Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002824.1

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Reverse (-)

177320 .. 178310

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002824.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggcaatggcttgccttcaaccttcttcatggctctcttcccgacccactctctttccctcctcctcaaagccccacccttcaaagctcttcttttctctcaacccacccaatcccaatcccaatcccaattccaatgccgaatccgaaaccacgacgtccccagttgacccgccaagtcctgggaatgccgaattgcctgctgctgttaagactgcaatggagagagctagagagtataagcagaagaagaaagggactaacaaatcttcagcaaatgagaaaagcaaggcaaaattgtcagtgtcgggcatggattttgtgggacttgggtttgccgataagaaggagggcagagcactgccagctgggttggttccaatcgcagacgattttgctcagggcaacttgcctgaggttgagattattgttggggactccagtaatttcggtgcagccacacccaagcctcaaggagatgatcccccggatctttacaagccaaaggtttcttcatggggagtctttcccagacccaatgacatttcaaaaacgtttggtggtgggcgagttatacgccccggggaagtgcttgaaacgcaggaagaaaaagctgctaaagtggaacgaacaagacaattagttgctgcttacaacactaaaatgggcttgaacattgatccgaagctcagattggactgtgagaaggtttgcttcgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

25.78

Weight (kDa)

9.03

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	182
AciI	CCGC	1 cut(s)	173
AclI	AACGTT	1 cut(s)	554
AclWI	GGATC	3 cut(s)	476, 498, 674
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	20, 84, 549, 596, 673
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	4 cut(s)	496, 528, 677, 709
AluBI	AGCT	5 cut(s)	88, 230, 368, 614, 688
AluI	AGCT	5 cut(s)	88, 230, 368, 614, 688
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	476, 498, 674
Ama87I	CYCGRG	1 cut(s)	581
ApeKI	GCWGC	4 cut(s)	203, 455, 614, 647
AsuC2I	CCSGG	3 cut(s)	488, 582, 583
AvaI	CYCGRG	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	190, 467, 601, 634
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	183
BcnI	CCSGG	3 cut(s)	488, 582, 583
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	4 cut(s)	204, 456, 615, 648
BlsI	GCNGC	4 cut(s)	205, 457, 616, 649
Bme1390I	CCNGG	4 cut(s)	183, 488, 582, 583
BmeT110I	CYCGRG	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	4 cut(s)	183, 488, 582, 583
BmrI	ACTGGG	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	456
BpuMI	CCSGG	3 cut(s)	488, 582, 583
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	5 cut(s)	182, 486, 580, 581, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	164, 441
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	2 cut(s)	12, 225
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	5 cut(s)	182, 486, 580, 581, 582
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	2 cut(s)	12, 225
BseMII	CTCAG	3 cut(s)	405, 413, 703
BseNI	ACTGG	2 cut(s)	164, 441
BseRI	GAGGAG	2 cut(s)	52, 55
BseXI	GCAGC	4 cut(s)	190, 467, 601, 634
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	488, 582
BslFI	GGGAC	4 cut(s)	145, 271, 339, 449
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	4 cut(s)	145, 271, 339, 449
BsmI	GAATGC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	481, 490, 679
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	3 cut(s)	406, 412, 702
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	3 cut(s)	476, 498, 674
BspQI	GCTCTTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	12, 225
BsrI	ACTGG	2 cut(s)	164, 441
BssECI	CCNNGG	5 cut(s)	182, 486, 580, 581, 582
BssMI	GATC	3 cut(s)	481, 490, 679
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	2 cut(s)	43, 95
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	13, 201, 366
BstDEI	CTNAG	3 cut(s)	399, 414, 689
BstKTI	GATC	3 cut(s)	484, 493, 682
BstMBI	GATC	3 cut(s)	481, 490, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 598
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	4 cut(s)	181, 486, 580, 581
BstV1I	GCAGC	4 cut(s)	190, 467, 601, 634
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	309, 359
Cac8I	GCNNGC	3 cut(s)	13, 201, 366
Cfr9I	CCCGGG	1 cut(s)	581
CviAII	CATG	3 cut(s)	30, 313, 516
DdeI	CTNAG	3 cut(s)	399, 414, 689
DpnI	GATC	3 cut(s)	483, 492, 681
DpnII	GATC	3 cut(s)	481, 490, 679
Eam1104I	CTCTTC	2 cut(s)	43, 95
EarI	CTCTTC	2 cut(s)	43, 95
Eco57I	CTGAAG	1 cut(s)	255
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	33, 316, 519
FaiI	YATR	5 cut(s)	31, 240, 314, 517, 575
FalI	AAGNNNNNCTT	3 cut(s)	77, 109, 698
FaqI	GGGAC	4 cut(s)	145, 271, 339, 449
FatI	CATG	3 cut(s)	29, 312, 515
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	204, 456, 615, 648
Fsp4HI	GCNGC	4 cut(s)	204, 456, 615, 648
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	4 cut(s)	204, 456, 615, 648
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	424
HapII	CCGG	2 cut(s)	488, 582
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	33, 316, 519
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	143, 437, 522
HpaII	CCGG	2 cut(s)	488, 582
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	148, 684, 692
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	26, 33, 90, 340, 700
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	2 cut(s)	158, 554
HpyCH4V	TGCA	2 cut(s)	218, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 598
HpyF3I	CTNAG	3 cut(s)	399, 414, 689
HpySE526I	ACGT	2 cut(s)	158, 554
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	33, 316, 519
Kzo9I	GATC	3 cut(s)	481, 490, 679
LguI	GCTCTTC	1 cut(s)	95
Lsp1109I	GCAGC	4 cut(s)	190, 467, 601, 634
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	158, 554
MalI	GATC	3 cut(s)	483, 492, 681
MboI	GATC	3 cut(s)	481, 490, 679
MboII	GAAGA	8 cut(s)	18, 30, 82, 259, 261, 262, 504, 617
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	5 cut(s)	130, 194, 296, 445, 638
MlyI	GAGTC	2 cut(s)	431, 531
MnlI	CCTC	6 cut(s)	70, 73, 76, 343, 409, 480
MseI	TTAA	2 cut(s)	210, 721
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	2 cut(s)	488, 582
MspR9I	CCNGG	4 cut(s)	183, 488, 582, 583
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	365, 598
NciI	CCSGG	3 cut(s)	488, 582, 583
NdeII	GATC	3 cut(s)	481, 490, 679
NlaIII	CATG	3 cut(s)	33, 316, 519
NlaIV	GGNNCC	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	205, 457, 616, 649
PleI	GAGTC	2 cut(s)	431, 530
PpsI	GAGTC	2 cut(s)	431, 530
Psp1406I	AACGTT	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	210, 721
SatI	GCNGC	4 cut(s)	204, 456, 615, 648
Sau3AI	GATC	3 cut(s)	481, 490, 679
SchI	GAGTC	2 cut(s)	431, 531
ScrFI	CCNGG	4 cut(s)	183, 488, 582, 583
SduI	GDGCHC	1 cut(s)	361
SmaI	CCCGGG	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	5 cut(s)	130, 194, 296, 445, 638
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	181, 486, 580, 581
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	2 cut(s)	161, 557
TasI	AATT	5 cut(s)	130, 194, 296, 445, 638
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	210, 721
Tru9I	TTAA	2 cut(s)	210, 721
TscAI	CASTG	2 cut(s)	309, 366
TseI	GCWGC	4 cut(s)	203, 455, 614, 647
TspDTI	ATGAA	2 cut(s)	18, 504
TspMI	CCCGGG	1 cut(s)	581
TspRI	CASTG	2 cut(s)	309, 366
Van91I	CCANNNNNTGG	1 cut(s)	182
XmaI	CCCGGG	1 cut(s)	581
XspI	CTAG	1 cut(s)	231
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.