RchiOBHm_Chr1g0326961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000939
Physical Location & Seq
Forward (+)
15534763 .. 15534924
162 bp
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UTR
Exon/CDS
Intron
PRQ55653

Sequence Viewer

Length: 162 bp
ATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTATTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.46

Weight (kDa)

4.24

Isoelectric Point (pI)

21.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 93, 101
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 49
BslFI GGGAC 2 cut(s) 27, 137
BsmFI GGGAC 2 cut(s) 27, 137
Bsp1286I GDGCHC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 94, 100
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 87, 102
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 54
CviJI RGCY 3 cut(s) 56, 146, 157
CviKI_1 RGCY 3 cut(s) 56, 146, 157
DdeI CTNAG 2 cut(s) 87, 102
Eco81I CCTNAGG 1 cut(s) 102
FaqI GGGAC 2 cut(s) 27, 137
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 112
HinfI GANTC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 87, 102
LpnPI CCDG 5 cut(s) 42, 66, 74, 114, 142
Lsp1109I GCAGC 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 31, 97
MseI TTAA 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 160
SatI GCNGC 1 cut(s) 144
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 49
SetI ASST 2 cut(s) 58, 108
SgeI CNNG 7 cut(s) 29, 65, 69, 101, 109, 113, 141
Sse9I AATT 1 cut(s) 133
TasI AATT 1 cut(s) 133
Tru1I TTAA 1 cut(s) 160
Tru9I TTAA 1 cut(s) 160
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 143
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.