Prupe.2G029800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000939
Physical Location & Seq
Reverse (-)
3180374 .. 3186816
6443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G029800.1

Sequence Viewer

Length: 1413 bp
ATGGCTTCTCTTCAACCTTCATGGCTCTCTTCCCTCAACTCCATCTCTTCCACAACAAAACCCACTCTTTTCCCCTCCACAAACCTTAACAAGCCCCACCCTTTAAAACCATTCAAACTCTCCTTCTCTCTCAACCCACCCAATTCTGAATCTTCACAACCCAACTCACCAAATTCACCCGAAACAACGCCGGAAGCCCAGCCTGGGCCAACGGACCCTGTCAAGCTCGCACTGGAGAATGCCAAGGCGTATAAGAAGTCAGTGCAAATGAACAAGAAATTGAAAATTGAGAAAAACCCAGTCAAGGATGGTGATGGGATTGCTGGAAATGGTGAGTCGGGCCCGGATGGAGCTGGCGGTGGGAAGAAGGAAGTGCCTGCTGCGGTTAAGATTGCAATGGAGAAAGCTAAAGAGTATAAGAAGAGTAAAGGCATTGTGGGTGGTGACATTAATGCTGGGGAGAGTGACAAAATTTCAGGTTTGGAGGAAAGTAATGGGGGAAACTTGGGGAATGAGATAGTAGACAAGAAGGGAAAATTGTCAGTTTCAAGTATTGATTTTGTGGGACTTGGCTTTGCGGATAAGAAGGAGGGTAGAGGACTGCCAGCTGGGTTGGTTCCAATAGCAGACTATTTCCCAGAAGGGAACTCACCTGACGTTGAGATTATAGTCGGGGATGCTAGAAATTTTGATGCAGTGGCACGGAAGCCAGAGCAGACTCAAGGAGACAACTCAGATCTTTACAAGCCAAAAGTTTCTTCATGGGGTGTATTTCCTAGACCGAATGACATTTCAAAAACGTTTGGTGGTGGAAGAGTTATACAACCTGGGGAAGTGCTGGAAACAGCTGAAGAAAAAGCTGCTAAAGAAGCACGCACAAGACAATTAGTTGCTGCTTACAAGAGTAAAATGGGCATGAACATTGATCCAAAGCTAAGATCTGAATGTGAGAAGGCACTAAAGGATGGTGACACATTGATGGATGTTGGAGAGCTTAAGGAAGCATTAATCTACTATGAGCAGGTTATGGATAAGTTACCATTTAAGAGTGAGCTTCATGGGTTGGCTGCTTTACAATGGTCTATTTGTCAAGACTCCCTCAGTAGGTCGCAGGAAGCTCAAGTCATGTACGAGAAGCTTCAATCCCACCCAACTGCTAAAGTAAGCAAGAAGGCGAGGCAATTTGTGTTCAGCTTTCAGGCCATGGAAATGATGAAGCTTACAGGGAGCTCACCTTGGAAGAACACTGGCTTTCAGAATTATTTTGAAGCTTTCATTGAAAATAAATCCGACTATGTGCTAAAAGAGGCTGAAAGTGAAGTAGGTACACTGAGTCAAACTCTTCCATATATTATTTTTCTTGTTTCTCCCATTTTCGTAGTGCTACTTATTGCTTTACAAAAGAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

51.09

Weight (kDa)

8.15

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1012
AccI GTMKAC 1 cut(s) 522
AciI CCGC 3 cut(s) 357, 383, 578
AclI AACGTT 1 cut(s) 800
AclWI GGATC 1 cut(s) 920
AcsI RAATTY 3 cut(s) 172, 471, 685
AcuI CTGAAG 1 cut(s) 870
AfaI GTAC 2 cut(s) 1130, 1327
AfiI CCNNNNNNNGG 3 cut(s) 204, 304, 1104
AflII CTTAAG 1 cut(s) 995
AgsI TTSAA 8 cut(s) 14, 115, 283, 549, 795, 1142, 1268, 1280
AjnI CCWGG 2 cut(s) 202, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
Alw21I GWGCWC 1 cut(s) 1232
Alw26I GTCTC 1 cut(s) 720
AlwI GGATC 1 cut(s) 920
AoxI GGCC 3 cut(s) 206, 340, 1200
ApaI GGGCCC 1 cut(s) 344
ApeKI GCWGC 4 cut(s) 380, 860, 893, 1067
ApoI RAATTY 3 cut(s) 172, 471, 685
AseI ATTAAT 2 cut(s) 450, 1007
AspS9I GGNCC 4 cut(s) 206, 214, 340, 341
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 8 cut(s) 159, 168, 323, 344, 455, 642, 980, 1224
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 344
BanII GRGCYC 2 cut(s) 344, 1232
Bbv12I GWGCWC 1 cut(s) 1232
BbvI GCAGC 4 cut(s) 367, 847, 880, 1054
BccI CCATC 6 cut(s) 50, 302, 308, 341, 959, 973
BciT130I CCWGG 2 cut(s) 204, 828
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 720
BfaI CTAG 2 cut(s) 681, 777
BfrI CTTAAG 1 cut(s) 995
BfuAI ACCTGC 1 cut(s) 1012
BglII AGATCT 2 cut(s) 736, 938
BisI GCNGC 4 cut(s) 381, 861, 894, 1068
BlsI GCNGC 4 cut(s) 382, 862, 895, 1069
Bme1390I CCNGG 3 cut(s) 204, 344, 828
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 206, 214, 340, 341
BmiI GGNNCC 3 cut(s) 216, 342, 618
BmrFI CCNGG 3 cut(s) 204, 344, 828
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 667, 682
BmuI ACTGGG 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 1324, 1356
BpmI CTGGAG 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 705, 1104
BpuMI CCSGG 1 cut(s) 344
BsaJI CCNNGG 5 cut(s) 203, 243, 827, 1203, 1235
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 304, 1104
Bse1I ACTGG 3 cut(s) 237, 299, 1252
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 204, 828
BseDI CCNNGG 5 cut(s) 203, 243, 827, 1203, 1235
BseGI GGATG 5 cut(s) 313, 352, 682, 970, 988
BseLI CCNNNNNNNGG 3 cut(s) 204, 304, 1104
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 747, 1114, 1322
BseNI ACTGG 3 cut(s) 237, 299, 1252
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 4 cut(s) 367, 847, 880, 1054
BseYI CCCAGC 3 cut(s) 198, 455, 608
BshFI GGCC 3 cut(s) 208, 342, 1202
BsiHKAI GWGCWC 1 cut(s) 1232
BsiSI CCGG 2 cut(s) 191, 344
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 3 cut(s) 204, 304, 1104
BsmAI GTCTC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 3 cut(s) 208, 342, 1202
Bsp120I GGGCCC 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 344, 1232
Bsp143I GATC 3 cut(s) 736, 925, 938
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 3 cut(s) 357, 383, 578
BspANI GGCC 3 cut(s) 208, 342, 1202
BspCNI CTCAG 3 cut(s) 746, 1113, 1323
BspLI GGNNCC 3 cut(s) 216, 342, 618
BspMI ACCTGC 1 cut(s) 1012
BspPI GGATC 1 cut(s) 920
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 3 cut(s) 237, 299, 1252
BssECI CCNNGG 5 cut(s) 203, 243, 827, 1203, 1235
BssMI GATC 3 cut(s) 736, 925, 938
BssT1I CCWWGG 3 cut(s) 243, 1203, 1235
Bst2UI CCWGG 2 cut(s) 204, 828
Bst6I CTCTTC 6 cut(s) 15, 34, 52, 416, 808, 1347
BstAFI CTTAAG 1 cut(s) 995
BstC8I GCNNGC 5 cut(s) 228, 355, 378, 606, 874
BstDEI CTNAG 4 cut(s) 733, 935, 1100, 1331
BstDSI CCRYGG 1 cut(s) 1203
BstF5I GGATG 5 cut(s) 313, 352, 682, 970, 988
BstKTI GATC 3 cut(s) 739, 928, 941
BstMAI GTCTC 1 cut(s) 720
BstMBI GATC 3 cut(s) 736, 925, 938
BstMWI GCNNNNNNNGC 1 cut(s) 869
BstNI CCWGG 2 cut(s) 204, 828
BstSCI CCNGG 3 cut(s) 202, 342, 826
BstSLI GKGCMC 1 cut(s) 344
BstV1I GCAGC 4 cut(s) 367, 847, 880, 1054
BstX2I RGATCY 2 cut(s) 736, 938
BstYI RGATCY 2 cut(s) 736, 938
BsuRI GGCC 3 cut(s) 208, 342, 1202
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 5 cut(s) 313, 352, 682, 970, 988
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 5 cut(s) 230, 267, 702, 1245, 1328
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 5 cut(s) 228, 355, 378, 606, 874
Cfr13I GGNCC 4 cut(s) 206, 214, 340, 341
Csp6I GTAC 2 cut(s) 1129, 1326
CviAII CATG 6 cut(s) 21, 762, 916, 1058, 1126, 1204
CviQI GTAC 2 cut(s) 1129, 1326
DdeI CTNAG 4 cut(s) 733, 935, 1100, 1331
DpnI GATC 3 cut(s) 738, 927, 940
DpnII GATC 3 cut(s) 736, 925, 938
DraI TTTAAA 1 cut(s) 105
Eam1104I CTCTTC 6 cut(s) 15, 34, 52, 416, 808, 1347
EarI CTCTTC 6 cut(s) 15, 34, 52, 416, 808, 1347
Ecl136II GAGCTC 1 cut(s) 1230
Eco130I CCWWGG 3 cut(s) 243, 1203, 1235
Eco24I GRGCYC 2 cut(s) 344, 1232
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 1230
Eco57I CTGAAG 1 cut(s) 870
EcoICRI GAGCTC 1 cut(s) 1230
EcoRII CCWGG 2 cut(s) 202, 826
EcoT14I CCWWGG 3 cut(s) 243, 1203, 1235
EcoT38I GRGCYC 2 cut(s) 344, 1232
ErhI CCWWGG 3 cut(s) 243, 1203, 1235
FaeI CATG 6 cut(s) 24, 765, 919, 1061, 1129, 1207
FaqI GGGAC 1 cut(s) 579
FatI CATG 6 cut(s) 20, 761, 915, 1057, 1125, 1203
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 381, 861, 894, 1068
FokI GGATG 5 cut(s) 320, 359, 689, 977, 995
FriOI GRGCYC 2 cut(s) 344, 1232
Fsp4HI GCNGC 4 cut(s) 381, 861, 894, 1068
FspBI CTAG 2 cut(s) 681, 777
GluI GCNGC 4 cut(s) 381, 861, 894, 1068
GsaI CCCAGC 3 cut(s) 202, 459, 612
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 3 cut(s) 208, 342, 1202
HapII CCGG 2 cut(s) 191, 344
Hin1II CATG 6 cut(s) 24, 765, 919, 1061, 1129, 1207
HindIII AAGCTT 3 cut(s) 1136, 1217, 1269
HinfI GANTC 5 cut(s) 149, 335, 718, 1094, 1333
HpaII CCGG 2 cut(s) 191, 344
HphI GGTGA 8 cut(s) 159, 168, 323, 344, 455, 642, 980, 1224
Hpy166II GTNNAC 2 cut(s) 523, 1328
Hpy188I TCNGA 5 cut(s) 148, 736, 943, 1257, 1291
Hpy188III TCNNGA 1 cut(s) 1091
Hpy8I GTNNAC 2 cut(s) 523, 1328
HpyAV CCTTC 8 cut(s) 27, 133, 361, 523, 580, 635, 946, 1165
HpyCH4IV ACGT 2 cut(s) 657, 800
HpyCH4V TGCA 3 cut(s) 265, 395, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 869
HpyF3I CTNAG 4 cut(s) 733, 935, 1100, 1331
HpySE526I ACGT 2 cut(s) 657, 800
Hsp92II CATG 6 cut(s) 24, 765, 919, 1061, 1129, 1207
Kzo9I GATC 3 cut(s) 736, 925, 938
LmnI GCTCC 2 cut(s) 350, 1227
Lsp1109I GCAGC 4 cut(s) 367, 847, 880, 1054
LweI GCATC 2 cut(s) 667, 682
MaeI CTAG 2 cut(s) 681, 777
MaeII ACGT 2 cut(s) 657, 800
MaeIII GTNAC 4 cut(s) 443, 464, 968, 1035
MalI GATC 3 cut(s) 738, 927, 940
MboI GATC 3 cut(s) 736, 925, 938
MflI RGATCY 2 cut(s) 736, 938
MhlI GDGCHC 2 cut(s) 344, 1232
MlyI GAGTC 4 cut(s) 344, 712, 1088, 1342
MmeI TCCRAC 2 cut(s) 967, 1314
MnlI CCTC 8 cut(s) 44, 85, 478, 583, 590, 1109, 1170, 1300
MseI TTAA 7 cut(s) 87, 104, 387, 450, 996, 1007, 1044
MslI CAYNNNNRTG 2 cut(s) 977, 1208
MspA1I CMGCKG 2 cut(s) 608, 848
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 2 cut(s) 191, 344
MspR9I CCNGG 3 cut(s) 204, 344, 828
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 2 cut(s) 204, 828
MwoI GCNNNNNNNGC 1 cut(s) 869
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 1203
NdeII GATC 3 cut(s) 736, 925, 938
NlaIII CATG 6 cut(s) 24, 765, 919, 1061, 1129, 1207
NlaIV GGNNCC 3 cut(s) 216, 342, 618
NmuCI GTSAC 3 cut(s) 443, 464, 968
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 382, 862, 895, 1069
PleI GAGTC 4 cut(s) 343, 712, 1088, 1341
PpsI GAGTC 4 cut(s) 343, 712, 1088, 1341
PshBI ATTAAT 2 cut(s) 450, 1007
Psp124BI GAGCTC 1 cut(s) 1232
Psp1406I AACGTT 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 202, 826
PspFI CCCAGC 3 cut(s) 198, 455, 608
PspGI CCWGG 2 cut(s) 202, 826
PspN4I GGNNCC 3 cut(s) 216, 342, 618
PspOMI GGGCCC 1 cut(s) 340
PspPI GGNCC 4 cut(s) 206, 214, 340, 341
PsuI RGATCY 2 cut(s) 736, 938
PsyI GACNNNGTC 1 cut(s) 218
PvuII CAGCTG 2 cut(s) 608, 848
RsaI GTAC 2 cut(s) 1130, 1327
RsaNI GTAC 2 cut(s) 1129, 1326
RseI CAYNNNNRTG 2 cut(s) 977, 1208
SacI GAGCTC 1 cut(s) 1232
SaqAI TTAA 7 cut(s) 87, 104, 387, 450, 996, 1007, 1044
SatI GCNGC 4 cut(s) 381, 861, 894, 1068
Sau3AI GATC 3 cut(s) 736, 925, 938
Sau96I GGNCC 4 cut(s) 206, 214, 340, 341
SchI GAGTC 4 cut(s) 344, 712, 1088, 1342
ScrFI CCNGG 3 cut(s) 204, 344, 828
SduI GDGCHC 2 cut(s) 344, 1232
SfaNI GCATC 2 cut(s) 667, 682
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 977, 1208
SmlI CTYRAG 3 cut(s) 720, 995, 1119
SmoI CTYRAG 3 cut(s) 720, 995, 1119
SsiI CCGC 3 cut(s) 357, 383, 578
SspMI CTAG 2 cut(s) 681, 777
SstI GAGCTC 1 cut(s) 1232
StyD4I CCNGG 3 cut(s) 202, 342, 826
StyI CCWWGG 3 cut(s) 243, 1203, 1235
TaiI ACGT 2 cut(s) 660, 803
TaqII GACCGA 1 cut(s) 796
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 7 cut(s) 87, 104, 387, 450, 996, 1007, 1044
Tru9I TTAA 7 cut(s) 87, 104, 387, 450, 996, 1007, 1044
TscAI CASTG 5 cut(s) 237, 267, 702, 1252, 1335
TseFI GTSAC 3 cut(s) 443, 464, 968
TseI GCWGC 4 cut(s) 380, 860, 893, 1067
Tsp45I GTSAC 3 cut(s) 443, 464, 968
TspDTI ATGAA 7 cut(s) 9, 284, 750, 932, 1046, 1229, 1264
TspGWI ACGGA 2 cut(s) 227, 718
TspRI CASTG 5 cut(s) 237, 267, 702, 1252, 1335
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 2 cut(s) 450, 1007
XapI RAATTY 3 cut(s) 172, 471, 685
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 2 cut(s) 681, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.