Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Reverse (-)

18330765 .. 18331990

Gene Structure 1226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATTTTGTGGGACTTGGGTTTGCTACTAAGAAGGAGGGTAGAACACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGGAAGAAAAAGCTGCTAAGAAGGAGCGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACAGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGGTAATGCTTCTTGCACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.95

Weight (kDa)

7.83

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	186, 314
AcuI	CTGAAG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	237, 313, 439
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	4 cut(s)	56, 254, 328, 388
AluI	AGCT	4 cut(s)	56, 254, 328, 388
AlwI	GGATC	2 cut(s)	186, 314
ApeKI	GCWGC	3 cut(s)	143, 254, 287
AsuHPI	GGTGA	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	155, 241, 274
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	176
BisI	GCNGC	3 cut(s)	144, 255, 288
BlsI	GCNGC	3 cut(s)	145, 256, 289
Bme1390I	CCNGG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	129
Bse21I	CCTNAGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	364
BseMII	CTCAG	3 cut(s)	93, 101, 343
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	155, 241, 274
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	27, 137
BsmFI	GGGAC	2 cut(s)	27, 137
Bsp143I	GATC	2 cut(s)	178, 319
BspCNI	CTCAG	3 cut(s)	94, 100, 342
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	186, 314
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	178, 319
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	5 cut(s)	30, 87, 102, 258, 329
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	2 cut(s)	181, 322
BstMBI	GATC	2 cut(s)	178, 319
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	155, 241, 274
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 346
Cac8I	GCNNGC	1 cut(s)	54
CviAII	CATG	2 cut(s)	204, 458
CviJI	RGCY	8 cut(s)	56, 146, 157, 190, 254, 309, 328, 388
CviKI_1	RGCY	8 cut(s)	56, 146, 157, 190, 254, 309, 328, 388
DdeI	CTNAG	5 cut(s)	30, 87, 102, 258, 329
DpnI	GATC	2 cut(s)	180, 321
DpnII	GATC	2 cut(s)	178, 319
Eco57I	CTGAAG	1 cut(s)	410
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	207, 461
FaiI	YATR	4 cut(s)	205, 411, 422, 459
FaqI	GGGAC	2 cut(s)	27, 137
FatI	CATG	2 cut(s)	203, 457
Fnu4HI	GCNGC	3 cut(s)	144, 255, 288
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	3 cut(s)	144, 255, 288
GluI	GCNGC	3 cut(s)	144, 255, 288
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	207, 461
HinfI	GANTC	3 cut(s)	125, 210, 365
HphI	GGTGA	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	332, 383
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	28, 256, 385
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	2 cut(s)	143, 455
HpyF3I	CTNAG	5 cut(s)	30, 87, 102, 258, 329
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	207, 461
Kzo9I	GATC	2 cut(s)	178, 319
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	42, 66, 74, 114, 142, 161, 188, 232
Lsp1109I	GCAGC	3 cut(s)	155, 241, 274
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	362, 429
MalI	GATC	2 cut(s)	180, 321
MboI	GATC	2 cut(s)	178, 319
MboII	GAAGA	3 cut(s)	192, 257, 358
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	2 cut(s)	133, 278
MlyI	GAGTC	3 cut(s)	119, 219, 359
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	31, 97, 168
MseI	TTAA	2 cut(s)	353, 463
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	178, 319
NlaIII	CATG	2 cut(s)	207, 461
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	461
PciI	ACATGT	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	145, 256, 289
PleI	GAGTC	3 cut(s)	119, 218, 359
PpsI	GAGTC	3 cut(s)	119, 218, 359
PscI	ACATGT	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	353, 463
SatI	GCNGC	3 cut(s)	144, 255, 288
Sau3AI	GATC	2 cut(s)	178, 319
SchI	GAGTC	3 cut(s)	119, 219, 359
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	8 cut(s)	58, 108, 198, 256, 330, 381, 390, 444
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	133, 278
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	381
TasI	AATT	2 cut(s)	133, 278
Tru1I	TTAA	2 cut(s)	353, 463
Tru9I	TTAA	2 cut(s)	353, 463
TscAI	CASTG	2 cut(s)	54, 346
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	143, 254, 287
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	192, 389
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	54, 346
XceI	RCATGY	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.