s) 756, 1037
MaeII ACGT 1 cut(s) 773
MalI GATC 3 cut(s) 255, 450, 900
MbiI CCGCTC 2 cut(s) 228, 352
MboI GATC 3 cut(s) 253, 448, 898
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 246, 566
MluCI AATT 4 cut(s) 344, 509, 857, 1267
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 820
MroNI GCCGGC 1 cut(s) 332
MseI TTAA 3 cut(s) 360, 498, 1194
MspA1I CMGCKG 2 cut(s) 581, 821
MspI CCGG 5 cut(s) 221, 257, 333, 800, 1130
MspR9I CCNGG 3 cut(s) 801, 1130, 1131
NaeI GCCGGC 1 cut(s) 334
NciI CCSGG 3 cut(s) 801, 1130, 1131
NcoI CCATGG 1 cut(s) 90
NdeII GATC 3 cut(s) 253, 448, 898
NgoMIV GCCGGC 1 cut(s) 332
NlaIII CATG 7 cut(s) 94, 538, 738, 1003, 1034, 1102, 1162
NlaIV GGNNCC 1 cut(s) 255
NspI RCATGY 1 cut(s) 1102
NspV TTCGAA 1 cut(s) 1075
PciSI GCTCTTC 2 cut(s) 79, 554
PdiI GCCGGC 1 cut(s) 334
PfeI GAWTC 6 cut(s) 806, 878, 956, 1067, 1333, 1351
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 4 cut(s) 351, 367, 1042, 1375
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PsiI TTATAA 2 cut(s) 291, 390
Psp124BI GAGCTC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 253
Rsr2I CGGWCCG 1 cut(s) 223
RsrII CGGWCCG 1 cut(s) 223
SacI GAGCTC 1 cut(s) 246
SapI GCTCTTC 2 cut(s) 79, 554
SaqAI TTAA 3 cut(s) 360, 498, 1194
SatI GCNGC 4 cut(s) 350, 366, 1041, 1374
Sau3AI GATC 3 cut(s) 253, 448, 898
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 3 cut(s) 801, 1130, 1131
SduI GDGCHC 2 cut(s) 246, 566
SfaNI GCATC 3 cut(s) 26, 406, 1173
SfuI TTCGAA 1 cut(s) 1075
SinI GGWCC 1 cut(s) 223
SmaI CCCGGG 1 cut(s) 1131
SmlI CTYRAG 2 cut(s) 914, 968
SmoI CTYRAG 2 cut(s) 914, 968
Sse9I AATT 4 cut(s) 344, 509, 857, 1267
SsiI CCGC 7 cut(s) 141, 226, 350, 581, 665, 819, 1040
SspMI CTAG 2 cut(s) 756, 1037
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 799, 1128, 1129
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 776
TaqI TCGA 4 cut(s) 246, 299, 1075, 1202
TasI AATT 4 cut(s) 344, 509, 857, 1267
TauI GCSGC 2 cut(s) 352, 1043
TfiI GAWTC 6 cut(s) 806, 878, 956, 1067, 1333, 1351
Tru1I TTAA 3 cut(s) 360, 498, 1194
Tru9I TTAA 3 cut(s) 360, 498, 1194
TscAI CASTG 2 cut(s) 1055, 1228
TseI GCWGC 2 cut(s) 365, 1373
TspDTI ATGAA 5 cut(s) 523, 1005, 1019, 1147, 1354
TspMI CCCGGG 1 cut(s) 1129
TspRI CASTG 2 cut(s) 1055, 1228
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 1 cut(s) 1102
XmaI CCCGGG 1 cut(s) 1129
XmiI GTMKAC 1 cut(s) 1388
XspI CTAG 2 cut(s) 756, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.