Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002888.1

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Reverse (-)

139640 .. 140707

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002888.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgggccaggaacttgaagaacaagcagcgcctccgctcttcttttctctctacccacccaatcccaatgccgaatccgaaaccacgacgtccccagtcgacccaccaattcctgggaatgtcgaattgcctgctactgttaagactgcaatggagagagctagagagtataagcagaagaagacagggactagaaaaacttcaggtgttgaagcaaatgagaaaaacaagggaaaattgtcagtgtcgagcatggattttgtgggacttgagtttgctgataagaaggagggtagagcactgccagctgggttggttccaatcgcagacgattttgctcagggcaacttgcctgaggttgagattattgttagggactccagtaatttcagtgcagccacacccaagcctcaaggagatgaccccctggatctttacaagccaaaggggaagaagacacggagattggaagaaaattgcaaattgacttttccggcgacttttccggcaagcagccactcatggagggtcttttctccagcaaaggaggaccatggtggtgagaatctcccatcacttgaaattcaaatatctccctacaccttgtccttttatcaccttgccaatttgggaccatttgggggacaattgtgcaagagcatctcttgcacacttggggaccaaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.95

Weight (kDa)

5.74

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	113, 641
AgsI	TTSAA	4 cut(s)	17, 212, 581, 587
AjnI	CCWGG	3 cut(s)	6, 112, 426
AluBI	AGCT	2 cut(s)	161, 308
AluI	AGCT	2 cut(s)	161, 308
Alw21I	GWGCWC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	3 cut(s)	26, 395, 513
ApoI	RAATTY	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	4 cut(s)	4, 550, 632, 679
AsuHPI	GGTGA	2 cut(s)	572, 608
AvaII	GGWCC	3 cut(s)	550, 632, 679
AxyI	CCTNAGG	1 cut(s)	354
BbsI	GAAGAC	2 cut(s)	188, 461
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	38, 407, 525
BccI	CCATC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	3 cut(s)	8, 114, 428
BfaI	CTAG	2 cut(s)	162, 192
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	3 cut(s)	27, 396, 514
BlsI	GCNGC	3 cut(s)	28, 397, 515
Bme1390I	CCNGG	3 cut(s)	8, 114, 428
Bme18I	GGWCC	3 cut(s)	550, 632, 679
BmgT120I	GGNCC	4 cut(s)	4, 550, 632, 679
BmiI	GGNNCC	3 cut(s)	318, 633, 680
BmrFI	CCNGG	3 cut(s)	8, 114, 428
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	669
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	188, 461
BpmI	CTGGAG	2 cut(s)	364, 522
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	290, 396
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	113, 426, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 641
Bse1I	ACTGG	2 cut(s)	95, 381
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	8, 114, 428
BseDI	CCNNGG	3 cut(s)	113, 426, 553
BseLI	CCNNNNNNNGG	2 cut(s)	113, 641
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	345, 353
BseNI	ACTGG	2 cut(s)	95, 381
BseXI	GCAGC	3 cut(s)	38, 407, 525
BseYI	CCCAGC	1 cut(s)	308
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	494, 506
BslFI	GGGAC	6 cut(s)	76, 202, 279, 389, 645, 657
BslI	CCNNNNNNNGG	2 cut(s)	113, 641
BsmFI	GGGAC	6 cut(s)	76, 202, 279, 389, 645, 657
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	553
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	346, 352
BspLI	GGNNCC	3 cut(s)	318, 633, 680
BspPI	GGATC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	95, 381
BssECI	CCNNGG	3 cut(s)	113, 426, 553
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	553
Bst2UI	CCWGG	3 cut(s)	8, 114, 428
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	666
BstC8I	GCNNGC	3 cut(s)	132, 306, 511
BstDEI	CTNAG	2 cut(s)	339, 354
BstDSI	CCRYGG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 666
BstNI	CCWGG	3 cut(s)	8, 114, 428
BstSCI	CCNGG	3 cut(s)	6, 112, 426
BstV1I	GCAGC	3 cut(s)	38, 407, 525
BstV2I	GAAGAC	2 cut(s)	188, 461
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	249, 299, 397
Cac8I	GCNNGC	3 cut(s)	132, 306, 511
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	4 cut(s)	4, 550, 632, 679
CviAII	CATG	3 cut(s)	253, 522, 554
CviJI	RGCY	7 cut(s)	6, 161, 308, 398, 409, 442, 516
CviKI_1	RGCY	7 cut(s)	6, 161, 308, 398, 409, 442, 516
DdeI	CTNAG	2 cut(s)	339, 354
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	553
Eco47I	GGWCC	3 cut(s)	550, 632, 679
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	6, 112, 426
EcoT14I	CCWWGG	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	3 cut(s)	256, 525, 557
FaiI	YATR	4 cut(s)	171, 254, 523, 555
FaqI	GGGAC	6 cut(s)	76, 202, 279, 389, 645, 657
FatI	CATG	3 cut(s)	252, 521, 553
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	27, 396, 514
Fsp4HI	GCNGC	3 cut(s)	27, 396, 514
FspBI	CTAG	2 cut(s)	162, 192
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	27, 396, 514
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	2 cut(s)	364, 522
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	494, 506
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	256, 525, 557
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	74, 377, 565
HpaII	CCGG	2 cut(s)	494, 506
HphI	GGTGA	2 cut(s)	572, 608
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	5 cut(s)	149, 395, 480, 654, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 666
HpyF3I	CTNAG	2 cut(s)	339, 354
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	256, 525, 557
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	44
Lsp1109I	GCAGC	3 cut(s)	38, 407, 525
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	2 cut(s)	162, 192
MaeII	ACGT	1 cut(s)	89
MalI	GATC	1 cut(s)	432
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	430
MboII	GAAGA	7 cut(s)	29, 31, 190, 193, 463, 466, 482
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	9 cut(s)	108, 125, 236, 385, 475, 482, 582, 625, 647
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	42, 283, 349, 420, 519, 541
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	494, 506
MspR9I	CCNGG	3 cut(s)	8, 114, 428
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	3 cut(s)	8, 114, 428
MwoI	GCNNNNNNNGC	2 cut(s)	305, 666
NcoI	CCATGG	1 cut(s)	553
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	256, 525, 557
NlaIV	GGNNCC	3 cut(s)	318, 633, 680
PciSI	GCTCTTC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	74, 565
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	28, 397, 515
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	6, 112, 426
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	3 cut(s)	6, 112, 426
PspN4I	GGNNCC	3 cut(s)	318, 633, 680
PspPI	GGNCC	4 cut(s)	4, 550, 632, 679
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	558
SalI	GTCGAC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	27, 396, 514
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	4 cut(s)	4, 550, 632, 679
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	8, 114, 428
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	7 cut(s)	92, 163, 208, 310, 360, 605, 621
SfaNI	GCATC	1 cut(s)	669
SinI	GGWCC	3 cut(s)	550, 632, 679
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	269, 411
SmoI	CTYRAG	2 cut(s)	269, 411
Sse9I	AATT	9 cut(s)	108, 125, 236, 385, 475, 482, 582, 625, 647
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	162, 192
StyD4I	CCNGG	3 cut(s)	6, 112, 426
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	99, 123, 248
TasI	AATT	9 cut(s)	108, 125, 236, 385, 475, 482, 582, 625, 647
TfiI	GAWTC	2 cut(s)	74, 565
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	249, 306, 397
TseI	GCWGC	3 cut(s)	26, 395, 513
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	3 cut(s)	249, 306, 397
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	550, 632, 679
XapI	RAATTY	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	2 cut(s)	162, 192
ZraI	GACGTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.