RLG00000033777

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000939
Physical Location & Seq
Forward (+)
32015748 .. 32018763
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033777

Sequence Viewer

Length: 927 bp
ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAAACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCAGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGGGAAGACATTAAAGGATGGTGACTCATTGATGAACATCGGAAAGCTGATGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGATTATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGTAGGGCAGAAGGACGAAACATAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTCTGATACAGCAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTATATCAAGTATTCAAGGCTGCCAGAACCATCAACGAAAGTGTTCTTCTTGAAATGCCTGTGCCAACCATTATTAGGGATGCACTTCCCAAGGTAGTGAAATTTTTTCTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

33.88

Weight (kDa)

9.29

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 168 - 304 2.1e-47 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 751
AccB7I CCANNNNNTGG 1 cut(s) 761
AclI AACGTT 1 cut(s) 344
AclWI GGATC 2 cut(s) 288, 431
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 753
AfiI CCNNNNNNNGG 2 cut(s) 761, 885
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 8 cut(s) 62, 339, 430, 556, 635, 648, 826, 863
AjnI CCWGG 2 cut(s) 276, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 6 cut(s) 11, 158, 445, 505, 575, 758
AluI AGCT 6 cut(s) 11, 158, 445, 505, 575, 758
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 2 cut(s) 288, 431
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 371
ApeKI GCWGC 3 cut(s) 245, 404, 830
ApoI RAATTY 1 cut(s) 911
Asp700I GAANNNNTTC 1 cut(s) 852
Asp718I GGTACC 1 cut(s) 751
AsuC2I CCSGG 2 cut(s) 372, 373
AsuHPI GGTGA 2 cut(s) 491, 735
AvaI CYCGRG 1 cut(s) 371
AxyI CCTNAGG 2 cut(s) 204, 747
BanI GGYRCC 1 cut(s) 751
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 257, 391, 817
BccI CCATC 5 cut(s) 470, 502, 723, 748, 848
BciT130I CCWGG 2 cut(s) 278, 714
BciVI GTATCC 1 cut(s) 649
BcnI CCSGG 2 cut(s) 372, 373
BfaI CTAG 2 cut(s) 12, 42
BfrI CTTAAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 3 cut(s) 246, 405, 831
BlsI GCNGC 3 cut(s) 247, 406, 832
Bme1390I CCNGG 4 cut(s) 278, 372, 373, 714
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 3 cut(s) 168, 737, 753
BmrFI CCNGG 4 cut(s) 278, 372, 373, 714
BmsI GCATC 2 cut(s) 615, 880
BpiI GAAGAC 1 cut(s) 470
BpmI CTGGAG 2 cut(s) 214, 696
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 372, 373
BsaBI GATNNNNATC 1 cut(s) 494
BsaJI CCNNGG 5 cut(s) 276, 370, 371, 372, 900
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 885
Bse1I ACTGG 2 cut(s) 231, 766
Bse21I CCTNAGG 2 cut(s) 204, 747
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 2 cut(s) 278, 714
BseDI CCNNGG 5 cut(s) 276, 370, 371, 372, 900
BseGI GGATG 2 cut(s) 481, 895
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 761, 885
BseMII CTCAG 5 cut(s) 195, 203, 460, 651, 761
BseNI ACTGG 2 cut(s) 231, 766
BseXI GCAGC 3 cut(s) 257, 391, 817
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 2 cut(s) 264, 600
BshNI GGYRCC 1 cut(s) 751
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 3 cut(s) 52, 129, 239
BslI CCNNNNNNNGG 2 cut(s) 761, 885
BsmFI GGGAC 3 cut(s) 52, 129, 239
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 280, 436
BspCNI CTCAG 5 cut(s) 196, 202, 459, 652, 760
BspLI GGNNCC 3 cut(s) 168, 737, 753
BspPI GGATC 2 cut(s) 288, 431
BspT107I GGYRCC 1 cut(s) 751
BspTI CTTAAG 1 cut(s) 608
BsrI ACTGG 2 cut(s) 231, 766
BssECI CCNNGG 5 cut(s) 276, 370, 371, 372, 900
BssMI GATC 2 cut(s) 280, 436
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 900
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 278, 714
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 5 cut(s) 189, 204, 446, 660, 747
BstF5I GGATG 2 cut(s) 481, 895
BstKTI GATC 2 cut(s) 283, 439
BstMBI GATC 2 cut(s) 280, 436
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 278, 714
BstSCI CCNGG 4 cut(s) 276, 370, 371, 712
BstV1I GCAGC 3 cut(s) 257, 391, 817
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 2 cut(s) 204, 747
BsuI GTATCC 1 cut(s) 649
BtsCI GGATG 2 cut(s) 481, 895
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 3 cut(s) 99, 149, 247
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 761
Cfr9I CCCGGG 1 cut(s) 371
Csp6I GTAC 1 cut(s) 752
CviAII CATG 2 cut(s) 103, 306
CviQI GTAC 1 cut(s) 752
DdeI CTNAG 5 cut(s) 189, 204, 446, 660, 747
DpnI GATC 2 cut(s) 282, 438
DpnII GATC 2 cut(s) 280, 436
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 900
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 2 cut(s) 204, 747
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 276, 712
EcoT14I CCWWGG 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 2 cut(s) 106, 309
FaqI GGGAC 3 cut(s) 52, 129, 239
FatI CATG 2 cut(s) 102, 305
Fnu4HI GCNGC 3 cut(s) 246, 405, 831
FokI GGATG 2 cut(s) 488, 902
Fsp4HI GCNGC 3 cut(s) 246, 405, 831
FspBI CTAG 2 cut(s) 12, 42
GluI GCNGC 3 cut(s) 246, 405, 831
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 2 cut(s) 214, 696
HapII CCGG 1 cut(s) 372
Hin1II CATG 2 cut(s) 106, 309
HinfI GANTC 7 cut(s) 227, 312, 482, 565, 620, 644, 765
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 491, 735
Hpy188I TCNGA 5 cut(s) 449, 500, 570, 720, 772
Hpy188III TCNNGA 2 cut(s) 556, 860
HpyAV CCTTC 3 cut(s) 130, 671, 689
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 3 cut(s) 245, 581, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 5 cut(s) 189, 204, 446, 660, 747
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 2 cut(s) 106, 309
KpnI GGTACC 1 cut(s) 755
Kzo9I GATC 2 cut(s) 280, 436
LmnI GCTCC 1 cut(s) 741
Lsp1109I GCAGC 3 cut(s) 257, 391, 817
LweI GCATC 2 cut(s) 615, 880
MaeI CTAG 2 cut(s) 12, 42
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 479, 546, 789
MalI GATC 2 cut(s) 282, 438
MboI GATC 2 cut(s) 280, 436
MboII GAAGA 6 cut(s) 40, 294, 389, 475, 590, 848
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 4 cut(s) 86, 235, 395, 911
MlyI GAGTC 6 cut(s) 221, 321, 476, 559, 614, 759
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 5 cut(s) 133, 199, 270, 373, 756
MroXI GAANNNNTTC 1 cut(s) 852
MseI TTAA 3 cut(s) 470, 609, 795
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 4 cut(s) 278, 372, 373, 714
MvaI CCWGG 2 cut(s) 278, 714
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 2 cut(s) 372, 373
NdeII GATC 2 cut(s) 280, 436
NlaIII CATG 2 cut(s) 106, 309
NlaIV GGNNCC 3 cut(s) 168, 737, 753
NmuCI GTSAC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 1 cut(s) 644
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 3 cut(s) 247, 406, 832
PleI GAGTC 6 cut(s) 221, 320, 476, 559, 614, 759
PpsI GAGTC 6 cut(s) 221, 320, 476, 559, 614, 759
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 276, 712
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 276, 712
PspN4I GGNNCC 3 cut(s) 168, 737, 753
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 753
RsaNI GTAC 1 cut(s) 752
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 3 cut(s) 470, 609, 795
SatI GCNGC 3 cut(s) 246, 405, 831
Sau3AI GATC 2 cut(s) 280, 436
SchI GAGTC 6 cut(s) 221, 321, 476, 559, 614, 759
ScrFI CCNGG 4 cut(s) 278, 372, 373, 714
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 2 cut(s) 615, 880
SmaI CCCGGG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 261, 608
SmoI CTYRAG 2 cut(s) 261, 608
Sse9I AATT 4 cut(s) 86, 235, 395, 911
SspMI CTAG 2 cut(s) 12, 42
StyD4I CCNGG 4 cut(s) 276, 370, 371, 712
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 98, 623
TasI AATT 4 cut(s) 86, 235, 395, 911
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 3 cut(s) 470, 609, 795
Tru9I TTAA 3 cut(s) 470, 609, 795
TscAI CASTG 3 cut(s) 99, 156, 247
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 3 cut(s) 245, 404, 830
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 294, 506
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 3 cut(s) 99, 156, 247
Van91I CCANNNNNTGG 1 cut(s) 761
Vha464I CTTAAG 1 cut(s) 608
XapI RAATTY 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmaI CCCGGG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 2 cut(s) 12, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.