Rh7BG333700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000939
Physical Location & Seq
Forward (+)
34639566 .. 34644084
4519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG333700.1

Sequence Viewer

Length: 1179 bp
ATGGCAATGGCTTGCCTTCAACCTTCTTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCAAAGCCCCACCCTTCAAAGCTCTTCTTTTCTCTCAACCCACCCAATCCCAATCCCAATCCCAATCCCAATGCCGAATCCGAAACCACGACGTCCCCAGTCGACCCGCCAAGTCCTGGGAATGCCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAATCTTCAGGTGTTGAAGCAAATGAGAAAAGCAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCACCCACACCCAACCCTCAAGGACATGACCCCCCGGATGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACGCCCCGGGGAAGTGCTTGAAACACAGGAAGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAAGAGTAAAATGGGCTTGAACATTGATCCGAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAATGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGAGTGAGCTTCATGGGGTGGCTGCTTTACAGTGGTCTATTTGTCAAGATTCCCTGAGTAGGACAAAAGAAGCTCGAAATATGTATGAGAGGCTTCAATCCCACCCAACTGCTAGAGTAAGCAAGAAAGCGAGGCAATTTATGTTCAGCTTTCAGGCCATGGAAATGATGAAGTTTACAAGGAGCTCACCTTGGAGGAACACTGACTACCAGAATTTTTTTGAAGCTTTCATTGACAACAAATCTGACTACGTGCTGGAAGATGGTGAAGTCGAAGTAGGTACACTGAGTCAGATTCTCCCTTATATTTTTTTCCTTGTTTCTCCGATTTTTATAGTGTTACTCATTGCCATACAAAAGAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

43.57

Weight (kDa)

8.84

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 168
AciI CCGC 1 cut(s) 173
AclI AACGTT 1 cut(s) 566
AclWI GGATC 1 cut(s) 686
AcsI RAATTY 1 cut(s) 1024
AcuI CTGAAG 2 cut(s) 255, 782
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 1 cut(s) 1093
AfiI CCNNNNNNNGG 2 cut(s) 182, 870
AgsI TTSAA 9 cut(s) 20, 84, 281, 561, 608, 685, 811, 908, 1034
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 4 cut(s) 508, 540, 689, 721
Alw21I GWGCWC 3 cut(s) 370, 466, 998
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 1 cut(s) 966
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 4 cut(s) 203, 626, 659, 833
ApoI RAATTY 1 cut(s) 1024
AsuC2I CCSGG 3 cut(s) 497, 594, 595
AsuHPI GGTGA 3 cut(s) 746, 990, 1088
AvaI CYCGRG 1 cut(s) 593
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 725
Bbv12I GWGCWC 3 cut(s) 370, 466, 998
BbvI GCAGC 4 cut(s) 190, 613, 646, 820
BccI CCATC 2 cut(s) 725, 1067
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 3 cut(s) 497, 594, 595
BfaI CTAG 2 cut(s) 231, 924
BisI GCNGC 4 cut(s) 204, 627, 660, 834
BlsI GCNGC 4 cut(s) 205, 628, 661, 835
Bme1390I CCNGG 4 cut(s) 183, 497, 594, 595
BmeT110I CYCGRG 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 4 cut(s) 183, 497, 594, 595
BmrI ACTGGG 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 725
BpmI CTGGAG 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 3 cut(s) 497, 594, 595
BsaAI YACGTR 1 cut(s) 1063
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 7 cut(s) 182, 495, 592, 593, 594, 969, 1001
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 870
Bse1I ACTGG 2 cut(s) 164, 450
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 3 cut(s) 12, 225, 1155
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 7 cut(s) 182, 495, 592, 593, 594, 969, 1001
BseGI GGATG 2 cut(s) 505, 736
BseLI CCNNNNNNNGG 2 cut(s) 182, 870
BseMI GCAATG 3 cut(s) 12, 225, 1155
BseMII CTCAG 5 cut(s) 414, 422, 715, 857, 1088
BseNI ACTGG 2 cut(s) 164, 450
BseRI GAGGAG 2 cut(s) 52, 55
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 4 cut(s) 190, 613, 646, 820
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 968
BsiHKAI GWGCWC 3 cut(s) 370, 466, 998
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 2 cut(s) 497, 594
BslFI GGGAC 4 cut(s) 145, 271, 348, 458
BslI CCNNNNNNNGG 2 cut(s) 182, 870
BsmFI GGGAC 4 cut(s) 145, 271, 348, 458
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 370, 466, 998
Bsp143I GATC 2 cut(s) 502, 691
Bsp19I CCATGG 1 cut(s) 969
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 968
BspCNI CTCAG 5 cut(s) 415, 421, 714, 858, 1089
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 1 cut(s) 686
BspQI GCTCTTC 1 cut(s) 95
BsrDI GCAATG 3 cut(s) 12, 225, 1155
BsrI ACTGG 2 cut(s) 164, 450
BssECI CCNNGG 7 cut(s) 182, 495, 592, 593, 594, 969, 1001
BssMI GATC 2 cut(s) 502, 691
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 2 cut(s) 969, 1001
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 713, 843
Bst6I CTCTTC 2 cut(s) 43, 95
BstACI GRCGYC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 1063
BstC8I GCNNGC 3 cut(s) 13, 201, 375
BstDEI CTNAG 5 cut(s) 408, 423, 701, 866, 1097
BstDSI CCRYGG 1 cut(s) 969
BstF5I GGATG 2 cut(s) 505, 736
BstKTI GATC 2 cut(s) 505, 694
BstMBI GATC 2 cut(s) 502, 691
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 4 cut(s) 181, 495, 592, 593
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 4 cut(s) 190, 613, 646, 820
BstV2I GAAGAC 1 cut(s) 725
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 1 cut(s) 968
BtgI CCRYGG 1 cut(s) 969
BtsCI GGATG 2 cut(s) 505, 736
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 5 cut(s) 318, 368, 848, 1011, 1094
Cac8I GCNNGC 3 cut(s) 13, 201, 375
Cfr9I CCCGGG 1 cut(s) 593
Csp6I GTAC 1 cut(s) 1092
CviAII CATG 6 cut(s) 30, 322, 488, 528, 824, 970
CviQI GTAC 1 cut(s) 1092
DdeI CTNAG 5 cut(s) 408, 423, 701, 866, 1097
DpnI GATC 2 cut(s) 504, 693
DpnII GATC 2 cut(s) 502, 691
Eam1104I CTCTTC 2 cut(s) 43, 95
EarI CTCTTC 2 cut(s) 43, 95
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 2 cut(s) 969, 1001
Eco24I GRGCYC 1 cut(s) 998
Eco53kI GAGCTC 1 cut(s) 996
Eco57I CTGAAG 2 cut(s) 255, 782
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 593
EcoICRI GAGCTC 1 cut(s) 996
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 969, 1001
EcoT38I GRGCYC 1 cut(s) 998
ErhI CCWWGG 2 cut(s) 969, 1001
FaeI CATG 6 cut(s) 33, 325, 491, 531, 827, 973
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 4 cut(s) 145, 271, 348, 458
FatI CATG 6 cut(s) 29, 321, 487, 527, 823, 969
FauI CCCGC 1 cut(s) 180
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 204, 627, 660, 834
FokI GGATG 2 cut(s) 512, 743
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 4 cut(s) 204, 627, 660, 834
FspBI CTAG 2 cut(s) 231, 924
GluI GCNGC 4 cut(s) 204, 627, 660, 834
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 968
HapII CCGG 2 cut(s) 497, 594
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 6 cut(s) 33, 325, 491, 531, 827, 973
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 1035
HinfI GANTC 7 cut(s) 143, 446, 534, 737, 860, 1099, 1105
HpaII CCGG 2 cut(s) 497, 594
HphI GGTGA 3 cut(s) 746, 990, 1088
Hpy166II GTNNAC 4 cut(s) 169, 464, 987, 1094
Hpy188I TCNGA 7 cut(s) 148, 696, 704, 755, 1057, 1104, 1137
Hpy188III TCNNGA 3 cut(s) 42, 811, 857
Hpy8I GTNNAC 4 cut(s) 169, 464, 987, 1094
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 5 cut(s) 26, 33, 90, 349, 757
HpyCH4III ACNGT 2 cut(s) 713, 843
HpyCH4IV ACGT 3 cut(s) 158, 566, 1062
HpyCH4V TGCA 2 cut(s) 218, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 5 cut(s) 408, 423, 701, 866, 1097
HpySE526I ACGT 3 cut(s) 158, 566, 1062
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 6 cut(s) 33, 325, 491, 531, 827, 973
Kzo9I GATC 2 cut(s) 502, 691
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 993
Lsp1109I GCAGC 4 cut(s) 190, 613, 646, 820
MaeI CTAG 2 cut(s) 231, 924
MaeII ACGT 3 cut(s) 158, 566, 1062
MaeIII GTNAC 3 cut(s) 734, 801, 1149
MalI GATC 2 cut(s) 504, 693
MboI GATC 2 cut(s) 502, 691
MhlI GDGCHC 3 cut(s) 370, 466, 998
MluCI AATT 6 cut(s) 194, 305, 454, 650, 947, 1024
MlyI GAGTC 4 cut(s) 440, 543, 731, 1108
MmeI TCCRAC 1 cut(s) 733
MseI TTAA 2 cut(s) 210, 725
MslI CAYNNNNRTG 1 cut(s) 974
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 497, 594
MspR9I CCNGG 4 cut(s) 183, 497, 594, 595
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 3 cut(s) 497, 594, 595
NcoI CCATGG 1 cut(s) 969
NdeII GATC 2 cut(s) 502, 691
NlaIII CATG 6 cut(s) 33, 325, 491, 531, 827, 973
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 734
PciSI GCTCTTC 1 cut(s) 95
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 3 cut(s) 143, 860, 1105
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 4 cut(s) 205, 628, 661, 835
PleI GAGTC 4 cut(s) 440, 542, 731, 1107
PpsI GAGTC 4 cut(s) 440, 542, 731, 1107
Ppu21I YACGTR 1 cut(s) 1063
Psp124BI GAGCTC 1 cut(s) 998
Psp1406I AACGTT 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 387
PsrI GAACNNNNNNTAC 2 cut(s) 1001, 1033
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 1093
RsaNI GTAC 1 cut(s) 1092
RseI CAYNNNNRTG 1 cut(s) 974
SacI GAGCTC 1 cut(s) 998
SalI GTCGAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 210, 725
SatI GCNGC 4 cut(s) 204, 627, 660, 834
Sau3AI GATC 2 cut(s) 502, 691
SchI GAGTC 4 cut(s) 440, 543, 731, 1108
ScrFI CCNGG 4 cut(s) 183, 497, 594, 595
SduI GDGCHC 3 cut(s) 370, 466, 998
SmaI CCCGGG 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
Sse9I AATT 6 cut(s) 194, 305, 454, 650, 947, 1024
SsiI CCGC 1 cut(s) 173
SspMI CTAG 2 cut(s) 231, 924
SstI GAGCTC 1 cut(s) 998
StyD4I CCNGG 4 cut(s) 181, 495, 592, 593
StyI CCWWGG 2 cut(s) 969, 1001
TaaI ACNGT 2 cut(s) 713, 843
TaiI ACGT 3 cut(s) 161, 569, 1065
TaqI TCGA 4 cut(s) 168, 317, 886, 1083
TasI AATT 6 cut(s) 194, 305, 454, 650, 947, 1024
TfiI GAWTC 3 cut(s) 143, 860, 1105
Tru1I TTAA 2 cut(s) 210, 725
Tru9I TTAA 2 cut(s) 210, 725
TscAI CASTG 5 cut(s) 318, 375, 848, 1018, 1101
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 4 cut(s) 203, 626, 659, 833
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 6 cut(s) 18, 516, 761, 812, 995, 1030
TspMI CCCGGG 1 cut(s) 593
TspRI CASTG 5 cut(s) 318, 375, 848, 1018, 1101
Van91I CCANNNNNTGG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 462
XapI RAATTY 1 cut(s) 1024
XmaI CCCGGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 2 cut(s) 231, 924
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.