RchiOBHm_Chr4g0400621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000939
Physical Location & Seq
Forward (+)
18337291 .. 18337732
442 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37261

Sequence Viewer

Length: 258 bp
ATGGATTTTGTGGGACTTGGGTTTGCTAATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCACAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAATGTTTGGTGGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

8.96

Weight (kDa)

4.62

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 237
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 49
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 176
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 93, 101
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 49
BslFI GGGAC 2 cut(s) 27, 137
BsmFI GGGAC 2 cut(s) 27, 137
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 94, 100
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 87, 102
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 1 cut(s) 204
CviJI RGCY 4 cut(s) 56, 146, 157, 190
CviKI_1 RGCY 4 cut(s) 56, 146, 157, 190
DdeI CTNAG 2 cut(s) 87, 102
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco81I CCTNAGG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 207
FaiI YATR 1 cut(s) 205
FaqI GGGAC 2 cut(s) 27, 137
FatI CATG 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 112
Hin1II CATG 1 cut(s) 207
HinfI GANTC 2 cut(s) 125, 210
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 87, 102
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 42, 66, 74, 114, 142, 161, 188, 232
Lsp1109I GCAGC 1 cut(s) 155
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 192
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 133
MlyI GAGTC 2 cut(s) 119, 219
MnlI CCTC 3 cut(s) 31, 97, 168
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 119, 218
PpsI GAGTC 2 cut(s) 119, 218
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 56
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 2 cut(s) 119, 219
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 49
SetI ASST 3 cut(s) 58, 108, 198
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 174
TasI AATT 1 cut(s) 133
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.