Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Forward (+)

64510411 .. 64521358

Gene Structure 10948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGCTTGAACATTTATCCTAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAACATCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTTTGGATAAGTTACCATTCAAGATTATGACTCCGAAAGCTCGTGCAAACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTATGTTTGGGTATGTAGAAGGTGGTAGCAGGACAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTCGACTCTCTGATACAGCAATGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAGAACCATCAACGAAAGTGTTCTTCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAAGTAGTGAAATTTTTTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

168

Amino Acids

19.02

Weight (kDa)

9.77

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	31 - 164	1.7e-43	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	333, 393
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	6 cut(s)	10, 136, 215, 228, 406, 443
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	25, 85, 155, 338
AluI	AGCT	4 cut(s)	25, 85, 155, 338
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	71, 315
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	4 cut(s)	50, 303, 328, 428
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	229
BfrI	CTTAAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	317, 333
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	195, 460
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	61, 475
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	40, 341
BseXI	GCAGC	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	39, 340
BspLI	GGNNCC	2 cut(s)	317, 333
BspT107I	GGYRCC	1 cut(s)	331
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	366
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	21, 26, 327
BstF5I	GGATG	2 cut(s)	61, 475
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	61, 475
Csp6I	GTAC	2 cut(s)	332, 392
CviJI	RGCY	7 cut(s)	6, 25, 85, 155, 316, 338, 410
CviKI_1	RGCY	7 cut(s)	6, 25, 85, 155, 316, 338, 410
CviQI	GTAC	2 cut(s)	332, 392
DdeI	CTNAG	3 cut(s)	21, 26, 327
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	292
FaiI	YATR	5 cut(s)	108, 143, 167, 242, 252
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	2 cut(s)	68, 482
Fsp4HI	GCNGC	1 cut(s)	411
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	276
HinfI	GANTC	5 cut(s)	62, 145, 200, 224, 345
HphI	GGTGA	2 cut(s)	71, 315
Hpy188I	TCNGA	5 cut(s)	29, 80, 150, 300, 352
Hpy188III	TCNNGA	2 cut(s)	136, 440
HpyAV	CCTTC	3 cut(s)	82, 251, 269
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	161, 473
HpyF3I	CTNAG	3 cut(s)	21, 26, 327
KpnI	GGTACC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	321
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	195, 460
MaeIII	GTNAC	3 cut(s)	59, 126, 369
MboII	GAAGA	3 cut(s)	55, 170, 428
MluCI	AATT	1 cut(s)	491
MlyI	GAGTC	4 cut(s)	56, 139, 194, 339
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	50, 189, 375
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
NlaIV	GGNNCC	2 cut(s)	317, 333
NmuCI	GTSAC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	4 cut(s)	56, 139, 194, 339
PpsI	GAGTC	4 cut(s)	56, 139, 194, 339
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	317, 333
RsaI	GTAC	2 cut(s)	333, 393
RsaNI	GTAC	2 cut(s)	332, 392
SaqAI	TTAA	3 cut(s)	50, 189, 375
SatI	GCNGC	1 cut(s)	411
SchI	GAGTC	4 cut(s)	56, 139, 194, 339
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	9 cut(s)	27, 87, 157, 262, 298, 328, 333, 340, 390
SfaNI	GCATC	2 cut(s)	195, 460
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	203, 343
TasI	AATT	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	50, 189, 375
Tru9I	TTAA	3 cut(s)	50, 189, 375
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	86, 377
Vha464I	CTTAAG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.