Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Forward (+)

71977415 .. 71977999

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGTAGGGCAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

46

Amino Acids

5.02

Weight (kDa)

4.75

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	1 - 44	3.3e-17	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	74, 87
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
BauI	CACGAG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	91
BspTI	CTTAAG	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	88
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	99
FaiI	YATR	2 cut(s)	26, 111
HinfI	GANTC	3 cut(s)	4, 59, 83
Hpy188I	TCNGA	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	110, 128
HpyCH4V	TGCA	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	99
LpnPI	CCDG	1 cut(s)	54
LweI	GCATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	48
SchI	GAGTC	1 cut(s)	53
SetI	ASST	2 cut(s)	16, 121
SfaNI	GCATC	1 cut(s)	54
SgeI	CNNG	5 cut(s)	27, 29, 53, 73, 92
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
TaqI	TCGA	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.