Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Reverse (-)

26133697 .. 26135089

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAATGGCTTGCCTTCAACCTTCTTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCCTCAAAGCCTCACCCTTCAAAGCTCTTCTTTTCTCTCAACTCACCCAATCCCAATCCCAATCCCAATCCCAATCCCAATGCCGAATCCGAAACCACGACGTCCCCAGTGGACCCGCCAAGTCCTGGGAATGCCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAAACTTCAGGTGTTGTAGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACGCCCAAGCCTCAAGGAGATGACCCCCCGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTGTTCCCTAGACCTAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACGCCCCGGGGAAGTGCTTGAAACACAGGAGGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAAGAGTAAAATAGGCTTGAACATTGATCCGAAGCTCAGATTGGATTGTGAGAAGGTTTGCTTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.53

Weight (kDa)

8.86

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	2 cut(s)	519, 695
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	20, 87, 570, 617, 694
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	4 cut(s)	517, 549, 698, 730
AluBI	AGCT	5 cut(s)	91, 239, 389, 635, 709
AluI	AGCT	5 cut(s)	91, 239, 389, 635, 709
Alw21I	GWGCWC	1 cut(s)	382
AlwI	GGATC	2 cut(s)	519, 695
Ama87I	CYCGRG	1 cut(s)	602
ApeKI	GCWGC	4 cut(s)	212, 476, 635, 668
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	3 cut(s)	509, 603, 604
AsuHPI	GGTGA	2 cut(s)	71, 102
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	199, 488, 622, 655
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	3 cut(s)	509, 603, 604
BfaI	CTAG	2 cut(s)	240, 552
BisI	GCNGC	4 cut(s)	213, 477, 636, 669
BlsI	GCNGC	4 cut(s)	214, 478, 637, 670
Bme1390I	CCNGG	4 cut(s)	192, 509, 603, 604
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	180, 399
BmrFI	CCNGG	4 cut(s)	192, 509, 603, 604
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	3 cut(s)	509, 603, 604
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	5 cut(s)	191, 507, 601, 602, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	173, 462
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	12, 234
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	5 cut(s)	191, 507, 601, 602, 603
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	2 cut(s)	12, 234
BseMII	CTCAG	3 cut(s)	426, 434, 724
BseNI	ACTGG	2 cut(s)	173, 462
BseRI	GAGGAG	3 cut(s)	52, 55, 58
BseXI	GCAGC	4 cut(s)	199, 488, 622, 655
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	509, 603
BslFI	GGGAC	4 cut(s)	154, 280, 360, 470
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmFI	GGGAC	4 cut(s)	154, 280, 360, 470
BsmI	GAATGC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	511, 700
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	427, 433, 723
BspLI	GGNNCC	2 cut(s)	180, 399
BspPI	GGATC	2 cut(s)	519, 695
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	12, 234
BsrI	ACTGG	2 cut(s)	173, 462
BssECI	CCNNGG	5 cut(s)	191, 507, 601, 602, 603
BssMI	GATC	2 cut(s)	511, 700
BssNI	GRCGYC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	43, 98
BstACI	GRCGYC	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	13, 210, 387
BstDEI	CTNAG	3 cut(s)	420, 435, 710
BstKTI	GATC	2 cut(s)	514, 703
BstMBI	GATC	2 cut(s)	511, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	4 cut(s)	190, 507, 601, 602
BstV1I	GCAGC	4 cut(s)	199, 488, 622, 655
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	180, 330, 380
Cac8I	GCNNGC	3 cut(s)	13, 210, 387
Cfr13I	GGNCC	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	602
CviAII	CATG	3 cut(s)	30, 334, 537
DdeI	CTNAG	3 cut(s)	420, 435, 710
DpnI	GATC	2 cut(s)	513, 702
DpnII	GATC	2 cut(s)	511, 700
Eam1104I	CTCTTC	2 cut(s)	43, 98
EarI	CTCTTC	2 cut(s)	43, 98
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	33, 337, 540
FaiI	YATR	5 cut(s)	31, 249, 335, 538, 596
FalI	AAGNNNNNCTT	3 cut(s)	80, 112, 719
FaqI	GGGAC	4 cut(s)	154, 280, 360, 470
FatI	CATG	3 cut(s)	29, 333, 536
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	213, 477, 636, 669
Fsp4HI	GCNGC	4 cut(s)	213, 477, 636, 669
FspBI	CTAG	2 cut(s)	240, 552
GluI	GCNGC	4 cut(s)	213, 477, 636, 669
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	445
HapII	CCGG	2 cut(s)	509, 603
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	33, 337, 540
HinfI	GANTC	2 cut(s)	152, 458
HpaII	CCGG	2 cut(s)	509, 603
HphI	GGTGA	2 cut(s)	71, 102
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	157, 705, 713
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	5 cut(s)	26, 33, 93, 361, 721
HpyCH4IV	ACGT	2 cut(s)	167, 575
HpyCH4V	TGCA	2 cut(s)	227, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	420, 435, 710
HpySE526I	ACGT	2 cut(s)	167, 575
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	33, 337, 540
Kzo9I	GATC	2 cut(s)	511, 700
LguI	GCTCTTC	1 cut(s)	98
Lsp1109I	GCAGC	4 cut(s)	199, 488, 622, 655
MaeI	CTAG	2 cut(s)	240, 552
MaeII	ACGT	2 cut(s)	167, 575
MalI	GATC	2 cut(s)	513, 702
MboI	GATC	2 cut(s)	511, 700
MboII	GAAGA	6 cut(s)	18, 30, 85, 268, 271, 525
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	4 cut(s)	203, 317, 466, 659
MlyI	GAGTC	1 cut(s)	452
MseI	TTAA	2 cut(s)	219, 742
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	509, 603
MspR9I	CCNGG	4 cut(s)	192, 509, 603, 604
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	3 cut(s)	509, 603, 604
NdeII	GATC	2 cut(s)	511, 700
NlaIII	CATG	3 cut(s)	33, 337, 540
NlaIV	GGNNCC	2 cut(s)	180, 399
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	214, 478, 637, 670
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	180, 399
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	219, 742
SatI	GCNGC	4 cut(s)	213, 477, 636, 669
Sau3AI	GATC	2 cut(s)	511, 700
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	4 cut(s)	192, 509, 603, 604
SduI	GDGCHC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	178
SmaI	CCCGGG	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	4 cut(s)	203, 317, 466, 659
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	240, 552
StyD4I	CCNGG	4 cut(s)	190, 507, 601, 602
TaiI	ACGT	2 cut(s)	170, 578
TaqI	TCGA	1 cut(s)	329
TasI	AATT	4 cut(s)	203, 317, 466, 659
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	219, 742
Tru9I	TTAA	2 cut(s)	219, 742
TscAI	CASTG	3 cut(s)	180, 330, 387
TseI	GCWGC	4 cut(s)	212, 476, 635, 668
TspDTI	ATGAA	2 cut(s)	18, 525
TspMI	CCCGGG	1 cut(s)	602
TspRI	CASTG	3 cut(s)	180, 330, 387
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	178
XmaI	CCCGGG	1 cut(s)	602
XspI	CTAG	2 cut(s)	240, 552
ZraI	GACGTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.