Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Forward (+)

36049132 .. 36054471

Gene Structure 5340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAGTAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGGAGGGTAGTCGGGTAGAGCACTGCCAGCTGGTTTGGTGGTGGGCGAGTTATACGCCCCGCCCCGGGGAAGTGCTTGCAACGCAGGAAGAAAAAGCTGCTAAGGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTGGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAGAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCTTTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGGTAATGCTTCTTGCACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.67

Weight (kDa)

8.97

Isoelectric Point (pI)

22.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	290
AcuI	CTGAAG	2 cut(s)	36, 386
AfiI	CCNNNNNNNGG	3 cut(s)	197, 198, 199
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	62, 415
AhlI	ACTAGT	1 cut(s)	41
AluBI	AGCT	6 cut(s)	11, 163, 230, 304, 364, 374
AluI	AGCT	6 cut(s)	11, 163, 230, 304, 364, 374
Alw21I	GWGCWC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	230, 263
AsuC2I	CCSGG	2 cut(s)	198, 199
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	217, 250
BccI	CCATC	1 cut(s)	329
BcnI	CCSGG	2 cut(s)	198, 199
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	2 cut(s)	12, 42
BisI	GCNGC	2 cut(s)	231, 264
BlsI	GCNGC	2 cut(s)	232, 265
Bme1390I	CCNGG	2 cut(s)	198, 199
BmeT110I	CYCGRG	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	198, 199
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	198, 199
BsaJI	CCNNGG	3 cut(s)	196, 197, 198
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 198, 199
BseDI	CCNNGG	3 cut(s)	196, 197, 198
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	197, 198, 199
BseMII	CTCAG	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	217, 250
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	52, 129
BslI	CCNNNNNNNGG	3 cut(s)	197, 198, 199
BsmFI	GGGAC	2 cut(s)	52, 129
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	318
BspPI	GGATC	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	196, 197, 198
BssMI	GATC	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	161, 210
BstDEI	CTNAG	2 cut(s)	234, 305
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 214
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	196, 197
BstV1I	GCAGC	2 cut(s)	217, 250
BstV2I	GAAGAC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	99, 154
Cac8I	GCNNGC	2 cut(s)	161, 210
Cfr9I	CCCGGG	1 cut(s)	197
CviAII	CATG	2 cut(s)	103, 434
CviJI	RGCY	7 cut(s)	11, 163, 230, 285, 304, 364, 374
CviKI_1	RGCY	7 cut(s)	11, 163, 230, 285, 304, 364, 374
DdeI	CTNAG	2 cut(s)	234, 305
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	36, 386
Eco88I	CYCGRG	1 cut(s)	197
FaeI	CATG	2 cut(s)	106, 437
FaiI	YATR	6 cut(s)	21, 104, 186, 387, 398, 435
FaqI	GGGAC	2 cut(s)	52, 129
FatI	CATG	2 cut(s)	102, 433
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	231, 264
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	231, 264
FspBI	CTAG	2 cut(s)	12, 42
GluI	GCNGC	2 cut(s)	231, 264
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	2 cut(s)	106, 437
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	308, 359
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	212, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 214
HpyF3I	CTNAG	2 cut(s)	234, 305
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	106, 437
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	39, 149, 173, 203, 211, 271
Lsp1109I	GCAGC	2 cut(s)	217, 250
MaeI	CTAG	2 cut(s)	12, 42
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	338, 405
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	4 cut(s)	40, 43, 233, 334
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	86, 254
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	130, 232, 325
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	198, 199
MwoI	GCNNNNNNNGC	2 cut(s)	160, 214
NciI	CCSGG	2 cut(s)	198, 199
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	106, 437
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	437
PciI	ACATGT	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	232, 265
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PscI	ACATGT	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	2 cut(s)	231, 264
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	198, 199
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	9 cut(s)	13, 58, 165, 232, 306, 357, 366, 376, 420
SmaI	CCCGGG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	2 cut(s)	86, 254
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	12, 42
StyD4I	CCNGG	2 cut(s)	196, 197
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	86, 254
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	2 cut(s)	99, 161
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	230, 263
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	365
TspMI	CCCGGG	1 cut(s)	197
TspRI	CASTG	2 cut(s)	99, 161
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmaI	CCCGGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	12, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.