Rw7G029130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000939
Physical Location & Seq
Forward (+)
40195283 .. 40200049
4767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029130.1

Sequence Viewer

Length: 837 bp
ATGGCAATGGCAATGGCTTGCCTTCAACCTTCTTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCAAAGCCCCACCCTTCAAAGCTCTTCTTTTCTCTCAACCCACCCAATCCCAATCCCAATCCCAATTCCAATGCCGAATCCGAAACCACGACGTCCCCAGTCGACCCGCCAAGTCCTGGGAATGCCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAATCTTCAGGTGTTGAAGCAAATGAGAAAAGCAAGGAAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGCAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGATCCCCCGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACGCCCTGGGGAAGTGCTTGAAACACAGGAAGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCGAAGCTCAGATTGGACTGCGAGAAGATTTTAAAGGATGGTGACTCATTGATGAATGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGGTAAAGAATATGACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.22

Weight (kDa)

8.64

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 188
AccI GTMKAC 1 cut(s) 174
AciI CCGC 1 cut(s) 179
AclI AACGTT 1 cut(s) 569
AclWI GGATC 3 cut(s) 491, 513, 689
AcuI CTGAAG 2 cut(s) 261, 785
AcyI GRCGYC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 7 cut(s) 26, 90, 287, 564, 611, 688, 814
AjnI CCWGG 2 cut(s) 187, 595
AjuI GAANNNNNNNTTGG 4 cut(s) 511, 543, 692, 724
AluBI AGCT 6 cut(s) 94, 236, 383, 629, 703, 763
AluI AGCT 6 cut(s) 94, 236, 383, 629, 703, 763
Alw21I GWGCWC 1 cut(s) 376
AlwI GGATC 3 cut(s) 491, 513, 689
ApeKI GCWGC 4 cut(s) 209, 470, 629, 662
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 749
AxyI CCTNAGG 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 4 cut(s) 196, 482, 616, 649
BccI CCATC 1 cut(s) 728
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 2 cut(s) 189, 597
BcnI CCSGG 1 cut(s) 503
BfaI CTAG 1 cut(s) 237
BisI GCNGC 4 cut(s) 210, 471, 630, 663
BlsI GCNGC 4 cut(s) 211, 472, 631, 664
Bme1390I CCNGG 3 cut(s) 189, 503, 597
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 3 cut(s) 189, 503, 597
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 439
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 188, 501, 595, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 170, 456
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 3 cut(s) 12, 18, 231
BseBI CCWGG 2 cut(s) 189, 597
BseDI CCNNGG 4 cut(s) 188, 501, 595, 596
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 3 cut(s) 12, 18, 231
BseMII CTCAG 3 cut(s) 420, 428, 718
BseNI ACTGG 2 cut(s) 170, 456
BseRI GAGGAG 2 cut(s) 58, 61
BseXI GCAGC 4 cut(s) 196, 482, 616, 649
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 4 cut(s) 151, 277, 354, 464
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 4 cut(s) 151, 277, 354, 464
BsmI GAATGC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 496, 505, 694
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 3 cut(s) 421, 427, 717
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 3 cut(s) 491, 513, 689
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 3 cut(s) 12, 18, 231
BsrI ACTGG 2 cut(s) 170, 456
BssECI CCNNGG 4 cut(s) 188, 501, 595, 596
BssMI GATC 3 cut(s) 496, 505, 694
BssNI GRCGYC 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 189, 597
Bst6I CTCTTC 2 cut(s) 49, 101
BstACI GRCGYC 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 19, 207, 381
BstDEI CTNAG 3 cut(s) 414, 429, 704
BstF5I GGATG 1 cut(s) 739
BstKTI GATC 3 cut(s) 499, 508, 697
BstMBI GATC 3 cut(s) 496, 505, 694
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 2 cut(s) 189, 597
BstSCI CCNGG 3 cut(s) 187, 501, 595
BstV1I GCAGC 4 cut(s) 196, 482, 616, 649
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
Bsu36I CCTNAGG 1 cut(s) 429
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 2 cut(s) 324, 374
Cac8I GCNNGC 3 cut(s) 19, 207, 381
CviAII CATG 3 cut(s) 36, 328, 531
DdeI CTNAG 3 cut(s) 414, 429, 704
DpnI GATC 3 cut(s) 498, 507, 696
DpnII GATC 3 cut(s) 496, 505, 694
DraI TTTAAA 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 49, 101
EarI CTCTTC 2 cut(s) 49, 101
Eco57I CTGAAG 2 cut(s) 261, 785
Eco81I CCTNAGG 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 187, 595
FaeI CATG 3 cut(s) 39, 331, 534
FaiI YATR 8 cut(s) 37, 246, 329, 532, 590, 786, 797, 827
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 4 cut(s) 151, 277, 354, 464
FatI CATG 3 cut(s) 35, 327, 530
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 210, 471, 630, 663
FokI GGATG 1 cut(s) 746
Fsp4HI GCNGC 4 cut(s) 210, 471, 630, 663
FspBI CTAG 1 cut(s) 237
GluI GCNGC 4 cut(s) 210, 471, 630, 663
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 439
HapII CCGG 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 3 cut(s) 39, 331, 534
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 4 cut(s) 149, 452, 537, 740
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 4 cut(s) 154, 699, 707, 758
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 5 cut(s) 32, 39, 96, 355, 760
HpyCH4IV ACGT 2 cut(s) 164, 569
HpyCH4V TGCA 2 cut(s) 224, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 3 cut(s) 414, 429, 704
HpySE526I ACGT 2 cut(s) 164, 569
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 3 cut(s) 39, 331, 534
Kzo9I GATC 3 cut(s) 496, 505, 694
LguI GCTCTTC 1 cut(s) 101
Lsp1109I GCAGC 4 cut(s) 196, 482, 616, 649
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 164, 569
MaeIII GTNAC 2 cut(s) 737, 804
MalI GATC 3 cut(s) 498, 507, 696
MboI GATC 3 cut(s) 496, 505, 694
MboII GAAGA 9 cut(s) 24, 36, 88, 265, 267, 268, 519, 632, 733
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 5 cut(s) 136, 200, 311, 460, 653
MlyI GAGTC 3 cut(s) 446, 546, 734
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 7 cut(s) 76, 79, 82, 358, 424, 495, 631
MseI TTAA 3 cut(s) 216, 728, 835
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 189, 503, 597
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 189, 597
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 503
NdeII GATC 3 cut(s) 496, 505, 694
NlaIII CATG 3 cut(s) 39, 331, 534
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 737
PasI CCCWGGG 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 101
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 4 cut(s) 211, 472, 631, 664
PleI GAGTC 3 cut(s) 446, 545, 734
PpsI GAGTC 3 cut(s) 446, 545, 734
Psp1406I AACGTT 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 187, 595
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 2 cut(s) 187, 595
PspN4I GGNNCC 1 cut(s) 393
PsuI RGATCY 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 677
SalI GTCGAC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 3 cut(s) 216, 728, 835
SatI GCNGC 4 cut(s) 210, 471, 630, 663
Sau3AI GATC 3 cut(s) 496, 505, 694
SchI GAGTC 3 cut(s) 446, 546, 734
ScrFI CCNGG 3 cut(s) 189, 503, 597
SduI GDGCHC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
Sse9I AATT 5 cut(s) 136, 200, 311, 460, 653
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 187, 501, 595
TaiI ACGT 2 cut(s) 167, 572
TaqI TCGA 2 cut(s) 174, 323
TasI AATT 5 cut(s) 136, 200, 311, 460, 653
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 216, 728, 835
Tru9I TTAA 3 cut(s) 216, 728, 835
TscAI CASTG 2 cut(s) 324, 381
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 4 cut(s) 209, 470, 629, 662
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 3 cut(s) 24, 519, 764
TspRI CASTG 2 cut(s) 324, 381
Van91I CCANNNNNTGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.